You are here

Home

ATCC64974_51620-T1, ATCC64974_51620-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_51620-T1
Unique NameATCC64974_51620-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000007.1:2799608..2800605-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_51620-T1 ID=ATCC64974_51620-T1|Name=ATCC64974_51620-T1|organism=Aspergillus niger N402|type=mRNA|length=998bp|location=Sequence derived from alignment at OGUI01000007.1:2799608..2800605- (Aspergillus niger N402)
ATGGACTTGAAAAACCTCTCCAGCAATTGGAAGAAACTCCAGGGGACGCT
GAAAAAGGAAAGCGTCTCCGCCACGAAACGGAAACCTTCAGACCGCGAGA
CGGAGAATGGTGTGGTAAAGAAACGGAAAAGAGAAACTGTCGACGGACAA
CAAAAACCTGAGCGCAAACCGGTCTCAACCAAGAGAAAGAAGATGTCTAC
GAACGGTACTGATGGCGGCGAGAATGGCACCGAGGAGCCTACAAAGAAGT
CGATCTCTCGGAGGAATTCTACGGCCGCTGTTGCGGAATCAAAGCCGAAG
ATTAATGAAGGCCGTTCACCTACGTGAGCACACCTCTTGTTGCTGTTTTG
CGAGAGTTCTTTCTCTGTAATAACTACTAACGTTCTATTAGCGCGGAGCT
AGGAAAATATGTTGCGATGGATTGCGAAATGGTGGGCGTTGGCCCCAATC
CAGATCACGACTCCGCTCTCGCGCGAGTCAGTATTGTCAACTTCAACGGC
GAACAAATATACGACTCTTACGTGAGACCCAAGGAAATGGTTACAGACTG
GCGGACGCATGTCAGCGGCATCCTTCCGAAGCATATGGTGGAGGCACGAA
CACTCGAGCAGGTGCAGAAAGACGTTATCAATATCCTCGATGGGCGAATA
CTCGTGGGACATGCGGTCAGCAACGACTTGGACGCTCTTCTTCTCAGCCA
CCCTAAGCGCGACATCAGAGACACCAGCAAACATCCCCCGTACAGAAAGA
TTGCTGGCGGCGGCTCCCCTAGGCTGAAGATGTTGGCTTCGGAGTTTCTT
GGGCTAGAAATCCAGGATGGCGCTCATTCTAGTGTGGAGGATGCTAGGGC
TACAATGCTTCTGTACCGGCGGGACAAGGACACATTCGAGCGGGAACATC
TCAAGAAGTGGCCTGTGCGAGTAGTTGTCGAAAAGAAAGACCAAGACGAT
GATCAAAAGAAAAAGAAGAAGAAGAAGAAGAAGACCCGTAAGAGGTGA
back to top

