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ATCC64974_27660-T1, ATCC64974_27660-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_27660-T1
Unique NameATCC64974_27660-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000004.1:340191..341275+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_27660-T1 ID=ATCC64974_27660-T1|Name=ATCC64974_27660-T1|organism=Aspergillus niger N402|type=mRNA|length=1085bp|location=Sequence derived from alignment at OGUI01000004.1:340191..341275+ (Aspergillus niger N402)
ATGCAGGCTGCCCAGCAGTCCTGGGGTACGTCCATCCCCAACCCCATCCC
CACCCCCACTCCATCTCACAGCACTCTAACCCCATAACCACAGAATTCGA
AAATGCCGTCACTCTCATAGACCCCCACCGAGACGCGCTCTACAAATACG
ATGAAGAGACACACAAAGCTCTTAGCGCTCAGCGCCCTTGGTCCAAAGAC
CCACACTACTTCAAATCGATCCGAATCTCCGCCGTCGCACTCCTCAAGAT
GGTAATGCACGCGCGGTCCGGCGGCTCCCTCGAAGTAATGGGCCTAATGC
AAGGCTATGTCCTGCCCGAAACCTTCGTGGTAACCGACGCCTTCCGACTT
CCCGTGGAGGGAACCGAAACGCGAGTCAACGCCCAAGACGAAGCCAACGA
GTACATGGTCTCATACCTACAGTCATGCCGGGACGCAGGACGGATGGAAA
ACGCAGTGGGCTGGTACCACAGTCATCCCGGGTACGGGTGCTGGTTATCG
GGCATTGATGTGACGACGCAGGATATGCAGCAGCTCGGGGGACCGTTTGT
GGCGGTGGTGGTTGATCCAGAGAGGACGATCTCAGCAGGGAAGGTGGATA
TTGGGGCATTTAGGACGTTTCCGAAGGATTATACGCCGCCGAAAGGGGAG
GGGGGTAGTGGTGCTGGGGAGGATGACTATCAGACGGTGCCGTTGAACAA
GGCGGAGGACTTTGGGGCACATGCGTCACATTATTATTCGCTGGAGGTGT
CGGTGTTTAAGAGTGCGTTGGATACGGAGATTCTGTCGTTGCTGTGGAAT
AAGTATTGGGTTGCGACGTTGAGTCAGAGTCCGTTGTTTACGACGAGGGA
TTATGGGAGTAAGCAGATGGTGGATTTGAGTCAGAAGATTAAGCGGGCTA
CGAGGGGCGTGGAGAGTAGTGCTTCGCGAGGGAATCTGGCGCAGGTTAAG
GATCCGCAGTTGGAGAGGGTGGCGAGGGACGGGCAGCGGATTGTCTCGGA
AGAAGTGAAGGGTTTGTTGGCGGCGGAAGTGAAGATGAAGCTGTTTCAAA
ATGTTGGGGAGGGGAATAGATCGGAGAAATCATGA
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Coding sequence (CDS) from alignment at OGUI01000004.1:340191..341275+

>ATCC64974_27660-T1 ID=ATCC64974_27660-T1|Name=ATCC64974_27660-T1|organism=Aspergillus niger N402|type=CDS|length=2034bp|location=Sequence derived from alignment at OGUI01000004.1:340191..341275+ (Aspergillus niger N402)
ATGCAGGCTGCCCAGCAGTCCTGGGAATTCGAAAATGCCGTCACTCTCAT
AGACCCCCACCGAGACGCGCTCTACAAATACGATGAAGAGACACACAAAG
CTCTTAGCGCTCAGCGCCCTTGGTCCAAAGACCCACACTACTTCAAATCG
ATCCGAATCTCCGCCGTCGCACTCCTCAAGATGGTAATGCACGCGCGGTC
CGGCGGCTCCCTCGAAGTAATGGGCCTAATGCAAGGCTATGTCCTGCCCG
AAACCTTCGTGGTAACCGACGCCTTCCGACTTCCCGTGGAGGGAACCGAA
ACGCGAGTCAACGCCCAAGACGAAGCCAACGAGTACATGGTCTCATACCT
ACAGTCATGCCGGGACGCAGGACGGATGGAAAACGCAGTGGGCTGGTACC
ACAGTCATCCCGGGTACGGGTGCTGGTTATCGGGCATTGATGTGACGACG
