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ATCC64974_20800-T1, ATCC64974_20800-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_20800-T1
Unique NameATCC64974_20800-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000003.1:2951377..2952210+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_20800-T1 ID=ATCC64974_20800-T1|Name=ATCC64974_20800-T1|organism=Aspergillus niger N402|type=mRNA|length=834bp|location=Sequence derived from alignment at OGUI01000003.1:2951377..2952210+ (Aspergillus niger N402)
ATGGCTGACGAGGTAGGTGTTAACTCTCCTTCTGCGAACTTCCCGGTCTA
CTCAGTTGCGGCCTATCTTTGTCCTGCTTGCTCGGTTGGGTTGGGTGTCT
TCGGGGCCTCGCATCTCGATCGCTGCCCCCCACCCAACCCCCCTCGTTCC
TGCAGACATTGCATATTTTGCTACACTCGCCGACCATCTGCTATAATTTC
AATCATGGGCTAGTTCGCTAATGTTCACCTTTAACAGCACCACGAGACCT
TCGAGTCCGCCGACGCCGGCGCCTCGGCCACCTTCCCCATGCAGTGCTCT
GCCCTGCGCAAGAACGGTCACGTTGTTATCAAGGGCCGCCCCTGCAAGAT
CGTTGAGATGTCCACCTCCAAGACTGGCAAGCACGGTCACGCCAAGGTCC
ACATCGTTGCCATCGATATCTTCACTGGCAAGAAGCTTGAGGATCTGTCC
CCCTCCACCCACAACATGGACGTCCCCAACGTCTACCGCAAGGAATACCA
GCTCGTGAGTAGTTTGGAACATGAACGGTCTTGGTGATCTTGACTCGCTA
ACACAGCTATAGCTTGACGTTACTGACGACGACTTCCTTTCCCTGATGGA
CGAGAACGGTAACACCAAGGACGACGTCAAGGTCCCCGAAGGTGAGGTGG
GCGACCGTATCCGCCGCATGTTCCACGATGAGGAGAAGGACTGCAGTGAG
TAACACCCGTCCGTTTTGGCTAGGTGGCTGTTGGCAAGATTACTGACGAA
TTTTCCTTTTCAGACGTCACCATCCTGTCCTCCATGGGCGAGCAGGTCTG
CATGGATGTCAAGGAGGCTCCCAAGGGCAACTAA
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Coding sequence (CDS) from alignment at OGUI01000003.1:2951377..2952210+

>ATCC64974_20800-T1 ID=ATCC64974_20800-T1|Name=ATCC64974_20800-T1|organism=Aspergillus niger N402|type=CDS|length=1932bp|location=Sequence derived from alignment at OGUI01000003.1:2951377..2952210+ (Aspergillus niger N402)
ATGGCTGACGAGCACCACGAGACCTTCGAGTCCGCCGACGCCGGCGCCTC
GGCCACCTTCCCCATGCAGTGCTCTGCCCTGCGCAAGAACGGTCACGTTG
TTATCAAGGGCCGCCCCTGCAAGATCGTTGAGATGTCCACCTCCAAGACT
GGCAAGCACGGTCACGCCAAGGTCCACATCGTTGCCATCGATATCTTCAC
TGGCAAGAAGCTTGAGGATCTGTCCCCCTCCACCCACAACATGGACGTCC
CCAACGTCTACCGCAAGGAATACCAGCTCCTTGACGTTACTGACGACGAC
TTCCTTTCCCTGATGGACGAGAACGGTAACACCAAGGACGACGTCAAGGT
CCCCGAAGGTGAGGTGGGCGACCGTATCCGCCGCATGTTCCACGATGAGG
AGAAGGACTGCAACGTCACCATCCTGTCCTCCATGGGCGAGCAGGTCTGC
ATGGATGTCAAGGAGGCTCCCAAGGGCAACTAAATGGCTGACGAGCACCA
CGAGACCTTCGAGTCCGCCGACGCCGGCGCCTCGGCCACCTTCCCCATGC
AGTGCTCTGCCCTGCGCAAGAACGGTCACGTTGTTATCAAGGGCCGCCCC
TGCAAGATCGTTGAGATGTCCACCTCCAAGACTGGCAAGCACGGTCACGC
CAAGGTCCACATCGTTGCCATCGATATCTTCACTGGCAAGAAGCTTGAGG
ATCTGTCCCCCTCCACCCACAACATGGACGTCCCCAACGTCTACCGCAAG
