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ATCC64974_20210-T1, ATCC64974_20210-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_20210-T1
Unique NameATCC64974_20210-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000003.1:2770345..2771373+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_20210-T1 ID=ATCC64974_20210-T1|Name=ATCC64974_20210-T1|organism=Aspergillus niger N402|type=mRNA|length=1029bp|location=Sequence derived from alignment at OGUI01000003.1:2770345..2771373+ (Aspergillus niger N402)
ATGGGTGAGTGAATTTTTCCAAAATACCTTTATTGTCTCTCAATGGTGGA
TCGGCTATTGCGATATTCCCCCTGCGATCGTTGAACGACTTTTTACGGCA
TCATTTTATCTCAGCGACATCGGATAATATAAGACTCGATTGAAATTGGA
CTGGAATCGGTTGGGAACAAGAATGGTGGAAGGATTTTTCAACTCTGGAC
GACTAATGGGGGAGGACGAAATTTTCGAAGATATCGTGGCGCAGAAATGA
AATCATCGCAAAGGACCGACGACTTGCACAACAGTCAACAACGTTTCGCA
CGGAATATACGCAACGACTGAAGCCATTGCACGAGGCAGTTCTCATCGGA
TGGGAGAACATGGCTGACTGGGATCCTTAGGGCGTCTCACCGAGTACCAG
GTCATTGGGCGTCACCTGCCCACCGAGGCTAACCCCACGCCCAAGCTGTA
CCGCATGCGCATCTTCGCGCCCAACACTGTTGTCGCTAAGTCCCGGTTCT
GGTACTTCCTGACCCAGCTCCGCAAGGTCAAGAAGGCCAACGGTGAGATC
GTCAGCATCAATGTGGTATGTGTGGCCGTTATCAAGCGACAACTCGGCAG
TGTTGGCTGACGCCTGTCTTTTTTCCCCATCCAATAGATCAGCGAGAAGC
GCCCTACCAAGGTCAAGAACTTCGGTATCTGGCTCCGCTACGACTCCCGC
TCCGGCACCCACAACATGTACAAGGAGTTCCGTGAGATGAGCCGCACCGA
GGCTGTTGAGGCTCTCTACCAGGACATGGCTGCCCGCCACCGTGCCCGCT
TCGGCTCCATCCACGTATGTTGAGATTCCTATCCTCTTTTGCTGAGGAAT
ATTGCGATCTAACTACGTTCCTACAGATCCTTAAGGTTGTTGAGATCGAG
AACGCCGACAGCATCCGCCGCCCCTACATCAAGCAGCTCCTCTCCAAGAA
CCTCAAGTTCCCCCTGCCCCACCGTGCTGCCCACGGCAAGAAGCTGTTCG
CTTACTCTCGTCCCACTACTTTCGCGTAA
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Coding sequence (CDS) from alignment at OGUI01000003.1:2770345..2771373+

>ATCC64974_20210-T1 ID=ATCC64974_20210-T1|Name=ATCC64974_20210-T1|organism=Aspergillus niger N402|type=CDS|length=2076bp|location=Sequence derived from alignment at OGUI01000003.1:2770345..2771373+ (Aspergillus niger N402)
ATGGGGCGTCTCACCGAGTACCAGGTCATTGGGCGTCACCTGCCCACCGA
GGCTAACCCCACGCCCAAGCTGTACCGCATGCGCATCTTCGCGCCCAACA
CTGTTGTCGCTAAGTCCCGGTTCTGGTACTTCCTGACCCAGCTCCGCAAG
GTCAAGAAGGCCAACGGTGAGATCGTCAGCATCAATGTGATCAGCGAGAA
GCGCCCTACCAAGGTCAAGAACTTCGGTATCTGGCTCCGCTACGACTCCC
GCTCCGGCACCCACAACATGTACAAGGAGTTCCGTGAGATGAGCCGCACC
GAGGCTGTTGAGGCTCTCTACCAGGACATGGCTGCCCGCCACCGTGCCCG
CTTCGGCTCCATCCACATCCTTAAGGTTGTTGAGATCGAGAACGCCGACA
GCATCCGCCGCCCCTACATCAAGCAGCTCCTCTCCAAGAACCTCAAGTTC
CCCCTGCCCCACCGTGCTGCCCACGGCAAGAAGCTGTTCGCTTACTCTCG
