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Sequences
The following sequences are available for this feature:
mRNA from alignment at OGUI01000004.1:586157..586755+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC64974_28430-T1 ID=ATCC64974_28430-T1|Name=ATCC64974_28430-T1|organism=Aspergillus niger N402|type=mRNA|length=599bp|location=Sequence derived from alignment at OGUI01000004.1:586157..586755+ (Aspergillus niger N402)
ATGAGTGTTCGTACTCTTCTATCCCTACTCCATTGACTCAAGCTTTATCT
CAGGTGTACACTTGTATTACTAAAGGAGTAAACTGACTCTGCGAATCTAG
TTCAACCCTGTCAACCCCCGGCCTTTCCTCCAGGCTAGGTACGCACCCGG
TCCCTTGTCGCTTGATCGCCCCGCCGCAATCCCATCCTATAACTTCCAAT
TTCTATTGAAAAATATCCTCTAATTCAAATCGCAGAGTCGGTACCGAGCT
CATCATCCGTCTGAAGTGGGGCCAAACGGAATACAAGGGCAAGCTTGAGA
GCATCGATTCGTACATGAACGTGCTGCTCCGTGATACGGAAGAGTTCATT
GACGGAAAGAACACGGGAACATTGGGTCTGGTCCTGATTAGGTGCGTTTA
TTCGGTCGCCTGCTATCTCGGGGGCTGGGGTTTCCTGATCCCAGTGCTGG
GATCTGCGCATCCGTTACCCCTCTCCGGAGATACATTTGGACGCATATTG
GAAGGATATTTGCTAACGCAATGCGCTGATAGGTGTAACAACATCCTCTG
GATGGGCTCTGCGGACAGCGTGGAAATGACGGACCTGGGACTACGATAG back to topCoding sequence (CDS) from alignment at OGUI01000004.1:586157..586755+ >ATCC64974_28430-T1 ID=ATCC64974_28430-T1|Name=ATCC64974_28430-T1|organism=Aspergillus niger N402|type=CDS|length=1068bp|location=Sequence derived from alignment at OGUI01000004.1:586157..586755+ (Aspergillus niger N402)
ATGAGTTTCAACCCTGTCAACCCCCGGCCTTTCCTCCAGGCTAGAGTCGG
TACCGAGCTCATCATCCGTCTGAAGTGGGGCCAAACGGAATACAAGGGCA
AGCTTGAGAGCATCGATTCGTACATGAACGTGCTGCTCCGTGATACGGAA
GAGTTCATTGACGGAAAGAACACGGGAACATTGGGTCTGGTCCTGATTAG
GTGTAACAACATCCTCTGGATGGGCTCTGCGGACAGCGTGGAAATGACGG
ACCTGGGACTACGATAGATGAGTTTCAACCCTGTCAACCCCCGGCCTTTC
CTCCAGGCTAGAGTCGGTACCGAGCTCATCATCCGTCTGAAGTGGGGCCA
AACGGAATACAAGGGCAAGCTTGAGAGCATCGATTCGTACATGAACGTGC
TGCTCCGTGATACGGAAGAGTTCATTGACGGAAAGAACACGGGAACATTG
GGTCTGGTCCTGATTAGGTGTAACAACATCCTCTGGATGGGCTCTGCGGA
CAGCGTGGAAATGACGGACCTGGGACTACGATAGATGAGTTTCAACCCTG
TCAACCCCCGGCCTTTCCTCCAGGCTAGAGTCGGTACCGAGCTCATCATC
CGTCTGAAGTGGGGCCAAACGGAATACAAGGGCAAGCTTGAGAGCATCGA
TTCGTACATGAACGTGCTGCTCCGTGATACGGAAGAGTTCATTGACGGAA
AGAACACGGGAACATTGGGTCTGGTCCTGATTAGGTGTAACAACATCCTC
TGGATGGGCTCTGCGGACAGCGTGGAAATGACGGACCTGGGACTACGATA
GATGAGTTTCAACCCTGTCAACCCCCGGCCTTTCCTCCAGGCTAGAGTCG
GTACCGAGCTCATCATCCGTCTGAAGTGGGGCCAAACGGAATACAAGGGC
AAGCTTGAGAGCATCGATTCGTACATGAACGTGCTGCTCCGTGATACGGA
AGAGTTCATTGACGGAAAGAACACGGGAACATTGGGTCTGGTCCTGATTA
GGTGTAACAACATCCTCTGGATGGGCTCTGCGGACAGCGTGGAAATGACG
GACCTGGGACTACGATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005681 | spliceosomal complex |
| GO:0005732 | small nucleolar ribonucleoprotein complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000387 | spliceosomal snRNP assembly |
| GO:0000398 | mRNA splicing, via spliceosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| ATCC64974_28430-T1 | ATCC64974_28430-T1-protein | Aspergillus niger N402 | polypeptide |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010920 |
| DBxref | InterPro:IPR034100 |
| DBxref | InterPro:IPR016487 |
| DBxref | InterPro:IPR001163 |
| DBxref | PFAM:PF01423 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| OGUI01000004.1 | supercontig | OGUI01000004.1:586157..586755 + |
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