You are here

Home

ATCC64974_22790-T1, ATCC64974_22790-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_22790-T1
Unique NameATCC64974_22790-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000003.1:3557225..3557970+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_22790-T1 ID=ATCC64974_22790-T1|Name=ATCC64974_22790-T1|organism=Aspergillus niger N402|type=mRNA|length=746bp|location=Sequence derived from alignment at OGUI01000003.1:3557225..3557970+ (Aspergillus niger N402)
ATGCTCACCAAGAACCTTCTCCTCTGCTTTGCCGCGGCTAAGGCTGCTCT
GGCTGTTCCCCACGACTCTGTGGCCCAGCGTTCGGATGCCTTGCACATGC
TCTCTGAGCGCTCGACCCCGAGCTCGACCGGCGAGAACAACGGCTTCTAC
TACTCCTTCTGGACCGACGGCGGTGGAGACGTGACCTACACCAACGGAGA
TGCTGGTGCCTACACTGTTGAGTGGTCCAACGTGGGCAACTTTGTCGGTG
GAAAGGGCTGGAACCCCGGAAGTGCGCAGTAAGTTAATCCTCCTCACGCT
ATCTCTTTGCAGTAACCAATGAAACGATTACTCACAAAATAATCAGGGAC
ATCACCTACAGCGGCACCTTCACCCCTAGCGGCAACGGCTACCTCTCCGT
CTATGGCTGGACCACTGACCCTCTGATCGAGTACTACATCGTCGAGTCCT
ACGGCGACTACAACCCCGGCAGTGGAGGCACGTACAAGGGCACCGTCACC
TCGGACGGATCCGTTTACGATATCTACACGGCTACCCGTACCAATGCTGC
TTCCATTCAGGGAACCGCTACCTTCACTCAGTACTGGTCCGTTCGCCAGA
ACAAGAGAGTTGGCGGAACCGTTACCACCTCCAACCACTTCAATGCTTGG
GCTAAGCTGGGAATGAACCTGGGTACTCACAACTACCAGATCGTGGCTAC
CGAGGGTTACCAGAGCAGTGGATCTTCGTCCATCACTGTTCAGTAA
back to top

Coding sequence (CDS) from alignment at OGUI01000003.1:3557225..3557970+

>ATCC64974_22790-T1 ID=ATCC64974_22790-T1|Name=ATCC64974_22790-T1|organism=Aspergillus niger N402|type=CDS|length=1356bp|location=Sequence derived from alignment at OGUI01000003.1:3557225..3557970+ (Aspergillus niger N402)
ATGCTCACCAAGAACCTTCTCCTCTGCTTTGCCGCGGCTAAGGCTGCTCT
GGCTGTTCCCCACGACTCTGTGGCCCAGCGTTCGGATGCCTTGCACATGC
TCTCTGAGCGCTCGACCCCGAGCTCGACCGGCGAGAACAACGGCTTCTAC
TACTCCTTCTGGACCGACGGCGGTGGAGACGTGACCTACACCAACGGAGA
TGCTGGTGCCTACACTGTTGAGTGGTCCAACGTGGGCAACTTTGTCGGTG
GAAAGGGCTGGAACCCCGGAAGTGCGCAGGACATCACCTACAGCGGCACC
TTCACCCCTAGCGGCAACGGCTACCTCTCCGTCTATGGCTGGACCACTGA
CCCTCTGATCGAGTACTACATCGTCGAGTCCTACGGCGACTACAACCCCG
GCAGTGGAGGCACGTACAAGGGCACCGTCACCTCGGACGGATCCGTTTAC
GATATCTACACGGCTACCCGTACCAATGCTGCTTCCATTCAGGGAACCGC
TACCTTCACTCAGTACTGGTCCGTTCGCCAGAACAAGAGAGTTGGCGGAA
CCGTTACCACCTCCAACCACTTCAATGCTTGGGCTAAGCTGGGAATGAAC
CTGGGTACTCACAACTACCAGATCGTGGCTACCGAGGGTTACCAGAGCAG
TGGATCTTCGTCCATCACTGTTCAGTAAATGCTCACCAAGAACCTTCTCC
TCTGCTTTGCCGCGGCTAAGGCTGCTCTGGCTGTTCCCCACGACTCTGTG
GCCCAGCGTTCGGATGCCTTGCACATGCTCTCTGAGCGCTCGACCCCGAG
CTCGACCGGCGAGAACAACGGCTTCTACTACTCCTTCTGGACCGACGGCG
GTGGAGACGTGACCTACACCAACGGAGATGCTGGTGCCTACACTGTTGAG
TGGTCCAACGTGGGCAACTTTGTCGGTGGAAAGGGCTGGAACCCCGGAAG
TGCGCAGGACATCACCTACAGCGGCACCTTCACCCCTAGCGGCAACGGCT
ACCTCTCCGTCTATGGCTGGACCACTGACCCTCTGATCGAGTACTACATC
GTCGAGTCCTACGGCGACTACAACCCCGGCAGTGGAGGCACGTACAAGGG
CACCGTCACCTCGGACGGATCCGTTTACGATATCTACACGGCTACCCGTA
CCAATGCTGCTTCCATTCAGGGAACCGCTACCTTCACTCAGTACTGGTCC
GTTCGCCAGAACAAGAGAGTTGGCGGAACCGTTACCACCTCCAACCACTT
CAATGCTTGGGCTAAGCTGGGAATGAACCTGGGTACTCACAACTACCAGA
TCGTGGCTACCGAGGGTTACCAGAGCAGTGGATCTTCGTCCATCACTGTT
CAGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC64974_22790ATCC64974_22790Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_22790-T1.exon1ATCC64974_22790-T1.exon1Aspergillus niger N402exon
ATCC64974_22790-T1.exon2ATCC64974_22790-T1.exon2Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_22790-T1.cdsATCC64974_22790-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_22790-T1ATCC64974_22790-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteSECRETED:SignalP(1-18)
NoteCAZy:GH11
DBxrefInterPro:IPR013320
DBxrefInterPro:IPR033119
DBxrefInterPro:IPR018208
DBxrefInterPro:IPR033123
DBxrefInterPro:IPR013319
DBxrefInterPro:IPR001137
DBxrefPFAM:PF00457
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000003.1supercontigOGUI01000003.1:3557225..3557970 +
Powered by Drupal