ATCC64974_480-T1, ATCC64974_480-T1 (mRNA) Aspergillus niger N402

Overview


Name	ATCC64974_480-T1
Unique Name	ATCC64974_480-T1
Type	mRNA
Organism	Aspergillus niger N402

Sequences

The following sequences are available for this feature:

mRNA from alignment at OGUI01000001.1:177999..179560-
coding sequence from alignment at OGUI01000001.1:177999..179560-

mRNA from alignment at OGUI01000001.1:177999..179560-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>ATCC64974_480-T1 ID=ATCC64974_480-T1|Name=ATCC64974_480-T1|organism=Aspergillus niger N402|type=mRNA|length=1562bp|location=Sequence derived from alignment at OGUI01000001.1:177999..179560- (Aspergillus niger N402)
ATGGCTGCCGCACCATCTTCTCGTCCCTTTGAATACCTCGAAAGCCTTGC
TGGCACTGTCTTCTACAAACTTTACCAGCAGCCATCAACGGCTCTCGCCA
TTTTCAGGCGCATGCTGCCTGATCTGGGTATGTGTCGCATGTGCATTCAC
CACTCCGGTGCTTCATCAACTAACTGCCTGACTAGCAAAATGCTTTGTCA
TGGCACTTCTCTACCTAAAGGATCCGCTCCCCGCGGCGGATCTGGAGGCT
TGGGTTAAATCGGAGAGCTTGAAGTAAGTGCGGGTCAAGCACCCTGGGAA
GGTTTCCGCAGTGATTGTGGTTAACGTGAGCCTCACACAGAGAACGCGAC
AATGCACTCTCCATCCTAGGAAGACTGCATATTTTATCCAACACTGTTAC
GGCGGATAATGTCCGCGCCTACAAAGTCACCGATCCCTTCGCCACTTCAT
TGCGACACGCTCTCACCGGCGCCGACCAAACACAATCTTTTGGCGTCCTT
TCACAAGTGCCTGTTGGCTCGGAAGTCTCGATCCCCGAACTTGATGAGTA
TGCGCGACGACAGTGGGAAGGAGTGCTGGGATACATGGTCGGTACTGGAG
GCATGGGAGGTCCCCAAGTGACCCTCAGCAAAGGCGTGAAGGAGCTCCTG
CAGGCGGGTCATCTGGTCGAGATCCGAGATCGTCGCGTCGAAATCACCCA
GGATGGGTTTGCCTTTGTCCTGCAAGATGTCAGCACGCAGGTGTGGCATA
TCTTGATTCTTTACGTCGAGAGCGCCAGCGCCATCAAGATGGACAGTGTC
GAAGTCCTCTCGTTCGTGTTCCTTCTCAGCAGTCTCGAACTCGGAAAATC
ATATGAAAAGAACCACCTCAGTTCGAAACAACTGCGCATGCTGACCGACC
TTGCCGACTTTGGTATCGTCTATCAAGAATCGCCGGATGCACCGCGTTTC
TACCCCACCCGTCTTGCAACCACCCTCACGTCCGACTCCAGCGCCTTGAG
CAACCCACTCTTGGGTTCCCTCTCCGGTCCTGCTGGCGAAGCCTCCAGCA
AAGCGGGTACGGGCTTCATCATTATCGAAACCAACTACCGTGTATACGCA
TACACCTCGTCTCCCCTACAGATCTCCCTGATTGCTCTGTTCACCACACT
GAAATACCGCTTCCCCAACCTCATCACCGGCAAAATCACCCGCCAATCCG
TCCGCCGGGCCGTCGAGATGGGCATCACCGCCGACCAAATCATTTCCTAT
CTCTCTACTCACGCCCACCCGCAAATGCGCAAGCACAACGTCTCCCGCTC
GACCTCAAACCAGGCCGGGATCCCCCCGTCAGTCCTCCCGCCAACCGTGG
TGGACCAGATTCGACTTTGGCAGCTGGAGCGGGACCGTGTCAAAGCTACG
TCCGGATTCCTTTTCAAGGACTTTGTCAGTCTGGCAGAATACGAAGCGCC
ATGTCGCTATGCCGAAGAAATCGGTGTTCTGGCATGGAAGTCGGATCGCA
AACGCATGTTCTTCGTGACGAGGCATGAACAAGTGGCTGCGTTCTTAAGG
AGCCGGAAATAA

