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ATCC64974_28680-T1, ATCC64974_28680-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_28680-T1
Unique NameATCC64974_28680-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000004.1:647882..649022+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_28680-T1 ID=ATCC64974_28680-T1|Name=ATCC64974_28680-T1|organism=Aspergillus niger N402|type=mRNA|length=1141bp|location=Sequence derived from alignment at OGUI01000004.1:647882..649022+ (Aspergillus niger N402)
ATGCACTCGTTTGCTTCTCTTCTCGCCTACGGCCTGGTCGCCGGCGCCAC
CTTCGCTTCTGCCTCTCCTATCGAAGCTCGAGACAGCTGCACGTTCACCA
CCGCTGCCGCTGCTAAAGCGGGCAAGGCGAAATGCTCTACTATCACCCTT
AACAACATCGAAGTTCCAGCTGGAACCACCCTCGACCTGACCGGTCTCAC
CAGCGGTACCAAGGTCATCTTCGAGGGCACCACGACCTTCCAGTACGAAG
AATGGGCAGGCCCCTTGATCTCCATGAGTGGCGAACATATCACCGTCACT
GGTGCCTCCGGCCACCTCATCAATTGCGATGGTGCGCGCTGGTGGGATGG
CAAGGGAACCAGCGGAAAGAAGAAGCCCAAGTTCTTTTACGCCCATGGCC
TTGACTCCTCGTCTATTACTGGATTAAACATCAAAAACACCCCCCTTATG
GCGTTTAGTGTCCAGGCGAATGACATTACGTTTACCGATGTTACCATCAA
TAATGCGGATGGCGACACCCAGGGTGGACACAACACTGATGCGTTCGATG
TTGGCAACTCGGTCGGGGTGAATATCATTAAGCCTTGGGTCCATAACCAG
GATGACTGTCTTGCGGTTAACTCTGGCGAGGTAAGCAGCTCTGCATATAT
GCTTGATTCGTAATTATATTGATATTCTATAGAACATCTGGTTCACCGGC
GGCACCTGCATTGGCGGCCACGGTCTCTCCATCGGCTCTGTCGGCGACCG
CTCCAACAACGTCGTCAAGAACGTCACCATCGAACACTCCACCGTGAGCA
ATTCCGAAAACGCCGTCCGAATTAAGACCATCTCTGGCGCCACTGGCTCC
GTGTCCGAGATTACGTACTCCAACATCGTCATGTCTGGCATCTCCGATTA
CGGCGTGGTCATTCAGCAGGATTACGAAGACGGCAAGCCTACGGGTAAGC
CGACGAACGGTGTCACTATTCAGGATGTTAAGCTGGAGAGCGTGACTGGT
AGCGTGGATAGTGGGGCTACTGAGATCTATCTTCTTTGCGGGTCTGGTAG
CTGCTCGGACTGGACCTGGGACGATGTGAAAGTTACCGGGGGGAAGAAGT
CCACCGCTTGCAAGAACTTCCCTTCGGTGGCCTCTTGTTAG
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Coding sequence (CDS) from alignment at OGUI01000004.1:647882..649022+

>ATCC64974_28680-T1 ID=ATCC64974_28680-T1|Name=ATCC64974_28680-T1|organism=Aspergillus niger N402|type=CDS|length=2178bp|location=Sequence derived from alignment at OGUI01000004.1:647882..649022+ (Aspergillus niger N402)
ATGCACTCGTTTGCTTCTCTTCTCGCCTACGGCCTGGTCGCCGGCGCCAC
CTTCGCTTCTGCCTCTCCTATCGAAGCTCGAGACAGCTGCACGTTCACCA
CCGCTGCCGCTGCTAAAGCGGGCAAGGCGAAATGCTCTACTATCACCCTT
AACAACATCGAAGTTCCAGCTGGAACCACCCTCGACCTGACCGGTCTCAC
CAGCGGTACCAAGGTCATCTTCGAGGGCACCACGACCTTCCAGTACGAAG
AATGGGCAGGCCCCTTGATCTCCATGAGTGGCGAACATATCACCGTCACT
GGTGCCTCCGGCCACCTCATCAATTGCGATGGTGCGCGCTGGTGGGATGG
CAAGGGAACCAGCGGAAAGAAGAAGCCCAAGTTCTTTTACGCCCATGGCC
TTGACTCCTCGTCTATTACTGGATTAAACATCAAAAACACCCCCCTTATG