Coding sequence (CDS) from alignment at OGUI01000007.1:2799608..2800605-

>ATCC64974_51620-T1 ID=ATCC64974_51620-T1|Name=ATCC64974_51620-T1|organism=Aspergillus niger N402|type=CDS|length=1860bp|location=Sequence derived from alignment at OGUI01000007.1:2799608..2800605- (Aspergillus niger N402)
CGCGGAGCTAGGAAAATATGTTGCGATGGATTGCGAAATGGTGGGCGTTG
GCCCCAATCCAGATCACGACTCCGCTCTCGCGCGAGTCAGTATTGTCAAC
TTCAACGGCGAACAAATATACGACTCTTACGTGAGACCCAAGGAAATGGT
TACAGACTGGCGGACGCATGTCAGCGGCATCCTTCCGAAGCATATGGTGG
AGGCACGAACACTCGAGCAGGTGCAGAAAGACGTTATCAATATCCTCGAT
GGGCGAATACTCGTGGGACATGCGGTCAGCAACGACTTGGACGCTCTTCT
TCTCAGCCACCCTAAGCGCGACATCAGAGACACCAGCAAACATCCCCCGT
ACAGAAAGATTGCTGGCGGCGGCTCCCCTAGGCTGAAGATGTTGGCTTCG
GAGTTTCTTGGGCTAGAAATCCAGGATGGCGCTCATTCTAGTGTGGAGGA
TGCTAGGGCTACAATGCTTCTGTACCGGCGGGACAAGGACACATTCGAGC
GGGAACATCTCAAGAAGTGGCCTGTGCGAGTAGTTGTCGAAAAGAAAGAC
CAAGACGATGATCAAAAGAAAAAGAAGAAGAAGAAGAAGAAGACCCGTAA
GAGGTGAATGGACTTGAAAAACCTCTCCAGCAATTGGAAGAAACTCCAGG
GGACGCTGAAAAAGGAAAGCGTCTCCGCCACGAAACGGAAACCTTCAGAC
CGCGAGACGGAGAATGGTGTGGTAAAGAAACGGAAAAGAGAAACTGTCGA
CGGACAACAAAAACCTGAGCGCAAACCGGTCTCAACCAAGAGAAAGAAGA
TGTCTACGAACGGTACTGATGGCGGCGAGAATGGCACCGAGGAGCCTACA
AAGAAGTCGATCTCTCGGAGGAATTCTACGGCCGCTGTTGCGGAATCAAA
GCCGAAGATTAATGAAGGCCGTTCACCTACCGCGGAGCTAGGAAAATATG
TTGCGATGGATTGCGAAATGGTGGGCGTTGGCCCCAATCCAGATCACGAC
TCCGCTCTCGCGCGAGTCAGTATTGTCAACTTCAACGGCGAACAAATATA
CGACTCTTACGTGAGACCCAAGGAAATGGTTACAGACTGGCGGACGCATG
TCAGCGGCATCCTTCCGAAGCATATGGTGGAGGCACGAACACTCGAGCAG
GTGCAGAAAGACGTTATCAATATCCTCGATGGGCGAATACTCGTGGGACA
TGCGGTCAGCAACGACTTGGACGCTCTTCTTCTCAGCCACCCTAAGCGCG
ACATCAGAGACACCAGCAAACATCCCCCGTACAGAAAGATTGCTGGCGGC
GGCTCCCCTAGGCTGAAGATGTTGGCTTCGGAGTTTCTTGGGCTAGAAAT
CCAGGATGGCGCTCATTCTAGTGTGGAGGATGCTAGGGCTACAATGCTTC
TGTACCGGCGGGACAAGGACACATTCGAGCGGGAACATCTCAAGAAGTGG
CCTGTGCGAGTAGTTGTCGAAAAGAAAGACCAAGACGATGATCAAAAGAA
AAAGAAGAAGAAGAAGAAGAAGACCCGTAAGAGGTGAATGGACTTGAAAA
ACCTCTCCAGCAATTGGAAGAAACTCCAGGGGACGCTGAAAAAGGAAAGC
GTCTCCGCCACGAAACGGAAACCTTCAGACCGCGAGACGGAGAATGGTGT
GGTAAAGAAACGGAAAAGAGAAACTGTCGACGGACAACAAAAACCTGAGC
GCAAACCGGTCTCAACCAAGAGAAAGAAGATGTCTACGAACGGTACTGAT
GGCGGCGAGAATGGCACCGAGGAGCCTACAAAGAAGTCGATCTCTCGGAG
GAATTCTACGGCCGCTGTTGCGGAATCAAAGCCGAAGATTAATGAAGGCC
GTTCACCTAC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:00084083'-5' exonuclease activity
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
REX4ATCC64974_51620Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_51620-T1ATCC64974_51620-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_51620-T1.cdsATCC64974_51620-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_51620-T1.exon2ATCC64974_51620-T1.exon2Aspergillus niger N402exon
ATCC64974_51620-T1.exon1ATCC64974_51620-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG092646PE
DBxrefInterPro:IPR012337
DBxrefInterPro:IPR037431
DBxrefInterPro:IPR036397
DBxrefInterPro:IPR013520
DBxrefPFAM:PF00929
Product3'-5' exonuclease
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000007.1supercontigOGUI01000007.1:2799608..2800605 -
Powered by Drupal