Coding sequence (CDS) from alignment at OGUI01000001.1:177999..179560-

>ATCC64974_480-T1 ID=ATCC64974_480-T1|Name=ATCC64974_480-T1|organism=Aspergillus niger N402|type=CDS|length=4311bp|location=Sequence derived from alignment at OGUI01000001.1:177999..179560- (Aspergillus niger N402)
AGAACGCGACAATGCACTCTCCATCCTAGGAAGACTGCATATTTTATCCA
ACACTGTTACGGCGGATAATGTCCGCGCCTACAAAGTCACCGATCCCTTC
GCCACTTCATTGCGACACGCTCTCACCGGCGCCGACCAAACACAATCTTT
TGGCGTCCTTTCACAAGTGCCTGTTGGCTCGGAAGTCTCGATCCCCGAAC
TTGATGAGTATGCGCGACGACAGTGGGAAGGAGTGCTGGGATACATGGTC
GGTACTGGAGGCATGGGAGGTCCCCAAGTGACCCTCAGCAAAGGCGTGAA
GGAGCTCCTGCAGGCGGGTCATCTGGTCGAGATCCGAGATCGTCGCGTCG
AAATCACCCAGGATGGGTTTGCCTTTGTCCTGCAAGATGTCAGCACGCAG
GTGTGGCATATCTTGATTCTTTACGTCGAGAGCGCCAGCGCCATCAAGAT
GGACAGTGTCGAAGTCCTCTCGTTCGTGTTCCTTCTCAGCAGTCTCGAAC
TCGGAAAATCATATGAAAAGAACCACCTCAGTTCGAAACAACTGCGCATG
CTGACCGACCTTGCCGACTTTGGTATCGTCTATCAAGAATCGCCGGATGC
ACCGCGTTTCTACCCCACCCGTCTTGCAACCACCCTCACGTCCGACTCCA
GCGCCTTGAGCAACCCACTCTTGGGTTCCCTCTCCGGTCCTGCTGGCGAA
GCCTCCAGCAAAGCGGGTACGGGCTTCATCATTATCGAAACCAACTACCG
TGTATACGCATACACCTCGTCTCCCCTACAGATCTCCCTGATTGCTCTGT
TCACCACACTGAAATACCGCTTCCCCAACCTCATCACCGGCAAAATCACC
CGCCAATCCGTCCGCCGGGCCGTCGAGATGGGCATCACCGCCGACCAAAT
CATTTCCTATCTCTCTACTCACGCCCACCCGCAAATGCGCAAGCACAACG
TCTCCCGCTCGACCTCAAACCAGGCCGGGATCCCCCCGTCAGTCCTCCCG
CCAACCGTGGTGGACCAGATTCGACTTTGGCAGCTGGAGCGGGACCGTGT
CAAAGCTACGTCCGGATTCCTTTTCAAGGACTTTGTCAGTCTGGCAGAAT
ACGAAGCGCCATGTCGCTATGCCGAAGAAATCGGTGTTCTGGCATGGAAG
TCGGATCGCAAACGCATGTTCTTCGTGACGAGGCATGAACAAGTGGCTGC
GTTCTTAAGGAGCCGGAAATAACAAAATGCTTTGTCATGGCACTTCTCTA
CCTAAAGGATCCGCTCCCCGCGGCGGATCTGGAGGCTTGGGTTAAATCGG
AGAGCTTGAAATGGCTGCCGCACCATCTTCTCGTCCCTTTGAATACCTCG
AAAGCCTTGCTGGCACTGTCTTCTACAAACTTTACCAGCAGCCATCAACG
GCTCTCGCCATTTTCAGGCGCATGCTGCCTGATCTGGAGAACGCGACAAT
GCACTCTCCATCCTAGGAAGACTGCATATTTTATCCAACACTGTTACGGC
GGATAATGTCCGCGCCTACAAAGTCACCGATCCCTTCGCCACTTCATTGC
GACACGCTCTCACCGGCGCCGACCAAACACAATCTTTTGGCGTCCTTTCA
CAAGTGCCTGTTGGCTCGGAAGTCTCGATCCCCGAACTTGATGAGTATGC
GCGACGACAGTGGGAAGGAGTGCTGGGATACATGGTCGGTACTGGAGGCA
TGGGAGGTCCCCAAGTGACCCTCAGCAAAGGCGTGAAGGAGCTCCTGCAG
