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ATCC64974_4420-T1, ATCC64974_4420-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_4420-T1
Unique NameATCC64974_4420-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000001.1:1340939..1341675-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_4420-T1 ID=ATCC64974_4420-T1|Name=ATCC64974_4420-T1|organism=Aspergillus niger N402|type=mRNA|length=737bp|location=Sequence derived from alignment at OGUI01000001.1:1340939..1341675- (Aspergillus niger N402)
ATGGGTGTGCAAAAGAAGACTCGCAAGTTCGCGCAGGTATGTCTCTGTGG
CTTCGCAGCAGATACGGAACGGAAACTGATCCTACTGAATCTATAGATGA
AGCGCGCCATCAAAGCCCGTGATGAGCGACTGAAGAAGCCGGAAGCGAAA
AAGGAGACGCCCAAGGAGGATCAGCTGACTCGACAAGTCACCCAAGCTCC
TTCGAACATGTTCTTTGCCGCGAACACTGCCCTTGGCCCTCCCTACCACG
TGCTGGTCGATACCAACTTTGTTTCCCACGCCATTCGAGCCAAGCAGGAC
CTACTTACTTCGATGATGGACTTGTGAGTTGGAACACTATTTGGACTTTG
GATATATGCTAAGACTGGCTGCAGGCTGTACGCGAAGTGTATTCCGACCT
TCTCAGACTGCACTATCGCGGAATTGGAAAAGCTGGGTGACAAGTACCGC
CTCGCACTTCGGGTTGCCAAAGACCCTCGGTGGTCTAGGGTTAAGTGCTC
TCACAAGGGTACCTATGCAGATGACTGTATCGTGGATCGGGTGAGTGGTT
ACTCAAATTTTTCTTGGGTAGCACAGCGCGCTAACGACTCTTGTAGGTGA
CCAAGCATAGAATTTACATTGTGGCGACCAATGATCAAGATCTGTGTCGC
CGCCTGCGCAAGATTCCTGGTGTTCCGATCATGAAGGTTGCTAGGGGCAA
ATTCACCATCGAGAAGTTGCCCGATGCTTTGGATTAA
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Coding sequence (CDS) from alignment at OGUI01000001.1:1340939..1341675-

>ATCC64974_4420-T1 ID=ATCC64974_4420-T1|Name=ATCC64974_4420-T1|organism=Aspergillus niger N402|type=CDS|length=2280bp|location=Sequence derived from alignment at OGUI01000001.1:1340939..1341675- (Aspergillus niger N402)
GTGACCAAGCATAGAATTTACATTGTGGCGACCAATGATCAAGATCTGTG
TCGCCGCCTGCGCAAGATTCCTGGTGTTCCGATCATGAAGGTTGCTAGGG
GCAAATTCACCATCGAGAAGTTGCCCGATGCTTTGGATTAAGCTGTACGC
GAAGTGTATTCCGACCTTCTCAGACTGCACTATCGCGGAATTGGAAAAGC
TGGGTGACAAGTACCGCCTCGCACTTCGGGTTGCCAAAGACCCTCGGTGG
TCTAGGGTTAAGTGCTCTCACAAGGGTACCTATGCAGATGACTGTATCGT
GGATCGGATGAAGCGCGCCATCAAAGCCCGTGATGAGCGACTGAAGAAGC
CGGAAGCGAAAAAGGAGACGCCCAAGGAGGATCAGCTGACTCGACAAGTC
ACCCAAGCTCCTTCGAACATGTTCTTTGCCGCGAACACTGCCCTTGGCCC
TCCCTACCACGTGCTGGTCGATACCAACTTTGTTTCCCACGCCATTCGAG
CCAAGCAGGACCTACTTACTTCGATGATGGACTTATGGGTGTGCAAAAGA
AGACTCGCAAGTTCGCGCAGGTGACCAAGCATAGAATTTACATTGTGGCG
ACCAATGATCAAGATCTGTGTCGCCGCCTGCGCAAGATTCCTGGTGTTCC
GATCATGAAGGTTGCTAGGGGCAAATTCACCATCGAGAAGTTGCCCGATG
CTTTGGATTAAGCTGTACGCGAAGTGTATTCCGACCTTCTCAGACTGCAC
TATCGCGGAATTGGAAAAGCTGGGTGACAAGTACCGCCTCGCACTTCGGG
TTGCCAAAGACCCTCGGTGGTCTAGGGTTAAGTGCTCTCACAAGGGTACC
