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ATCC64974_49440-T1, ATCC64974_49440-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_49440-T1
Unique NameATCC64974_49440-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000007.1:2021127..2022116-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_49440-T1 ID=ATCC64974_49440-T1|Name=ATCC64974_49440-T1|organism=Aspergillus niger N402|type=mRNA|length=990bp|location=Sequence derived from alignment at OGUI01000007.1:2021127..2022116- (Aspergillus niger N402)
ATGGCGACCGAGTTGACCGTCCAGTCGGAACGTGCGTTCCAGAAGCAGCC
TCACATCTTCGTCAACCCCAAGGCTCAGGCGAAGAGCAAGAAGGTTGGCA
CCGGCCGCCGTTGGTACAAGGATGTCGGTCTGGGTTTCCGTACCCCCAAG
ACCGCCATTGAGGGCTCCTACATCGGTATGCACGACCTATGTTGAAATTT
TATTTGCGGCGTTATCGACTTCCGATCATGCGGGACCAAGACTGGGAATC
TTTTGGAGGCTATGGCGAGATGAGAATATGCCGCATGGAGAAGAGAGAAA
TCACCTGGAAAGCGCCAGCATGAGTCTACGATAAAATGCAACTATCTTCT
GCAAAGGATCGGGATGGAATGCGACAAGAGAAGGAATCAAAGATCAGACC
TGGAAAAAGCGCTTGGCGACAGATTTGCGGAACCCGGTTATTCTCATCTC
TCAAAGGCTCCGGAGAAGTCCAGTCATGTCGTTTGAAATCTCCAGGTGGG
ACATATCACTGATATCGAACAGACAAGAAGTGCCCCTTCACCGGTCTGGT
TTCCATCCGTGGCCGTATCCTGACCGGCCGTGTCGTCTCCACCAAGATGC
ACCGTACCATCGTCATCCGCCGTGAATACCTCCACTACGTCCCCAAGTAC
AACCGTTACGAGAAGAGACACAAGAACCTTGCCGCTCACGTCTCTCCCGC
TTTCCGTGTTGAGGAAGGTGACTGGGTCACCGTCGGCCAGTGCCGCCCCC
TGAGCAAGACTGTACGTCAAACTTTCCTCGGGATATCTTCTATGGTTACT
GGTGGCAAATGCATTCCTTTCCTATACGCCTGAAAGGATATGGATGATGT
CCAGCGCTATCGAAGATATTCTACATGGATCGCAAAAATATATACGTCAG
ATGCGCTAACTTACTATTCAGGTCCGCTTCAACGTCCTCCGTGTCCTGCC
CCGTACCGGCAAGGCCGTCAAGGCTTTCTCCAAGTTCTAA
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Coding sequence (CDS) from alignment at OGUI01000007.1:2021127..2022116-

>ATCC64974_49440-T1 ID=ATCC64974_49440-T1|Name=ATCC64974_49440-T1|organism=Aspergillus niger N402|type=CDS|length=1449bp|location=Sequence derived from alignment at OGUI01000007.1:2021127..2022116- (Aspergillus niger N402)
GTCCGCTTCAACGTCCTCCGTGTCCTGCCCCGTACCGGCAAGGCCGTCAA
GGCTTTCTCCAAGTTCTAAACAAGAAGTGCCCCTTCACCGGTCTGGTTTC
CATCCGTGGCCGTATCCTGACCGGCCGTGTCGTCTCCACCAAGATGCACC
GTACCATCGTCATCCGCCGTGAATACCTCCACTACGTCCCCAAGTACAAC
CGTTACGAGAAGAGACACAAGAACCTTGCCGCTCACGTCTCTCCCGCTTT
CCGTGTTGAGGAAGGTGACTGGGTCACCGTCGGCCAGTGCCGCCCCCTGA
GCAAGACTATGGCGACCGAGTTGACCGTCCAGTCGGAACGTGCGTTCCAG
AAGCAGCCTCACATCTTCGTCAACCCCAAGGCTCAGGCGAAGAGCAAGAA
GGTTGGCACCGGCCGCCGTTGGTACAAGGATGTCGGTCTGGGTTTCCGTA
CCCCCAAGACCGCCATTGAGGGCTCCTACATCGGTCCGCTTCAACGTCCT
CCGTGTCCTGCCCCGTACCGGCAAGGCCGTCAAGGCTTTCTCCAAGTTCT
AAACAAGAAGTGCCCCTTCACCGGTCTGGTTTCCATCCGTGGCCGTATCC
TGACCGGCCGTGTCGTCTCCACCAAGATGCACCGTACCATCGTCATCCGC
CGTGAATACCTCCACTACGTCCCCAAGTACAACCGTTACGAGAAGAGACA
CAAGAACCTTGCCGCTCACGTCTCTCCCGCTTTCCGTGTTGAGGAAGGTG
ACTGGGTCACCGTCGGCCAGTGCCGCCCCCTGAGCAAGACTATGGCGACC
GAGTTGACCGTCCAGTCGGAACGTGCGTTCCAGAAGCAGCCTCACATCTT
CGTCAACCCCAAGGCTCAGGCGAAGAGCAAGAAGGTTGGCACCGGCCGCC
GTTGGTACAAGGATGTCGGTCTGGGTTTCCGTACCCCCAAGACCGCCATT
GAGGGCTCCTACATCGGTCCGCTTCAACGTCCTCCGTGTCCTGCCCCGTA
CCGGCAAGGCCGTCAAGGCTTTCTCCAAGTTCTAAACAAGAAGTGCCCCT
TCACCGGTCTGGTTTCCATCCGTGGCCGTATCCTGACCGGCCGTGTCGTC
TCCACCAAGATGCACCGTACCATCGTCATCCGCCGTGAATACCTCCACTA
CGTCCCCAAGTACAACCGTTACGAGAAGAGACACAAGAACCTTGCCGCTC
ACGTCTCTCCCGCTTTCCGTGTTGAGGAAGGTGACTGGGTCACCGTCGGC
CAGTGCCGCCCCCTGAGCAAGACTATGGCGACCGAGTTGACCGTCCAGTC
GGAACGTGCGTTCCAGAAGCAGCCTCACATCTTCGTCAACCCCAAGGCTC
AGGCGAAGAGCAAGAAGGTTGGCACCGGCCGCCGTTGGTACAAGGATGTC
GGTCTGGGTTTCCGTACCCCCAAGACCGCCATTGAGGGCTCCTACATCG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS11AATCC64974_49440Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_49440-T1ATCC64974_49440-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_49440-T1.cdsATCC64974_49440-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_49440-T1.exon3ATCC64974_49440-T1.exon3Aspergillus niger N402exon
ATCC64974_49440-T1.exon2ATCC64974_49440-T1.exon2Aspergillus niger N402exon
ATCC64974_49440-T1.exon1ATCC64974_49440-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG092653NM
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR019979
DBxrefInterPro:IPR028333
DBxrefInterPro:IPR032440
DBxrefInterPro:IPR000266
DBxrefPFAM:PF16205
DBxrefPFAM:PF00366
Productribosomal 40S subunit protein S11A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000007.1supercontigOGUI01000007.1:2021127..2022116 -
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