You are here

Home

ATCC64974_3750-T1, ATCC64974_3750-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_3750-T1
Unique NameATCC64974_3750-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000001.1:1137792..1138811+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_3750-T1 ID=ATCC64974_3750-T1|Name=ATCC64974_3750-T1|organism=Aspergillus niger N402|type=mRNA|length=1020bp|location=Sequence derived from alignment at OGUI01000001.1:1137792..1138811+ (Aspergillus niger N402)
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGTTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGTATGTTGTCCTGGAGTGCTTGGTGC
GATGTCCCGGCTTAGTAGCGCTAACTTTTTGCTGTATAGGCCGTATCCCC
ACCGATACCGCCAAGGAGTCTCGCATCTACCCTCTGCCTCACACCTATGT
CGTCAAGGACCTGGTTCCCGATTTGACCTACTTCTACAAGCAGTACAAGT
CGATCAAGCCTTACCTGCAGCGCGACACCCCGACCGCGGATGTAAGTGTT
GACAGCGTGTGCGAGCGATGTGGGATTTTTACTGATAAATATATAGGGTC
TCGAGAACCGCCAGAGCCCCGAGGAGCGTAAGAAGCTGGACGGTCTGTAC
GAGTGCATTCTGTGCGCTTGCTGCTCTACCTCCTGCCCCTCGTACTGGTG
GAACAGCGAGGAGTACCTTGGACCCGCTATCCTCCTCCAGTCCTACCGTT
GGTTGGCCGATTCCCGTGACGAGAAGACCGCCGAGCGTAAGGCCGCTCTC
GACAACAGCATGAGCGTGTACCGTTGCCACACCATTCTTAACTGCTCGCG
GACTTGCCCCAAGGGCCTGAACCCCGCACGGGCCATTGCGGAGATCAAGA
AGATGATGACTGCTCATTAG
back to top