TCCCACTACTTTCGCGTAAATGGGGCGTCTCACCGAGTACCAGGTCATTG
GGCGTCACCTGCCCACCGAGGCTAACCCCACGCCCAAGCTGTACCGCATG
CGCATCTTCGCGCCCAACACTGTTGTCGCTAAGTCCCGGTTCTGGTACTT
CCTGACCCAGCTCCGCAAGGTCAAGAAGGCCAACGGTGAGATCGTCAGCA
TCAATGTGATCAGCGAGAAGCGCCCTACCAAGGTCAAGAACTTCGGTATC
TGGCTCCGCTACGACTCCCGCTCCGGCACCCACAACATGTACAAGGAGTT
CCGTGAGATGAGCCGCACCGAGGCTGTTGAGGCTCTCTACCAGGACATGG
CTGCCCGCCACCGTGCCCGCTTCGGCTCCATCCACATCCTTAAGGTTGTT
GAGATCGAGAACGCCGACAGCATCCGCCGCCCCTACATCAAGCAGCTCCT
CTCCAAGAACCTCAAGTTCCCCCTGCCCCACCGTGCTGCCCACGGCAAGA
AGCTGTTCGCTTACTCTCGTCCCACTACTTTCGCGTAAATGGGGCGTCTC
ACCGAGTACCAGGTCATTGGGCGTCACCTGCCCACCGAGGCTAACCCCAC
GCCCAAGCTGTACCGCATGCGCATCTTCGCGCCCAACACTGTTGTCGCTA
AGTCCCGGTTCTGGTACTTCCTGACCCAGCTCCGCAAGGTCAAGAAGGCC
AACGGTGAGATCGTCAGCATCAATGTGATCAGCGAGAAGCGCCCTACCAA
GGTCAAGAACTTCGGTATCTGGCTCCGCTACGACTCCCGCTCCGGCACCC
ACAACATGTACAAGGAGTTCCGTGAGATGAGCCGCACCGAGGCTGTTGAG
GCTCTCTACCAGGACATGGCTGCCCGCCACCGTGCCCGCTTCGGCTCCAT
CCACATCCTTAAGGTTGTTGAGATCGAGAACGCCGACAGCATCCGCCGCC
CCTACATCAAGCAGCTCCTCTCCAAGAACCTCAAGTTCCCCCTGCCCCAC
CGTGCTGCCCACGGCAAGAAGCTGTTCGCTTACTCTCGTCCCACTACTTT
CGCGTAAATGGGGCGTCTCACCGAGTACCAGGTCATTGGGCGTCACCTGC
CCACCGAGGCTAACCCCACGCCCAAGCTGTACCGCATGCGCATCTTCGCG
CCCAACACTGTTGTCGCTAAGTCCCGGTTCTGGTACTTCCTGACCCAGCT
CCGCAAGGTCAAGAAGGCCAACGGTGAGATCGTCAGCATCAATGTGATCA
GCGAGAAGCGCCCTACCAAGGTCAAGAACTTCGGTATCTGGCTCCGCTAC
GACTCCCGCTCCGGCACCCACAACATGTACAAGGAGTTCCGTGAGATGAG
CCGCACCGAGGCTGTTGAGGCTCTCTACCAGGACATGGCTGCCCGCCACC
GTGCCCGCTTCGGCTCCATCCACATCCTTAAGGTTGTTGAGATCGAGAAC
GCCGACAGCATCCGCCGCCCCTACATCAAGCAGCTCCTCTCCAAGAACCT
CAAGTTCCCCCTGCCCCACCGTGCTGCCCACGGCAAGAAGCTGTTCGCTT
ACTCTCGTCCCACTACTTTCGCGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL20AATCC64974_20210Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_20210-T1.exon1ATCC64974_20210-T1.exon1Aspergillus niger N402exon
ATCC64974_20210-T1.exon2ATCC64974_20210-T1.exon2Aspergillus niger N402exon
ATCC64974_20210-T1.exon3ATCC64974_20210-T1.exon3Aspergillus niger N402exon
ATCC64974_20210-T1.exon4ATCC64974_20210-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_20210-T1.cdsATCC64974_20210-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_20210-T1ATCC64974_20210-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR028877
DBxrefInterPro:IPR023573
DBxrefInterPro:IPR021138
DBxrefPFAM:PF01775
Product60S ribosomal protein L20A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000003.1supercontigOGUI01000003.1:2770345..2771373 +
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