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ATCC64974_27590-T1, ATCC64974_27590-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_27590-T1
Unique NameATCC64974_27590-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000004.1:318490..320112-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_27590-T1 ID=ATCC64974_27590-T1|Name=ATCC64974_27590-T1|organism=Aspergillus niger N402|type=mRNA|length=1623bp|location=Sequence derived from alignment at OGUI01000004.1:318490..320112- (Aspergillus niger N402)
ATGTCTCTCGTGCCCGTCGACACCACTCTGCAAGTCCCACCTCCTGATCC
GGTTCAGAAGCCCCCTGAGGTGGCCATCACGCCCTGTGACCCATGGCCTG
CACCATACTATTTTGAAGGCGGCTTGCGCCGGGTGAAGCCCTACCACTAC
ACCTACAACACTTTTTGCAAGGAGCGCTGGCGGGGTCGTGAATTGGTGGA
CATTTTCCTGTCGGAGTTTCGCGACCGTCCCGCAGAGTACTACGTACGTT
CTCATCTCTTGGCTATTCTTTAAAGAATCATATACTGACATAGTTGTTCT
GGACCGCAGAGGAAAGCCCTACAAGATGGCCTTGTTGCCGTCAACGGCAC
GCCTGCTGGCCCCAATACCGTCGTCAAGAACGGCCAGATCATCTCGCATA
CCCTGCACCGTCACGAACCCCCCGTCACCGGGAAAGAGATTGGTATCATC
CACGAGGATGACGATCTGATTGTCATTGATAAGCCTGCCGGTGTGCCCGT
CCACTCCGCTGGTCGCTACCACTACAACTCCGTGCTCGAGATCATGCGCT
CTCAACGCCATCCGGAATGGGTCCCACGACCTTGCAACCGTTTGGACCGA
CTCACCTCCGGAGTCATGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAA
CATGACCGGAAAGCTCAAGGCCCGCACCCTCCAGAAGGAGTATGTGGCGC
GCGTCAAGGGAAAATTCCCTGACGGTGTCATCGTCTGCGATCAGCCCATC
ATGTCCGTGAGCCCAAAGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAA
GGAGGCAAAGACCAAGTTCCGTCGCCTGGCGTATATCCCGCCTCAAGCTC
CGGAGCCTCAGAGCGCTTCCGACGCAGAGGGACGGGTGGCGACCCCACCC
CCGATCTACACCAACGAAGACGAAGGATACAGTATCGTCCACTGTCTGCC
ATTGACTGGCCGCACGCATCAGATCCGCGTGCATCTCCAGTTCCTCGGAC
ACCCGATCTCGAACGATCCCATCTACTCCAATCGCAAAGTCTTCGGACCC
GATCTCGGAAAGAACGAGACCAGCGACGAGCGCGACAACGAGCTCATTGA
TAAGCTATGTAATATTGGCAAGACTGAAGTCCCCGACACCGTAAGCTATC
GGACACACCTTACCACAGTGCCTCTGGTACCGCCAGGCACGGACAACTCT
GTTGTGGAGGAGATAATGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATA
CCACAAGCGCAAAGGCGAGATGTTATCTGGCGAGAGATGCAAGATCTGCG
ACACAGAGCTCTACTCGGACCCTAGACCTGAGGATCTAGGCATCTTCCTC
CACGCCGCGGCGTACTCTGACAAAGAGGATGGCTGGAAATACACTAGCAA
GATGCCTACCTGGGCTCTGCCGCCTGATGGCGTGGAGGGACCGCGCGAGA
TGCCCGACTGGGTGTTTGTTCCCGAGGAAGAGGAGATTGTTATCGGACAT
GCTGTCTTGCCTGGCGCGGAGGACGGCTCGGAGTCGAATATCCCTGCTCT
TGTGCAGGGTGTCGGCCTAGTCGACATTTCGTCTGGTAGGAAGGCAGATG