TATGCAGATGACTGTATCGTGGATCGGATGAAGCGCGCCATCAAAGCCCG
TGATGAGCGACTGAAGAAGCCGGAAGCGAAAAAGGAGACGCCCAAGGAGG
ATCAGCTGACTCGACAAGTCACCCAAGCTCCTTCGAACATGTTCTTTGCC
GCGAACACTGCCCTTGGCCCTCCCTACCACGTGCTGGTCGATACCAACTT
TGTTTCCCACGCCATTCGAGCCAAGCAGGACCTACTTACTTCGATGATGG
ACTTATGGGTGTGCAAAAGAAGACTCGCAAGTTCGCGCAGGTGACCAAGC
ATAGAATTTACATTGTGGCGACCAATGATCAAGATCTGTGTCGCCGCCTG
CGCAAGATTCCTGGTGTTCCGATCATGAAGGTTGCTAGGGGCAAATTCAC
CATCGAGAAGTTGCCCGATGCTTTGGATTAAGCTGTACGCGAAGTGTATT
CCGACCTTCTCAGACTGCACTATCGCGGAATTGGAAAAGCTGGGTGACAA
GTACCGCCTCGCACTTCGGGTTGCCAAAGACCCTCGGTGGTCTAGGGTTA
AGTGCTCTCACAAGGGTACCTATGCAGATGACTGTATCGTGGATCGGATG
AAGCGCGCCATCAAAGCCCGTGATGAGCGACTGAAGAAGCCGGAAGCGAA
AAAGGAGACGCCCAAGGAGGATCAGCTGACTCGACAAGTCACCCAAGCTC
CTTCGAACATGTTCTTTGCCGCGAACACTGCCCTTGGCCCTCCCTACCAC
GTGCTGGTCGATACCAACTTTGTTTCCCACGCCATTCGAGCCAAGCAGGA
CCTACTTACTTCGATGATGGACTTATGGGTGTGCAAAAGAAGACTCGCAA
GTTCGCGCAGGTGACCAAGCATAGAATTTACATTGTGGCGACCAATGATC
AAGATCTGTGTCGCCGCCTGCGCAAGATTCCTGGTGTTCCGATCATGAAG
GTTGCTAGGGGCAAATTCACCATCGAGAAGTTGCCCGATGCTTTGGATTA
AGCTGTACGCGAAGTGTATTCCGACCTTCTCAGACTGCACTATCGCGGAA
TTGGAAAAGCTGGGTGACAAGTACCGCCTCGCACTTCGGGTTGCCAAAGA
CCCTCGGTGGTCTAGGGTTAAGTGCTCTCACAAGGGTACCTATGCAGATG
ACTGTATCGTGGATCGGATGAAGCGCGCCATCAAAGCCCGTGATGAGCGA
CTGAAGAAGCCGGAAGCGAAAAAGGAGACGCCCAAGGAGGATCAGCTGAC
TCGACAAGTCACCCAAGCTCCTTCGAACATGTTCTTTGCCGCGAACACTG
CCCTTGGCCCTCCCTACCACGTGCTGGTCGATACCAACTTTGTTTCCCAC
GCCATTCGAGCCAAGCAGGACCTACTTACTTCGATGATGGACTTATGGGT
GTGCAAAAGAAGACTCGCAAGTTCGCGCAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0032040small-subunit processome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
FCF1ATCC64974_4420Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_4420-T1ATCC64974_4420-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_4420-T1.cdsATCC64974_4420-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_4420-T1.exon4ATCC64974_4420-T1.exon4Aspergillus niger N402exon
ATCC64974_4420-T1.exon3ATCC64974_4420-T1.exon3Aspergillus niger N402exon
ATCC64974_4420-T1.exon2ATCC64974_4420-T1.exon2Aspergillus niger N402exon
ATCC64974_4420-T1.exon1ATCC64974_4420-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG09264SET
DBxrefInterPro:IPR029060
DBxrefInterPro:IPR006984
DBxrefInterPro:IPR002716
DBxrefPFAM:PF18477
DBxrefPFAM:PF04900
ProductrRNA-processing protein fcf1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000001.1supercontigOGUI01000001.1:1340939..1341675 -
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