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ATCC64974_40090-T1, ATCC64974_40090-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_40090-T1
Unique NameATCC64974_40090-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000006.1:384079..385105+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_40090-T1 ID=ATCC64974_40090-T1|Name=ATCC64974_40090-T1|organism=Aspergillus niger N402|type=mRNA|length=1027bp|location=Sequence derived from alignment at OGUI01000006.1:384079..385105+ (Aspergillus niger N402)
ATGGCTGACGCTCCCCGTGGACGTGGAGGATTCGGCTCTCGCGGTGACCG
TGGTGGTGACCGTGGCCGTGGCCGTGGTCGCCGTGGTCGTCGCGGTGGTG
CCAAGGAGCAGGAGAAGGAATGGCAGCCCGTCACCAAGCTCGGCCGTCTC
GTCAAGGCTGGCAAGATCACCAGCATGGAGCAGATCTACCTGCACTCCCT
GCCCGTGAAGGAGTACCAGATTGTGGACTTCTTCCTCCCCAAGCTGAAGG
ATGAGGTCATGAAGGTACGAACCGATCGCCCGATTACCGAATTGTCGACA
AGGAAGATCTACGATTGTGCGCGGGAAATAGGATTGAATGCGCGGGTGGA
ATTGATACGTGGATCGGAATTGCAGACATGATGGGATCAAAAAGGATATA
TCGAAAAAAAAAAATGGGAGGTGCTGACGGCTGGAAAATTTAGATCAAAC
CCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCCGTC
GTCGTCATCGGTGACTCCGAGGGTCACATCGGTCTCGGTATCAAGACCTC
CAAGGAAGTCGCTACCGCTATCCGTGCTGCCATCACCATCGCCAAGCTCA
GCGTTCTCCCCGTCCGTAGAGGTTACTGGGGTACCAACCTTGGTGAGCCT
CACTCTCTGCCCGTTAAGCAGAGCGCCAAGTGTGGTTCCGTCTCCGTCAG
AGTATGTCGCGACTCTTTCGATCCTCGATTTCGCTTTTCCGTCCGGCCAA
TATGCTAACCCGGTTATAGCTTATCCCCGCTCCCCGTGGTACCGGTCTCG
TTGCCTCCCCCGCTGTCAAGCGTCTGCTCCAGCTTGCCGGTGTCCAGGAC
GCCTACACCTGCTCTTCCGGTTCCACCAAGACCCTCGAGAACACTCTCAA
GGCTACTTTCCTTGCCGTCGTCAACACCTACGGCTTCCTCACCCCCAACC
TCTGGAAGGAGACTAAGCTCATCCGCAGCCCTCTGGAGGAGTTCGGTGAT
GTCCTGCGTCAGGGCAAGAAGTACTAG
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Coding sequence (CDS) from alignment at OGUI01000006.1:384079..385105+

>ATCC64974_40090-T1 ID=ATCC64974_40090-T1|Name=ATCC64974_40090-T1|organism=Aspergillus niger N402|type=CDS|length=2340bp|location=Sequence derived from alignment at OGUI01000006.1:384079..385105+ (Aspergillus niger N402)
ATGGCTGACGCTCCCCGTGGACGTGGAGGATTCGGCTCTCGCGGTGACCG
TGGTGGTGACCGTGGCCGTGGCCGTGGTCGCCGTGGTCGTCGCGGTGGTG
CCAAGGAGCAGGAGAAGGAATGGCAGCCCGTCACCAAGCTCGGCCGTCTC
GTCAAGGCTGGCAAGATCACCAGCATGGAGCAGATCTACCTGCACTCCCT
GCCCGTGAAGGAGTACCAGATTGTGGACTTCTTCCTCCCCAAGCTGAAGG
ATGAGGTCATGAAGATCAAACCCGTCCAGAAGCAGACCCGTGCCGGTCAG
CGTACCCGCTTCAAGGCCGTCGTCGTCATCGGTGACTCCGAGGGTCACAT
CGGTCTCGGTATCAAGACCTCCAAGGAAGTCGCTACCGCTATCCGTGCTG
CCATCACCATCGCCAAGCTCAGCGTTCTCCCCGTCCGTAGAGGTTACTGG
GGTACCAACCTTGGTGAGCCTCACTCTCTGCCCGTTAAGCAGAGCGCCAA
GTGTGGTTCCGTCTCCGTCAGACTTATCCCCGCTCCCCGTGGTACCGGTC
TCGTTGCCTCCCCCGCTGTCAAGCGTCTGCTCCAGCTTGCCGGTGTCCAG
GACGCCTACACCTGCTCTTCCGGTTCCACCAAGACCCTCGAGAACACTCT
CAAGGCTACTTTCCTTGCCGTCGTCAACACCTACGGCTTCCTCACCCCCA