CAGGATATGCAGCAGCTCGGGGGACCGTTTGTGGCGGTGGTGGTTGATCC
AGAGAGGACGATCTCAGCAGGGAAGGTGGATATTGGGGCATTTAGGACGT
TTCCGAAGGATTATACGCCGCCGAAAGGGGAGGGGGGTAGTGGTGCTGGG
GAGGATGACTATCAGACGGTGCCGTTGAACAAGGCGGAGGACTTTGGGGC
ACATGCGTCACATTATTATTCGCTGGAGGTGTCGGTGTTTAAGAGTGCGT
TGGATACGGAGATTCTGTCGTTGCTGTGGAATAAGTATTGGGTTGCGACG
TTGAGTCAGAGTCCGTTGTTTACGACGAGGGATTATGGGAGTAAGCAGAT
GGTGGATTTGAGTCAGAAGATTAAGCGGGCTACGAGGGGCGTGGAGAGTA
GTGCTTCGCGAGGGAATCTGGCGCAGGTTAAGGATCCGCAGTTGGAGAGG
GTGGCGAGGGACGGGCAGCGGATTGTCTCGGAAGAAGTGAAGGGTTTGTT
GGCGGCGGAAGTGAAGATGAAGCTGTTTCAAAATGTTGGGGAGGGGAATA
GATCGGAGAAATCATGAATGCAGGCTGCCCAGCAGTCCTGGGAATTCGAA
AATGCCGTCACTCTCATAGACCCCCACCGAGACGCGCTCTACAAATACGA
TGAAGAGACACACAAAGCTCTTAGCGCTCAGCGCCCTTGGTCCAAAGACC
CACACTACTTCAAATCGATCCGAATCTCCGCCGTCGCACTCCTCAAGATG
GTAATGCACGCGCGGTCCGGCGGCTCCCTCGAAGTAATGGGCCTAATGCA
AGGCTATGTCCTGCCCGAAACCTTCGTGGTAACCGACGCCTTCCGACTTC
CCGTGGAGGGAACCGAAACGCGAGTCAACGCCCAAGACGAAGCCAACGAG
TACATGGTCTCATACCTACAGTCATGCCGGGACGCAGGACGGATGGAAAA
CGCAGTGGGCTGGTACCACAGTCATCCCGGGTACGGGTGCTGGTTATCGG
GCATTGATGTGACGACGCAGGATATGCAGCAGCTCGGGGGACCGTTTGTG
GCGGTGGTGGTTGATCCAGAGAGGACGATCTCAGCAGGGAAGGTGGATAT
TGGGGCATTTAGGACGTTTCCGAAGGATTATACGCCGCCGAAAGGGGAGG
GGGGTAGTGGTGCTGGGGAGGATGACTATCAGACGGTGCCGTTGAACAAG
GCGGAGGACTTTGGGGCACATGCGTCACATTATTATTCGCTGGAGGTGTC
GGTGTTTAAGAGTGCGTTGGATACGGAGATTCTGTCGTTGCTGTGGAATA
AGTATTGGGTTGCGACGTTGAGTCAGAGTCCGTTGTTTACGACGAGGGAT
TATGGGAGTAAGCAGATGGTGGATTTGAGTCAGAAGATTAAGCGGGCTAC
GAGGGGCGTGGAGAGTAGTGCTTCGCGAGGGAATCTGGCGCAGGTTAAGG
ATCCGCAGTTGGAGAGGGTGGCGAGGGACGGGCAGCGGATTGTCTCGGAA
GAAGTGAAGGGTTTGTTGGCGGCGGAAGTGAAGATGAAGCTGTTTCAAAA
TGTTGGGGAGGGGAATAGATCGGAGAAATCATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CSN5ATCC64974_27660Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_27660-T1.exon1ATCC64974_27660-T1.exon1Aspergillus niger N402exon
ATCC64974_27660-T1.exon2ATCC64974_27660-T1.exon2Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_27660-T1.cdsATCC64974_27660-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_27660-T1ATCC64974_27660-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09263RDD
NoteMEROPS:MER0122119
DBxrefInterPro:IPR037518
DBxrefInterPro:IPR040961
DBxrefInterPro:IPR000555
DBxrefPFAM:PF01398
DBxrefPFAM:PF18323
Productproteasome regulatory particle subunit RPN11
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000004.1supercontigOGUI01000004.1:340191..341275 +
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