GCGGGTCATCTGGTCGAGATCCGAGATCGTCGCGTCGAAATCACCCAGGA
TGGGTTTGCCTTTGTCCTGCAAGATGTCAGCACGCAGGTGTGGCATATCT
TGATTCTTTACGTCGAGAGCGCCAGCGCCATCAAGATGGACAGTGTCGAA
GTCCTCTCGTTCGTGTTCCTTCTCAGCAGTCTCGAACTCGGAAAATCATA
TGAAAAGAACCACCTCAGTTCGAAACAACTGCGCATGCTGACCGACCTTG
CCGACTTTGGTATCGTCTATCAAGAATCGCCGGATGCACCGCGTTTCTAC
CCCACCCGTCTTGCAACCACCCTCACGTCCGACTCCAGCGCCTTGAGCAA
CCCACTCTTGGGTTCCCTCTCCGGTCCTGCTGGCGAAGCCTCCAGCAAAG
CGGGTACGGGCTTCATCATTATCGAAACCAACTACCGTGTATACGCATAC
ACCTCGTCTCCCCTACAGATCTCCCTGATTGCTCTGTTCACCACACTGAA
ATACCGCTTCCCCAACCTCATCACCGGCAAAATCACCCGCCAATCCGTCC
GCCGGGCCGTCGAGATGGGCATCACCGCCGACCAAATCATTTCCTATCTC
TCTACTCACGCCCACCCGCAAATGCGCAAGCACAACGTCTCCCGCTCGAC
CTCAAACCAGGCCGGGATCCCCCCGTCAGTCCTCCCGCCAACCGTGGTGG
ACCAGATTCGACTTTGGCAGCTGGAGCGGGACCGTGTCAAAGCTACGTCC
GGATTCCTTTTCAAGGACTTTGTCAGTCTGGCAGAATACGAAGCGCCATG
TCGCTATGCCGAAGAAATCGGTGTTCTGGCATGGAAGTCGGATCGCAAAC
GCATGTTCTTCGTGACGAGGCATGAACAAGTGGCTGCGTTCTTAAGGAGC
CGGAAATAACAAAATGCTTTGTCATGGCACTTCTCTACCTAAAGGATCCG
CTCCCCGCGGCGGATCTGGAGGCTTGGGTTAAATCGGAGAGCTTGAAATG
GCTGCCGCACCATCTTCTCGTCCCTTTGAATACCTCGAAAGCCTTGCTGG
CACTGTCTTCTACAAACTTTACCAGCAGCCATCAACGGCTCTCGCCATTT
TCAGGCGCATGCTGCCTGATCTGGAGAACGCGACAATGCACTCTCCATCC
TAGGAAGACTGCATATTTTATCCAACACTGTTACGGCGGATAATGTCCGC
GCCTACAAAGTCACCGATCCCTTCGCCACTTCATTGCGACACGCTCTCAC
CGGCGCCGACCAAACACAATCTTTTGGCGTCCTTTCACAAGTGCCTGTTG
GCTCGGAAGTCTCGATCCCCGAACTTGATGAGTATGCGCGACGACAGTGG
GAAGGAGTGCTGGGATACATGGTCGGTACTGGAGGCATGGGAGGTCCCCA
AGTGACCCTCAGCAAAGGCGTGAAGGAGCTCCTGCAGGCGGGTCATCTGG
TCGAGATCCGAGATCGTCGCGTCGAAATCACCCAGGATGGGTTTGCCTTT
GTCCTGCAAGATGTCAGCACGCAGGTGTGGCATATCTTGATTCTTTACGT
CGAGAGCGCCAGCGCCATCAAGATGGACAGTGTCGAAGTCCTCTCGTTCG
TGTTCCTTCTCAGCAGTCTCGAACTCGGAAAATCATATGAAAAGAACCAC
CTCAGTTCGAAACAACTGCGCATGCTGACCGACCTTGCCGACTTTGGTAT
CGTCTATCAAGAATCGCCGGATGCACCGCGTTTCTACCCCACCCGTCTTG
CAACCACCCTCACGTCCGACTCCAGCGCCTTGAGCAACCCACTCTTGGGT
TCCCTCTCCGGTCCTGCTGGCGAAGCCTCCAGCAAAGCGGGTACGGGCTT
CATCATTATCGAAACCAACTACCGTGTATACGCATACACCTCGTCTCCCC
TACAGATCTCCCTGATTGCTCTGTTCACCACACTGAAATACCGCTTCCCC
AACCTCATCACCGGCAAAATCACCCGCCAATCCGTCCGCCGGGCCGTCGA
GATGGGCATCACCGCCGACCAAATCATTTCCTATCTCTCTACTCACGCCC
