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ATCC64974_22560-T1, ATCC64974_22560-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_22560-T1
Unique NameATCC64974_22560-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000003.1:3498324..3499032+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_22560-T1 ID=ATCC64974_22560-T1|Name=ATCC64974_22560-T1|organism=Aspergillus niger N402|type=mRNA|length=709bp|location=Sequence derived from alignment at OGUI01000003.1:3498324..3499032+ (Aspergillus niger N402)
ATGGCCAACTATCTCGCCTCCATCTTCGGTACAGAGCAGGACAAGGTCAA
CTGCTCCTTCTACTACAAAATCGGAGCTTGCAGACATGGCGACCGCTGCT
CCCGAAAGCACGTTAAGCCGTCATACTCTCAGACGATCCTGATGCCGAAC
ATGTACCAGAATCCCGCGTACGACCCGAAGAGCAAGATGAACCCCAGTCA
GCTACAGAACCACTTTGATGCTTTCTACGAGGATGTGTGGTGCGAGATGT
GCAAGTACGGCGAGTTGGAGGAGTTGGTTGTCTGCGATAACAACAATGAC
CGTGAGTCGCATCCATTCATATCCCTTCCCCGGATAGTGGTAAGATATAG
GCTAACATAGAGTTTCTTCTTCTCTAATAGACCTCATCGGAAATGTCTAC
GCGCGCTTCAAATACGAAGAAGATGCCCAGGCCGCCTGCGACGCTTTGAA
TTCACGGTGGTACGCGGCACGACCTATATATTGCGAATTATCACCGGTTA
CAGATTTCCGAGAAGCTTGTTGTCGGTTAAATAGCGGCGAGGGGTGTGTA
CGTGGTGGATTCTGCAACTTCATTCATCGGAAGGACCCCAGCAATGAATT
GGATCGGGATCTTCGTCTCAGTACGAAGAAGTGGTTGAAGGAGCGTGGCA
GGGATGCGAGAAGTGTCAGCCGCAGTCCTAGTCCGGAGCCGACCCGGAGG
AGGTACTAG
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Coding sequence (CDS) from alignment at OGUI01000003.1:3498324..3499032+

>ATCC64974_22560-T1 ID=ATCC64974_22560-T1|Name=ATCC64974_22560-T1|organism=Aspergillus niger N402|type=CDS|length=1665bp|location=Sequence derived from alignment at OGUI01000003.1:3498324..3499032+ (Aspergillus niger N402)
ATGGCCAACTATCTCGCCTCCATCTTCGGTACAGAGCAGGACAAGGTCAA
CTGCTCCTTCTACTACAAAATCGGAGCTTGCAGACATGGCGACCGCTGCT
CCCGAAAGCACGTTAAGCCGTCATACTCTCAGACGATCCTGATGCCGAAC
ATGTACCAGAATCCCGCGTACGACCCGAAGAGCAAGATGAACCCCAGTCA
GCTACAGAACCACTTTGATGCTTTCTACGAGGATGTGTGGTGCGAGATGT
GCAAGTACGGCGAGTTGGAGGAGTTGGTTGTCTGCGATAACAACAATGAC
CACCTCATCGGAAATGTCTACGCGCGCTTCAAATACGAAGAAGATGCCCA
GGCCGCCTGCGACGCTTTGAATTCACGGTGCGGCGAGGGGTGTGTACGTG
GTGGATTCTGCAACTTCATTCATCGGAAGGACCCCAGCAATGAATTGGAT
CGGGATCTTCGTCTCAGTACGAAGAAGTGGTTGAAGGAGCGTGGCAGGGA
TGCGAGAAGTGTCAGCCGCAGTCCTAGTCCGGAGCCGACCCGGAGGAGGT
ACTAGATGGCCAACTATCTCGCCTCCATCTTCGGTACAGAGCAGGACAAG
GTCAACTGCTCCTTCTACTACAAAATCGGAGCTTGCAGACATGGCGACCG
CTGCTCCCGAAAGCACGTTAAGCCGTCATACTCTCAGACGATCCTGATGC
CGAACATGTACCAGAATCCCGCGTACGACCCGAAGAGCAAGATGAACCCC
AGTCAGCTACAGAACCACTTTGATGCTTTCTACGAGGATGTGTGGTGCGA
GATGTGCAAGTACGGCGAGTTGGAGGAGTTGGTTGTCTGCGATAACAACA
ATGACCACCTCATCGGAAATGTCTACGCGCGCTTCAAATACGAAGAAGAT
GCCCAGGCCGCCTGCGACGCTTTGAATTCACGGTGCGGCGAGGGGTGTGT
ACGTGGTGGATTCTGCAACTTCATTCATCGGAAGGACCCCAGCAATGAAT
TGGATCGGGATCTTCGTCTCAGTACGAAGAAGTGGTTGAAGGAGCGTGGC
AGGGATGCGAGAAGTGTCAGCCGCAGTCCTAGTCCGGAGCCGACCCGGAG
GAGGTACTAGATGGCCAACTATCTCGCCTCCATCTTCGGTACAGAGCAGG
ACAAGGTCAACTGCTCCTTCTACTACAAAATCGGAGCTTGCAGACATGGC
GACCGCTGCTCCCGAAAGCACGTTAAGCCGTCATACTCTCAGACGATCCT
GATGCCGAACATGTACCAGAATCCCGCGTACGACCCGAAGAGCAAGATGA
ACCCCAGTCAGCTACAGAACCACTTTGATGCTTTCTACGAGGATGTGTGG
TGCGAGATGTGCAAGTACGGCGAGTTGGAGGAGTTGGTTGTCTGCGATAA
CAACAATGACCACCTCATCGGAAATGTCTACGCGCGCTTCAAATACGAAG
AAGATGCCCAGGCCGCCTGCGACGCTTTGAATTCACGGTGCGGCGAGGGG
TGTGTACGTGGTGGATTCTGCAACTTCATTCATCGGAAGGACCCCAGCAA
TGAATTGGATCGGGATCTTCGTCTCAGTACGAAGAAGTGGTTGAAGGAGC
GTGGCAGGGATGCGAGAAGTGTCAGCCGCAGTCCTAGTCCGGAGCCGACC
CGGAGGAGGTACTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0089701U2AF complex
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC64974_22560ATCC64974_22560Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_22560-T1.exon1ATCC64974_22560-T1.exon1Aspergillus niger N402exon
ATCC64974_22560-T1.exon2ATCC64974_22560-T1.exon2Aspergillus niger N402exon
ATCC64974_22560-T1.exon3ATCC64974_22560-T1.exon3Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_22560-T1.cdsATCC64974_22560-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_22560-T1ATCC64974_22560-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR035979
DBxrefInterPro:IPR000571
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR009145
DBxrefPFAM:PF00642
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000003.1supercontigOGUI01000003.1:3498324..3499032 +
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