ACCTCTGGAAGGAGACTAAGCTCATCCGCAGCCCTCTGGAGGAGTTCGGT
GATGTCCTGCGTCAGGGCAAGAAGTACTAGATGGCTGACGCTCCCCGTGG
ACGTGGAGGATTCGGCTCTCGCGGTGACCGTGGTGGTGACCGTGGCCGTG
GCCGTGGTCGCCGTGGTCGTCGCGGTGGTGCCAAGGAGCAGGAGAAGGAA
TGGCAGCCCGTCACCAAGCTCGGCCGTCTCGTCAAGGCTGGCAAGATCAC
CAGCATGGAGCAGATCTACCTGCACTCCCTGCCCGTGAAGGAGTACCAGA
TTGTGGACTTCTTCCTCCCCAAGCTGAAGGATGAGGTCATGAAGATCAAA
CCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCCGT
CGTCGTCATCGGTGACTCCGAGGGTCACATCGGTCTCGGTATCAAGACCT
CCAAGGAAGTCGCTACCGCTATCCGTGCTGCCATCACCATCGCCAAGCTC
AGCGTTCTCCCCGTCCGTAGAGGTTACTGGGGTACCAACCTTGGTGAGCC
TCACTCTCTGCCCGTTAAGCAGAGCGCCAAGTGTGGTTCCGTCTCCGTCA
GACTTATCCCCGCTCCCCGTGGTACCGGTCTCGTTGCCTCCCCCGCTGTC
AAGCGTCTGCTCCAGCTTGCCGGTGTCCAGGACGCCTACACCTGCTCTTC
CGGTTCCACCAAGACCCTCGAGAACACTCTCAAGGCTACTTTCCTTGCCG
TCGTCAACACCTACGGCTTCCTCACCCCCAACCTCTGGAAGGAGACTAAG
CTCATCCGCAGCCCTCTGGAGGAGTTCGGTGATGTCCTGCGTCAGGGCAA
GAAGTACTAGATGGCTGACGCTCCCCGTGGACGTGGAGGATTCGGCTCTC
GCGGTGACCGTGGTGGTGACCGTGGCCGTGGCCGTGGTCGCCGTGGTCGT
CGCGGTGGTGCCAAGGAGCAGGAGAAGGAATGGCAGCCCGTCACCAAGCT
CGGCCGTCTCGTCAAGGCTGGCAAGATCACCAGCATGGAGCAGATCTACC
TGCACTCCCTGCCCGTGAAGGAGTACCAGATTGTGGACTTCTTCCTCCCC
AAGCTGAAGGATGAGGTCATGAAGATCAAACCCGTCCAGAAGCAGACCCG
TGCCGGTCAGCGTACCCGCTTCAAGGCCGTCGTCGTCATCGGTGACTCCG
AGGGTCACATCGGTCTCGGTATCAAGACCTCCAAGGAAGTCGCTACCGCT
ATCCGTGCTGCCATCACCATCGCCAAGCTCAGCGTTCTCCCCGTCCGTAG
AGGTTACTGGGGTACCAACCTTGGTGAGCCTCACTCTCTGCCCGTTAAGC
AGAGCGCCAAGTGTGGTTCCGTCTCCGTCAGACTTATCCCCGCTCCCCGT
GGTACCGGTCTCGTTGCCTCCCCCGCTGTCAAGCGTCTGCTCCAGCTTGC
CGGTGTCCAGGACGCCTACACCTGCTCTTCCGGTTCCACCAAGACCCTCG
AGAACACTCTCAAGGCTACTTTCCTTGCCGTCGTCAACACCTACGGCTTC
CTCACCCCCAACCTCTGGAAGGAGACTAAGCTCATCCGCAGCCCTCTGGA
GGAGTTCGGTGATGTCCTGCGTCAGGGCAAGAAGTACTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015935small ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS2ATCC64974_40090Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_40090-T1.exon1ATCC64974_40090-T1.exon1Aspergillus niger N402exon
ATCC64974_40090-T1.exon2ATCC64974_40090-T1.exon2Aspergillus niger N402exon
ATCC64974_40090-T1.exon3ATCC64974_40090-T1.exon3Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_40090-T1.cdsATCC64974_40090-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_40090-T1ATCC64974_40090-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09264903
DBxrefInterPro:IPR020568
DBxrefInterPro:IPR018192
DBxrefInterPro:IPR014721
DBxrefInterPro:IPR013810
DBxrefInterPro:IPR005324
DBxrefInterPro:IPR005711
DBxrefPFAM:PF03719
DBxrefPFAM:PF00333
Product40S ribosomal protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000006.1supercontigOGUI01000006.1:384079..385105 +
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