ACCCGCAAATGCGCAAGCACAACGTCTCCCGCTCGACCTCAAACCAGGCC
GGGATCCCCCCGTCAGTCCTCCCGCCAACCGTGGTGGACCAGATTCGACT
TTGGCAGCTGGAGCGGGACCGTGTCAAAGCTACGTCCGGATTCCTTTTCA
AGGACTTTGTCAGTCTGGCAGAATACGAAGCGCCATGTCGCTATGCCGAA
GAAATCGGTGTTCTGGCATGGAAGTCGGATCGCAAACGCATGTTCTTCGT
GACGAGGCATGAACAAGTGGCTGCGTTCTTAAGGAGCCGGAAATAACAAA
ATGCTTTGTCATGGCACTTCTCTACCTAAAGGATCCGCTCCCCGCGGCGG
ATCTGGAGGCTTGGGTTAAATCGGAGAGCTTGAAATGGCTGCCGCACCAT
CTTCTCGTCCCTTTGAATACCTCGAAAGCCTTGCTGGCACTGTCTTCTAC
AAACTTTACCAGCAGCCATCAACGGCTCTCGCCATTTTCAGGCGCATGCT
GCCTGATCTGG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0000439	transcription factor TFIIH core complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0001671	ATPase activator activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006289	nucleotide-excision repair

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
ATCC64974_480	ATCC64974_480	Aspergillus niger N402	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
ATCC64974_480-T1	ATCC64974_480-T1-protein	Aspergillus niger N402	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
ATCC64974_480-T1.cds	ATCC64974_480-T1.cds	Aspergillus niger N402	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
ATCC64974_480-T1.exon3	ATCC64974_480-T1.exon3	Aspergillus niger N402	exon
ATCC64974_480-T1.exon2	ATCC64974_480-T1.exon2	Aspergillus niger N402	exon
ATCC64974_480-T1.exon1	ATCC64974_480-T1.exon1	Aspergillus niger N402	exon

Properties


Property Name	Value
Note	BUSCO:EOG09261QR8
DBxref	InterPro:IPR040662
DBxref	InterPro:IPR004598
DBxref	PFAM:PF18307
DBxref	PFAM:PF03849
Product	hypothetical protein

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Aspergillus niger N402 whole genome analysis	2021-11-01

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
OGUI01000001.1	supercontig	OGUI01000001.1:177999..179560 -

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ATCC64974_480-T1, ATCC64974_480-T1 (mRNA) Aspergillus niger N402

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ATCC64974_480-T1, ATCC64974_480-T1 (mRNA) Aspergillus niger N402