CCGCTGCGCAGGCGACTGCTTGA
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Coding sequence (CDS) from alignment at OGUI01000004.1:318490..320112-

>ATCC64974_27590-T1 ID=ATCC64974_27590-T1|Name=ATCC64974_27590-T1|organism=Aspergillus niger N402|type=CDS|length=3114bp|location=Sequence derived from alignment at OGUI01000004.1:318490..320112- (Aspergillus niger N402)
AGGAAAGCCCTACAAGATGGCCTTGTTGCCGTCAACGGCACGCCTGCTGG
CCCCAATACCGTCGTCAAGAACGGCCAGATCATCTCGCATACCCTGCACC
GTCACGAACCCCCCGTCACCGGGAAAGAGATTGGTATCATCCACGAGGAT
GACGATCTGATTGTCATTGATAAGCCTGCCGGTGTGCCCGTCCACTCCGC
TGGTCGCTACCACTACAACTCCGTGCTCGAGATCATGCGCTCTCAACGCC
ATCCGGAATGGGTCCCACGACCTTGCAACCGTTTGGACCGACTCACCTCC
GGAGTCATGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAACATGACCGG
AAAGCTCAAGGCCCGCACCCTCCAGAAGGAGTATGTGGCGCGCGTCAAGG
GAAAATTCCCTGACGGTGTCATCGTCTGCGATCAGCCCATCATGTCCGTG
AGCCCAAAGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAAGGAGGCAAA
GACCAAGTTCCGTCGCCTGGCGTATATCCCGCCTCAAGCTCCGGAGCCTC
AGAGCGCTTCCGACGCAGAGGGACGGGTGGCGACCCCACCCCCGATCTAC
ACCAACGAAGACGAAGGATACAGTATCGTCCACTGTCTGCCATTGACTGG
CCGCACGCATCAGATCCGCGTGCATCTCCAGTTCCTCGGACACCCGATCT
CGAACGATCCCATCTACTCCAATCGCAAAGTCTTCGGACCCGATCTCGGA
AAGAACGAGACCAGCGACGAGCGCGACAACGAGCTCATTGATAAGCTATG
TAATATTGGCAAGACTGAAGTCCCCGACACCGTAAGCTATCGGACACACC
TTACCACAGTGCCTCTGGTACCGCCAGGCACGGACAACTCTGTTGTGGAG
GAGATAATGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATACCACAAGCG
CAAAGGCGAGATGTTATCTGGCGAGAGATGCAAGATCTGCGACACAGAGC
TCTACTCGGACCCTAGACCTGAGGATCTAGGCATCTTCCTCCACGCCGCG
GCGTACTCTGACAAAGAGGATGGCTGGAAATACACTAGCAAGATGCCTAC
CTGGGCTCTGCCGCCTGATGGCGTGGAGGGACCGCGCGAGATGCCCGACT
GGGTGTTTGTTCCCGAGGAAGAGGAGATTGTTATCGGACATGCTGTCTTG
CCTGGCGCGGAGGACGGCTCGGAGTCGAATATCCCTGCTCTTGTGCAGGG
TGTCGGCCTAGTCGACATTTCGTCTGGTAGGAAGGCAGATGCCGCTGCGC
AGGCGACTGCTTGAATGTCTCTCGTGCCCGTCGACACCACTCTGCAAGTC
CCACCTCCTGATCCGGTTCAGAAGCCCCCTGAGGTGGCCATCACGCCCTG
TGACCCATGGCCTGCACCATACTATTTTGAAGGCGGCTTGCGCCGGGTGA
AGCCCTACCACTACACCTACAACACTTTTTGCAAGGAGCGCTGGCGGGGT
CGTGAATTGGTGGACATTTTCCTGTCGGAGTTTCGCGACCGTCCCGCAGA
GTACTACAGGAAAGCCCTACAAGATGGCCTTGTTGCCGTCAACGGCACGC
CTGCTGGCCCCAATACCGTCGTCAAGAACGGCCAGATCATCTCGCATACC
CTGCACCGTCACGAACCCCCCGTCACCGGGAAAGAGATTGGTATCATCCA
CGAGGATGACGATCTGATTGTCATTGATAAGCCTGCCGGTGTGCCCGTCC
