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ATCC64974_45270-T1, ATCC64974_45270-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_45270-T1
Unique NameATCC64974_45270-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000007.1:660079..661163+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_45270-T1 ID=ATCC64974_45270-T1|Name=ATCC64974_45270-T1|organism=Aspergillus niger N402|type=mRNA|length=1085bp|location=Sequence derived from alignment at OGUI01000007.1:660079..661163+ (Aspergillus niger N402)
ATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTCCTCCGCTCTCCC
CTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCACCGAGCAGGTTG
TTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACCCCCTCCCAGATC
GGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGTCAAGACTGTCAC
TGGTAAGATTCCCCTCTCAATTCTCAAATTGCGGGGATGGGAAGGATACT
AATATGTGGATGAATAGGTAACAAGATCCTCCGTATCTTGAAGTCCAACG
GTACGACATCACCGACATGTTCCCTTTCACCAGTCGCACCAGTTATATGA
GCATGTTGTGGATGTGAATATGGCAGCGGAATATGGAATAGGCGCGAGCA
GAGCAGCAGCTAGGACCCGGATTGGAATATATCCGGCGATTCGATTTCAG
CCAGGTCACGGGTTTGATTGATGGACAACGATACGATGTATTCTGCACGG
AAGTGAAGAAGAAGGAAGAGAACGAGGTTGAAACATACCCGGAATCGTTC
TCGACTCCGTATCGACATGGACACTCGCAAACCTACAGCCAATCGCAATC
GCAGCAATCCCGGCGCTCTCTGCCTCCCACCATCTCTACACCGCACACCC
ACAACATGTCCATAAAACTGGAGGGCACCAGAAGCAAAACTTCAACACCA
ACTCGCAGAAATGCAGTTGGATGTTGGAAGTTTCTTTTGCGTGATCCCGT
ATGCCTCTGCTTGGTCAAACCACAGGCTGACAGAGTGATCTATTAAACAG
GCCTTGCCCCCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAGGTA
TGCCATTCCCCATTTATCTGAAAACACGATGGTAGATTGAATACTAACAA
ACTGGTATTAGGCCGTCGCCGTCCGCAAGCACCTTGAGCGTAACCGCAAG
GACAAGGACAGCAAGTTCCGCCTGATTCTCATCGAGTCTCGTATCCACCG
TCTGTCTCGTTACTACAAGTCCGTCGGTGTCCTCCCCCCCACCTGGCGTT
ACGAGTCCGCCACTGCTTCCACCCTCGTTGCTTAA
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Coding sequence (CDS) from alignment at OGUI01000007.1:660079..661163+

>ATCC64974_45270-T1 ID=ATCC64974_45270-T1|Name=ATCC64974_45270-T1|organism=Aspergillus niger N402|type=CDS|length=1824bp|location=Sequence derived from alignment at OGUI01000007.1:660079..661163+ (Aspergillus niger N402)
ATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTCCTCCGCTCTCCC
CTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCACCGAGCAGGTTG
TTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACCCCCTCCCAGATC
GGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGTCAAGACTGTCAC
TGGTAACAAGATCCTCCGTATCTTGAAGTCCAACGGCCTTGCCCCCGAGC
TCCCCGAGGACCTGTACCACCTCATCAAGAAGGCCGTCGCCGTCCGCAAG
CACCTTGAGCGTAACCGCAAGGACAAGGACAGCAAGTTCCGCCTGATTCT
CATCGAGTCTCGTATCCACCGTCTGTCTCGTTACTACAAGTCCGTCGGTG
TCCTCCCCCCCACCTGGCGTTACGAGTCCGCCACTGCTTCCACCCTCGTT
GCTTAAATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTCCTCCGC
TCTCCCCTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCACCGAGC
AGGTTGTTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACCCCCTCC
CAGATCGGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGTCAAGAC
TGTCACTGGTAACAAGATCCTCCGTATCTTGAAGTCCAACGGCCTTGCCC
CCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAGGCCGTCGCCGTC
CGCAAGCACCTTGAGCGTAACCGCAAGGACAAGGACAGCAAGTTCCGCCT
GATTCTCATCGAGTCTCGTATCCACCGTCTGTCTCGTTACTACAAGTCCG
TCGGTGTCCTCCCCCCCACCTGGCGTTACGAGTCCGCCACTGCTTCCACC
CTCGTTGCTTAAATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTC
CTCCGCTCTCCCCTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCA
CCGAGCAGGTTGTTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACC
CCCTCCCAGATCGGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGT
CAAGACTGTCACTGGTAACAAGATCCTCCGTATCTTGAAGTCCAACGGCC
TTGCCCCCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAGGCCGTC
GCCGTCCGCAAGCACCTTGAGCGTAACCGCAAGGACAAGGACAGCAAGTT
CCGCCTGATTCTCATCGAGTCTCGTATCCACCGTCTGTCTCGTTACTACA
AGTCCGTCGGTGTCCTCCCCCCCACCTGGCGTTACGAGTCCGCCACTGCT
TCCACCCTCGTTGCTTAAATGGGTCGCCTTCACTCTAAGGGAAAGGGCAT
TTCGTCCTCCGCTCTCCCCTACTCTCGCACTCCCCCGAGCTGGTTCAAGG
CTTCCACCGAGCAGGTTGTTGAGCAGATCTGCAAGCTCGCCAAGAAGGGT
GCTACCCCCTCCCAGATCGGTGTTGTCCTCCGTGACAGCCACGGTGTTGC
CCAGGTCAAGACTGTCACTGGTAACAAGATCCTCCGTATCTTGAAGTCCA
ACGGCCTTGCCCCCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAG
GCCGTCGCCGTCCGCAAGCACCTTGAGCGTAACCGCAAGGACAAGGACAG
CAAGTTCCGCCTGATTCTCATCGAGTCTCGTATCCACCGTCTGTCTCGTT
ACTACAAGTCCGTCGGTGTCCTCCCCCCCACCTGGCGTTACGAGTCCGCC
ACTGCTTCCACCCTCGTTGCTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS13ATCC64974_45270Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_45270-T1.exon1ATCC64974_45270-T1.exon1Aspergillus niger N402exon
ATCC64974_45270-T1.exon2ATCC64974_45270-T1.exon2Aspergillus niger N402exon
ATCC64974_45270-T1.exon3ATCC64974_45270-T1.exon3Aspergillus niger N402exon
ATCC64974_45270-T1.exon4ATCC64974_45270-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_45270-T1.cdsATCC64974_45270-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_45270-T1ATCC64974_45270-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG0926514P
DBxrefInterPro:IPR009068
DBxrefInterPro:IPR023029
DBxrefInterPro:IPR000589
DBxrefInterPro:IPR012606
DBxrefPFAM:PF00312
DBxrefPFAM:PF08069
Productribosomal 40S subunit protein S13
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000007.1supercontigOGUI01000007.1:660079..661163 +
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