GCGTTTAGTGTCCAGGCGAATGACATTACGTTTACCGATGTTACCATCAA
TAATGCGGATGGCGACACCCAGGGTGGACACAACACTGATGCGTTCGATG
TTGGCAACTCGGTCGGGGTGAATATCATTAAGCCTTGGGTCCATAACCAG
GATGACTGTCTTGCGGTTAACTCTGGCGAGAACATCTGGTTCACCGGCGG
CACCTGCATTGGCGGCCACGGTCTCTCCATCGGCTCTGTCGGCGACCGCT
CCAACAACGTCGTCAAGAACGTCACCATCGAACACTCCACCGTGAGCAAT
TCCGAAAACGCCGTCCGAATTAAGACCATCTCTGGCGCCACTGGCTCCGT
GTCCGAGATTACGTACTCCAACATCGTCATGTCTGGCATCTCCGATTACG
GCGTGGTCATTCAGCAGGATTACGAAGACGGCAAGCCTACGGGTAAGCCG
ACGAACGGTGTCACTATTCAGGATGTTAAGCTGGAGAGCGTGACTGGTAG
CGTGGATAGTGGGGCTACTGAGATCTATCTTCTTTGCGGGTCTGGTAGCT
GCTCGGACTGGACCTGGGACGATGTGAAAGTTACCGGGGGGAAGAAGTCC
ACCGCTTGCAAGAACTTCCCTTCGGTGGCCTCTTGTTAGATGCACTCGTT
TGCTTCTCTTCTCGCCTACGGCCTGGTCGCCGGCGCCACCTTCGCTTCTG
CCTCTCCTATCGAAGCTCGAGACAGCTGCACGTTCACCACCGCTGCCGCT
GCTAAAGCGGGCAAGGCGAAATGCTCTACTATCACCCTTAACAACATCGA
AGTTCCAGCTGGAACCACCCTCGACCTGACCGGTCTCACCAGCGGTACCA
AGGTCATCTTCGAGGGCACCACGACCTTCCAGTACGAAGAATGGGCAGGC
CCCTTGATCTCCATGAGTGGCGAACATATCACCGTCACTGGTGCCTCCGG
CCACCTCATCAATTGCGATGGTGCGCGCTGGTGGGATGGCAAGGGAACCA
GCGGAAAGAAGAAGCCCAAGTTCTTTTACGCCCATGGCCTTGACTCCTCG
TCTATTACTGGATTAAACATCAAAAACACCCCCCTTATGGCGTTTAGTGT
CCAGGCGAATGACATTACGTTTACCGATGTTACCATCAATAATGCGGATG
GCGACACCCAGGGTGGACACAACACTGATGCGTTCGATGTTGGCAACTCG
GTCGGGGTGAATATCATTAAGCCTTGGGTCCATAACCAGGATGACTGTCT
TGCGGTTAACTCTGGCGAGAACATCTGGTTCACCGGCGGCACCTGCATTG
GCGGCCACGGTCTCTCCATCGGCTCTGTCGGCGACCGCTCCAACAACGTC
GTCAAGAACGTCACCATCGAACACTCCACCGTGAGCAATTCCGAAAACGC
CGTCCGAATTAAGACCATCTCTGGCGCCACTGGCTCCGTGTCCGAGATTA
CGTACTCCAACATCGTCATGTCTGGCATCTCCGATTACGGCGTGGTCATT
CAGCAGGATTACGAAGACGGCAAGCCTACGGGTAAGCCGACGAACGGTGT
CACTATTCAGGATGTTAAGCTGGAGAGCGTGACTGGTAGCGTGGATAGTG
GGGCTACTGAGATCTATCTTCTTTGCGGGTCTGGTAGCTGCTCGGACTGG
ACCTGGGACGATGTGAAAGTTACCGGGGGGAAGAAGTCCACCGCTTGCAA
GAACTTCCCTTCGGTGGCCTCTTGTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC64974_28680ATCC64974_28680Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_28680-T1.exon1ATCC64974_28680-T1.exon1Aspergillus niger N402exon
ATCC64974_28680-T1.exon2ATCC64974_28680-T1.exon2Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_28680-T1.cdsATCC64974_28680-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_28680-T1ATCC64974_28680-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteSECRETED:SignalP(1-21)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR012334
DBxrefInterPro:IPR006626
DBxrefPFAM:PF00295
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000004.1supercontigOGUI01000004.1:647882..649022 +
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