ACTCCGCTGGTCGCTACCACTACAACTCCGTGCTCGAGATCATGCGCTCT
CAACGCCATCCGGAATGGGTCCCACGACCTTGCAACCGTTTGGACCGACT
CACCTCCGGAGTCATGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAACA
TGACCGGAAAGCTCAAGGCCCGCACCCTCCAGAAGGAGTATGTGGCGCGC
GTCAAGGGAAAATTCCCTGACGGTGTCATCGTCTGCGATCAGCCCATCAT
GTCCGTGAGCCCAAAGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAAGG
AGGCAAAGACCAAGTTCCGTCGCCTGGCGTATATCCCGCCTCAAGCTCCG
GAGCCTCAGAGCGCTTCCGACGCAGAGGGACGGGTGGCGACCCCACCCCC
GATCTACACCAACGAAGACGAAGGATACAGTATCGTCCACTGTCTGCCAT
TGACTGGCCGCACGCATCAGATCCGCGTGCATCTCCAGTTCCTCGGACAC
CCGATCTCGAACGATCCCATCTACTCCAATCGCAAAGTCTTCGGACCCGA
TCTCGGAAAGAACGAGACCAGCGACGAGCGCGACAACGAGCTCATTGATA
AGCTATGTAATATTGGCAAGACTGAAGTCCCCGACACCGTAAGCTATCGG
ACACACCTTACCACAGTGCCTCTGGTACCGCCAGGCACGGACAACTCTGT
TGTGGAGGAGATAATGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATACC
ACAAGCGCAAAGGCGAGATGTTATCTGGCGAGAGATGCAAGATCTGCGAC
ACAGAGCTCTACTCGGACCCTAGACCTGAGGATCTAGGCATCTTCCTCCA
CGCCGCGGCGTACTCTGACAAAGAGGATGGCTGGAAATACACTAGCAAGA
TGCCTACCTGGGCTCTGCCGCCTGATGGCGTGGAGGGACCGCGCGAGATG
CCCGACTGGGTGTTTGTTCCCGAGGAAGAGGAGATTGTTATCGGACATGC
TGTCTTGCCTGGCGCGGAGGACGGCTCGGAGTCGAATATCCCTGCTCTTG
TGCAGGGTGTCGGCCTAGTCGACATTTCGTCTGGTAGGAAGGCAGATGCC
GCTGCGCAGGCGACTGCTTGAATGTCTCTCGTGCCCGTCGACACCACTCT
GCAAGTCCCACCTCCTGATCCGGTTCAGAAGCCCCCTGAGGTGGCCATCA
CGCCCTGTGACCCATGGCCTGCACCATACTATTTTGAAGGCGGCTTGCGC
CGGGTGAAGCCCTACCACTACACCTACAACACTTTTTGCAAGGAGCGCTG
GCGGGGTCGTGAATTGGTGGACATTTTCCTGTCGGAGTTTCGCGACCGTC
CCGCAGAGTACTAC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC64974_27590ATCC64974_27590Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_27590-T1ATCC64974_27590-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_27590-T1.cdsATCC64974_27590-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_27590-T1.exon2ATCC64974_27590-T1.exon2Aspergillus niger N402exon
ATCC64974_27590-T1.exon1ATCC64974_27590-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
DBxrefInterPro:IPR020103
DBxrefInterPro:IPR002942
DBxrefInterPro:IPR006224
DBxrefInterPro:IPR006225
DBxrefInterPro:IPR006145
DBxrefPFAM:PF00849
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000004.1supercontigOGUI01000004.1:318490..320112 -
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