GAATACCAGCTCCTTGACGTTACTGACGACGACTTCCTTTCCCTGATGGA
CGAGAACGGTAACACCAAGGACGACGTCAAGGTCCCCGAAGGTGAGGTGG
GCGACCGTATCCGCCGCATGTTCCACGATGAGGAGAAGGACTGCAACGTC
ACCATCCTGTCCTCCATGGGCGAGCAGGTCTGCATGGATGTCAAGGAGGC
TCCCAAGGGCAACTAAATGGCTGACGAGCACCACGAGACCTTCGAGTCCG
CCGACGCCGGCGCCTCGGCCACCTTCCCCATGCAGTGCTCTGCCCTGCGC
AAGAACGGTCACGTTGTTATCAAGGGCCGCCCCTGCAAGATCGTTGAGAT
GTCCACCTCCAAGACTGGCAAGCACGGTCACGCCAAGGTCCACATCGTTG
CCATCGATATCTTCACTGGCAAGAAGCTTGAGGATCTGTCCCCCTCCACC
CACAACATGGACGTCCCCAACGTCTACCGCAAGGAATACCAGCTCCTTGA
CGTTACTGACGACGACTTCCTTTCCCTGATGGACGAGAACGGTAACACCA
AGGACGACGTCAAGGTCCCCGAAGGTGAGGTGGGCGACCGTATCCGCCGC
ATGTTCCACGATGAGGAGAAGGACTGCAACGTCACCATCCTGTCCTCCAT
GGGCGAGCAGGTCTGCATGGATGTCAAGGAGGCTCCCAAGGGCAACTAAA
TGGCTGACGAGCACCACGAGACCTTCGAGTCCGCCGACGCCGGCGCCTCG
GCCACCTTCCCCATGCAGTGCTCTGCCCTGCGCAAGAACGGTCACGTTGT
TATCAAGGGCCGCCCCTGCAAGATCGTTGAGATGTCCACCTCCAAGACTG
GCAAGCACGGTCACGCCAAGGTCCACATCGTTGCCATCGATATCTTCACT
GGCAAGAAGCTTGAGGATCTGTCCCCCTCCACCCACAACATGGACGTCCC
CAACGTCTACCGCAAGGAATACCAGCTCCTTGACGTTACTGACGACGACT
TCCTTTCCCTGATGGACGAGAACGGTAACACCAAGGACGACGTCAAGGTC
CCCGAAGGTGAGGTGGGCGACCGTATCCGCCGCATGTTCCACGATGAGGA
GAAGGACTGCAACGTCACCATCCTGTCCTCCATGGGCGAGCAGGTCTGCA
TGGATGTCAAGGAGGCTCCCAAGGGCAACTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006452translational frameshifting
GO:0045905positive regulation of translational termination
GO:0045901positive regulation of translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0003746translation elongation factor activity
GO:0003723RNA binding
GO:0043022ribosome binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ANB1ATCC64974_20800Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_20800-T1.exon1ATCC64974_20800-T1.exon1Aspergillus niger N402exon
ATCC64974_20800-T1.exon2ATCC64974_20800-T1.exon2Aspergillus niger N402exon
ATCC64974_20800-T1.exon3ATCC64974_20800-T1.exon3Aspergillus niger N402exon
ATCC64974_20800-T1.exon4ATCC64974_20800-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_20800-T1.cdsATCC64974_20800-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_20800-T1ATCC64974_20800-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR008991
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR019769
DBxrefInterPro:IPR014722
DBxrefInterPro:IPR001884
DBxrefInterPro:IPR020189
DBxrefPFAM:PF01287
Producttranslation initiation factor eIF5A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000003.1supercontigOGUI01000003.1:2951377..2952210 +
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