Coding sequence (CDS) from alignment at OGUI01000001.1:1137792..1138811+

>ATCC64974_3750-T1 ID=ATCC64974_3750-T1|Name=ATCC64974_3750-T1|organism=Aspergillus niger N402|type=CDS|length=3348bp|location=Sequence derived from alignment at OGUI01000001.1:1137792..1138811+ (Aspergillus niger N402)
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAAGACTTTCCATGTC
TACCGTTGGAACCCCGATCAGCCCACCGAGAAGCCCAAGATGCAGACTTA
CTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTCGACGCGCTGATCC
GCATCAAGAACGAGATGGACCCCACCCTGACTTTCCGGAGAAGTTGCAGA
GAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACGGTGTCAACACCCT
GGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAGGAGTCTCGCATCT
ACCCTCTGCCTCACACCTATGTCGTCAAGGACCTGGTTCCCGATTTGACC
TACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACCTGCAGCGCGACAC
CCCGACCGCGGATGGTCTCGAGAACCGCCAGAGCCCCGAGGAGCGTAAGA
AGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTGCTGCTCTACCTCC
TGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTGGACCCGCTATCCT
CCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGACGAGAAGACCGCCG
AGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTACCGTTGCCACACC
ATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGAACCCCGCACGGGC
CATTGCGGAGATCAAGAAGATGATGACTGCTCATTAGATGGCTGCCCTTC
GCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCTGTTCCGCCCAGGC
GCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTTCCCAGGACCCTAG
CCCCTCGGAGCAGCCCCGGGTCAAGACTTTCCATGTCTACCGTTGGAACC
CCGATCAGCCCACCGAGAAGCCCAAGATGCAGACTTACTCCCTGGATCTG
AACAAGACCGGTCCCATGATGCTCGACGCGCTGATCCGCATCAAGAACGA
GATGGACCCCACCCTGACTTTCCGGAGAAGTTGCAGAGAGGGTATCTGTG
GAAGTTGCGCGATGAACATTGACGGTGTCAACACCCTGGCTTGCCTGTGC
CGTATCCCCACCGATACCGCCAAGGAGTCTCGCATCTACCCTCTGCCTCA
CACCTATGTCGTCAAGGACCTGGTTCCCGATTTGACCTACTTCTACAAGC
AGTACAAGTCGATCAAGCCTTACCTGCAGCGCGACACCCCGACCGCGGAT
GGTCTCGAGAACCGCCAGAGCCCCGAGGAGCGTAAGAAGCTGGACGGTCT
GTACGAGTGCATTCTGTGCGCTTGCTGCTCTACCTCCTGCCCCTCGTACT
GGTGGAACAGCGAGGAGTACCTTGGACCCGCTATCCTCCTCCAGTCCTAC
CGTTGGTTGGCCGATTCCCGTGACGAGAAGACCGCCGAGCGTAAGGCCGC
TCTCGACAACAGCATGAGCGTGTACCGTTGCCACACCATTCTTAACTGCT
CGCGGACTTGCCCCAAGGGCCTGAACCCCGCACGGGCCATTGCGGAGATC
AAGAAGATGATGACTGCTCATTAGATGGCTGCCCTTCGCACGACCTCGCG
CCTGTTCGCTTCCTCGAAGCCGCTGTTCCGCCCAGGCGCCTTTTCTCGCT
CCTATGCGACTGTTGACGCCCTTTCCCAGGACCCTAGCCCCTCGGAGCAG
CCCCGGGTCAAGACTTTCCATGTCTACCGTTGGAACCCCGATCAGCCCAC
CGAGAAGCCCAAGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTC
CCATGATGCTCGACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACC
CTGACTTTCCGGAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGAT
GAACATTGACGGTGTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCG
ATACCGCCAAGGAGTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTC
AAGGACCTGGTTCCCGATTTGACCTACTTCTACAAGCAGTACAAGTCGAT
CAAGCCTTACCTGCAGCGCGACACCCCGACCGCGGATGGTCTCGAGAACC
GCCAGAGCCCCGAGGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATT
CTGTGCGCTTGCTGCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGA
GGAGTACCTTGGACCCGCTATCCTCCTCCAGTCCTACCGTTGGTTGGCCG
ATTCCCGTGACGAGAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGC
ATGAGCGTGTACCGTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCC
CAAGGGCCTGAACCCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGA
CTGCTCATTAGATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCC
TCGAAGCCGCTGTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGT
TGACGCCCTTTCCCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAAGA
CTTTCCATGTCTACCGTTGGAACCCCGATCAGCCCACCGAGAAGCCCAAG
ATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTCGA
CGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCGGA
GAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACGGT
GTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAGGA
GTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTCAAGGACCTGGTTC
CCGATTTGACCTACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACCTG
CAGCGCGACACCCCGACCGCGGATGGTCTCGAGAACCGCCAGAGCCCCGA
GGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTGCT
GCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTGGA
CCCGCTATCCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGACGA
GAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTACC
GTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGAAC
CCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006099tricarboxylic acid cycle
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:00515372 iron, 2 sulfur cluster binding
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
GO:0016491oxidoreductase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SDH2ATCC64974_3750Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_3750-T1.exon1ATCC64974_3750-T1.exon1Aspergillus niger N402exon
ATCC64974_3750-T1.exon2ATCC64974_3750-T1.exon2Aspergillus niger N402exon
ATCC64974_3750-T1.exon3ATCC64974_3750-T1.exon3Aspergillus niger N402exon
ATCC64974_3750-T1.exon4ATCC64974_3750-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_3750-T1.cdsATCC64974_3750-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_3750-T1ATCC64974_3750-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09263X1F
DBxrefInterPro:IPR036010
DBxrefInterPro:IPR017896
DBxrefInterPro:IPR001041
DBxrefInterPro:IPR017900
DBxrefInterPro:IPR006058
DBxrefInterPro:IPR009051
DBxrefInterPro:IPR012675
DBxrefInterPro:IPR025192
DBxrefInterPro:IPR004489
DBxrefPFAM:PF13183
DBxrefPFAM:PF13534
DBxrefPFAM:PF13237
DBxrefPFAM:PF13085
Product subunit B
Productsuccinate dehydrogenase complex
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000001.1supercontigOGUI01000001.1:1137792..1138811 +
Powered by Drupal