You are here

Home

ATCC64974_20820-T1, ATCC64974_20820-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_20820-T1
Unique NameATCC64974_20820-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000003.1:2955416..2956294+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_20820-T1 ID=ATCC64974_20820-T1|Name=ATCC64974_20820-T1|organism=Aspergillus niger N402|type=mRNA|length=879bp|location=Sequence derived from alignment at OGUI01000003.1:2955416..2956294+ (Aspergillus niger N402)
ATGTCGTTTTTTCCGCGTCTCTGCAGTGCAGATGTAGGTCATTCCAAGTC
CCCTGGCAACCACCCGTCGAATTACGGTCGAATCCCGAAAGATGGCACGA
ATATATCATCGAAAATGAAATAAGGAAACTGACCCAGGCTCTTCTCCGAT
TAATAGTTTCGTCAAGACCCTCACGGGTAAGACCATTACCCTCGACGTCG
AGTCGAGCGACACCATCGACAACGTCAAGACCAAGATCCAGGACAAGGAG
GGTATCCCCCCGGATCAGCAGCGTCTTATCTTCGCTGGTAAGCAGCTTGA
GGATGGCCGCACCCTGAGCGACTACAACATCCAGAAGGTATGAGTGAAAC
GGTTCCGCGAATCATCTATACGTCGATTTCGTCTGCTCGGATAGTCGGTT
ACGAACATGATGCGATACGGGTCGGTTGGGGCGCCACAACATACTACTTG
GGTTTGAGGGGAGGATCAATCGGCACGGTCGCATTCATGAACGTTTCACG
ACTATCGACATTCGATGCGACTTGACTATTGGGGATATAGTTTGACTGAC
GGGTTCTTTTTCTCGACTATAGGAGTCCACCCTCCACCTGGTCCTCCGTC
TCCGTGGTGGTATCATCGAGCCCTCCCTTAAGGCTCTCGCCTCCAAGTAC
AACTGCGAGAAGTCCATCTGCCGCAAGTGCTACGTACGTCCATCCATCTA
TTCTACTTTTCTATTCTTCCGACTCGATCCCGCCCTCTTTTGAGTCCCGC
CTAGCGAACCATTTCCCCCACTAACATTGATCCTCCGATTAGGCCCGTCT
TCCCCCCCGTGCCACCAACTGCCGCAAGAAGAAGTGTGGTCACACCAACC
AGCTCCGCCCCAAGAAGAAGCTCAAATAG
back to top

Coding sequence (CDS) from alignment at OGUI01000003.1:2955416..2956294+

>ATCC64974_20820-T1 ID=ATCC64974_20820-T1|Name=ATCC64974_20820-T1|organism=Aspergillus niger N402|type=CDS|length=1608bp|location=Sequence derived from alignment at OGUI01000003.1:2955416..2956294+ (Aspergillus niger N402)
ATGTCGTTTTTTCCGCGTCTCTGCAGTGCAGATACCCTCACGGGTAAGAC
CATTACCCTCGACGTCGAGTCGAGCGACACCATCGACAACGTCAAGACCA
AGATCCAGGACAAGGAGGGTATCCCCCCGGATCAGCAGCGTCTTATCTTC
GCTGGTAAGCAGCTTGAGGATGGCCGCACCCTGAGCGACTACAACATCCA
GAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTCCGTGGTGGTATCATCG
AGCCCTCCCTTAAGGCTCTCGCCTCCAAGTACAACTGCGAGAAGTCCATC
TGCCGCAAGTGCTACGCCCGTCTTCCCCCCCGTGCCACCAACTGCCGCAA
GAAGAAGTGTGGTCACACCAACCAGCTCCGCCCCAAGAAGAAGCTCAAAT
AGATGTCGTTTTTTCCGCGTCTCTGCAGTGCAGATACCCTCACGGGTAAG
ACCATTACCCTCGACGTCGAGTCGAGCGACACCATCGACAACGTCAAGAC
CAAGATCCAGGACAAGGAGGGTATCCCCCCGGATCAGCAGCGTCTTATCT
TCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTGAGCGACTACAACATC
CAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTCCGTGGTGGTATCAT
CGAGCCCTCCCTTAAGGCTCTCGCCTCCAAGTACAACTGCGAGAAGTCCA
TCTGCCGCAAGTGCTACGCCCGTCTTCCCCCCCGTGCCACCAACTGCCGC
AAGAAGAAGTGTGGTCACACCAACCAGCTCCGCCCCAAGAAGAAGCTCAA
ATAGATGTCGTTTTTTCCGCGTCTCTGCAGTGCAGATACCCTCACGGGTA
AGACCATTACCCTCGACGTCGAGTCGAGCGACACCATCGACAACGTCAAG
ACCAAGATCCAGGACAAGGAGGGTATCCCCCCGGATCAGCAGCGTCTTAT
CTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTGAGCGACTACAACA
TCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTCCGTGGTGGTATC
ATCGAGCCCTCCCTTAAGGCTCTCGCCTCCAAGTACAACTGCGAGAAGTC
CATCTGCCGCAAGTGCTACGCCCGTCTTCCCCCCCGTGCCACCAACTGCC
GCAAGAAGAAGTGTGGTCACACCAACCAGCTCCGCCCCAAGAAGAAGCTC
AAATAGATGTCGTTTTTTCCGCGTCTCTGCAGTGCAGATACCCTCACGGG
TAAGACCATTACCCTCGACGTCGAGTCGAGCGACACCATCGACAACGTCA
AGACCAAGATCCAGGACAAGGAGGGTATCCCCCCGGATCAGCAGCGTCTT
ATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTGAGCGACTACAA
CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTCCGTGGTGGTA
TCATCGAGCCCTCCCTTAAGGCTCTCGCCTCCAAGTACAACTGCGAGAAG
TCCATCTGCCGCAAGTGCTACGCCCGTCTTCCCCCCCGTGCCACCAACTG
CCGCAAGAAGAAGTGTGGTCACACCAACCAGCTCCGCCCCAAGAAGAAGC
TCAAATAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
UBI1ATCC64974_20820Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_20820-T1.exon1ATCC64974_20820-T1.exon1Aspergillus niger N402exon
ATCC64974_20820-T1.exon2ATCC64974_20820-T1.exon2Aspergillus niger N402exon
ATCC64974_20820-T1.exon3ATCC64974_20820-T1.exon3Aspergillus niger N402exon
ATCC64974_20820-T1.exon4ATCC64974_20820-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_20820-T1.cdsATCC64974_20820-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_20820-T1ATCC64974_20820-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR029071
DBxrefInterPro:IPR019954
DBxrefInterPro:IPR038587
DBxrefInterPro:IPR001975
DBxrefInterPro:IPR000626
DBxrefInterPro:IPR019956
DBxrefPFAM:PF14560
DBxrefPFAM:PF00240
DBxrefPFAM:PF01020
DBxrefPFAM:PF11976
ProductPolyubiquitin
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000003.1supercontigOGUI01000003.1:2955416..2956294 +
Powered by Drupal