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ATCC64974_24170-T1, ATCC64974_24170-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_24170-T1
Unique NameATCC64974_24170-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000003.1:4062226..4062854+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_24170-T1 ID=ATCC64974_24170-T1|Name=ATCC64974_24170-T1|organism=Aspergillus niger N402|type=mRNA|length=629bp|location=Sequence derived from alignment at OGUI01000003.1:4062226..4062854+ (Aspergillus niger N402)
ATGGCGTCACAACTTCTTCCTCTTGGTAATTGACCCTGTCAGAAGCCGCG
TATACATGGCGATCGTTTGATTGATTGTTTATTAACATGCACGACAGAAC
TGATCGACAAGTGTGTCGGATCCAGGATATGGGTCATCATGAAGAATGAC
AAAGGTCGGCATGAACATCTCCCTGCGGGGGAGGGGTAGACGATAAGCTA
GCTAGCTAACATGCATTCAGAATTCGCTGGAACGCTGCTTGGATTCGATG
ACTACGTTAGTAAGTATATTTCCTATCGTCGGTTTACGGTGTATGAGATA
GAGCGTGAACTGACCTGCTACAGACATGGTCTTGGAGGACGTGACTGAGT
TGTAAGTCCCTATATCTGCTGTCTGGATTGAGCTTCCTATCTCTGGAGCT
CTTCTTTCTTAGCTGTTGTTCTCTGTGTGTGAAGTAAAGACATTACTAAA
CATGCGACAGCGATTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTG
TTGAATGGAAACAACGTCTGCATGGTATGCCTCCAGCCGCGCCCTTTCTG
TTACTGATTATGCTCCATACTAACACTTTCAATTATCAAGTTGATCCCCG
GTGGTGAGGGACCCGTCGGTAGCTCTTAG
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Coding sequence (CDS) from alignment at OGUI01000003.1:4062226..4062854+

>ATCC64974_24170-T1 ID=ATCC64974_24170-T1|Name=ATCC64974_24170-T1|organism=Aspergillus niger N402|type=CDS|length=1512bp|location=Sequence derived from alignment at OGUI01000003.1:4062226..4062854+ (Aspergillus niger N402)
ATGGCGTCACAACTTCTTCCTCTTGAACTGATCGACAAGTGTGTCGGATC
CAGGATATGGGTCATCATGAAGAATGACAAAGAATTCGCTGGAACGCTGC
TTGGATTCGATGACTACGTTAACATGGTCTTGGAGGACGTGACTGAGTTC
GATTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGTTGAATGGAAA
CAACGTCTGCATGTTGATCCCCGGTGGTGAGGGACCCGTCGGTAGCTCTT
AGATGGCGTCACAACTTCTTCCTCTTGAACTGATCGACAAGTGTGTCGGA
TCCAGGATATGGGTCATCATGAAGAATGACAAAGAATTCGCTGGAACGCT
GCTTGGATTCGATGACTACGTTAACATGGTCTTGGAGGACGTGACTGAGT
TCGATTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGTTGAATGGA
AACAACGTCTGCATGTTGATCCCCGGTGGTGAGGGACCCGTCGGTAGCTC
TTAGATGGCGTCACAACTTCTTCCTCTTGAACTGATCGACAAGTGTGTCG
GATCCAGGATATGGGTCATCATGAAGAATGACAAAGAATTCGCTGGAACG
CTGCTTGGATTCGATGACTACGTTAACATGGTCTTGGAGGACGTGACTGA
GTTCGATTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGTTGAATG
GAAACAACGTCTGCATGTTGATCCCCGGTGGTGAGGGACCCGTCGGTAGC
TCTTAGATGGCGTCACAACTTCTTCCTCTTGAACTGATCGACAAGTGTGT
CGGATCCAGGATATGGGTCATCATGAAGAATGACAAAGAATTCGCTGGAA
CGCTGCTTGGATTCGATGACTACGTTAACATGGTCTTGGAGGACGTGACT
GAGTTCGATTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGTTGAA
TGGAAACAACGTCTGCATGTTGATCCCCGGTGGTGAGGGACCCGTCGGTA
GCTCTTAGATGGCGTCACAACTTCTTCCTCTTGAACTGATCGACAAGTGT
GTCGGATCCAGGATATGGGTCATCATGAAGAATGACAAAGAATTCGCTGG
AACGCTGCTTGGATTCGATGACTACGTTAACATGGTCTTGGAGGACGTGA
CTGAGTTCGATTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGTTG
AATGGAAACAACGTCTGCATGTTGATCCCCGGTGGTGAGGGACCCGTCGG
TAGCTCTTAGATGGCGTCACAACTTCTTCCTCTTGAACTGATCGACAAGT
GTGTCGGATCCAGGATATGGGTCATCATGAAGAATGACAAAGAATTCGCT
GGAACGCTGCTTGGATTCGATGACTACGTTAACATGGTCTTGGAGGACGT
GACTGAGTTCGATTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGT
TGAATGGAAACAACGTCTGCATGTTGATCCCCGGTGGTGAGGGACCCGTC
GGTAGCTCTTAG
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LSM5ATCC64974_24170Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_24170-T1ATCC64974_24170-T1-proteinAspergillus niger N402polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_24170-T1.exon1ATCC64974_24170-T1.exon1Aspergillus niger N402exon
ATCC64974_24170-T1.exon2ATCC64974_24170-T1.exon2Aspergillus niger N402exon
ATCC64974_24170-T1.exon3ATCC64974_24170-T1.exon3Aspergillus niger N402exon
ATCC64974_24170-T1.exon4ATCC64974_24170-T1.exon4Aspergillus niger N402exon
ATCC64974_24170-T1.exon5ATCC64974_24170-T1.exon5Aspergillus niger N402exon
ATCC64974_24170-T1.exon6ATCC64974_24170-T1.exon6Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_24170-T1.cdsATCC64974_24170-T1.cdsAspergillus niger N402CDS


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR033871
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductRNA-binding protein lsm5
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000003.1supercontigOGUI01000003.1:4062226..4062854 +
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