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ATCC64974_5240-T1, ATCC64974_5240-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_5240-T1
Unique NameATCC64974_5240-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000001.1:1592857..1593636+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_5240-T1 ID=ATCC64974_5240-T1|Name=ATCC64974_5240-T1|organism=Aspergillus niger N402|type=mRNA|length=780bp|location=Sequence derived from alignment at OGUI01000001.1:1592857..1593636+ (Aspergillus niger N402)
ATGTCGACCGATCCCAAGATCCAGTAATTACCCCTCTTTTCCTACCCTCC
TTTACATCCCGATGAGTCATTAGCTCTTGTCATGGTGTAATCCGCTCCTC
AACCTGCCGGACCTCATTGCTAACCTTGTCTTGCAATTCATTAGGGACCT
GCTCAACAAGCCTAAGAGCGAGCTCACGTACGTTATCGAACCCCTCCTCT
TCTTTCCGGCTTTTATCAAAGCTTTCTATTCCCGTGTTCCTATCACATGA
TGCCCGATCCCCTTTGCACACCTATCAGTCCAACTACCCATGCCCACCAC
AACCCATGATATCCGGATAGTGTCCCGCGCGCCTAATTCTCATCGCGCCA
CATCATATCTATCTATCTACCAACCCATCATCGCCGTCCATTCGCTAACC
TGGCGCCTCATTCAGTGAATACGAGGTCTCCCTCGTCGAGGAACATGAGC
TCACTGCCGGTCCTTTGTCCCTTCTCCAAACCGCTACGCGCACACACACC
CAGGTCCTGATCTCATGCCGGAACAACCGCAAGCTCCTCGCCCGTGTCAA
GGCCTTCGACCGCCACTGCAACATGGTTCTGGAGAACGTCAAGGAGATGT
GGACCGAGAAGCCCAAGGGTGGTAACGGCAAGGGTGTTAACAAGGATCGC
TTCATCAGCAAGATGTAAGCATCGCCATTACCTACACTCACCCTCTCCCC
CCGCCAGAAACAATCCTAACCCAACCTTTTATCGTAGGTTCCTCCGTGGT
GACTCCGTCATCCTCGTCCTGCTCAGCTGA
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Coding sequence (CDS) from alignment at OGUI01000001.1:1592857..1593636+

>ATCC64974_5240-T1 ID=ATCC64974_5240-T1|Name=ATCC64974_5240-T1|organism=Aspergillus niger N402|type=CDS|length=1392bp|location=Sequence derived from alignment at OGUI01000001.1:1592857..1593636+ (Aspergillus niger N402)
ATGTCGACCGATCCCAAGATCCAGGACCTGCTCAACAAGCCTAAGAGCGA
GCTCACTGAATACGAGGTCTCCCTCGTCGAGGAACATGAGCTCACTGCCG
GTCCTTTGTCCCTTCTCCAAACCGCTACGCGCACACACACCCAGGTCCTG
ATCTCATGCCGGAACAACCGCAAGCTCCTCGCCCGTGTCAAGGCCTTCGA
CCGCCACTGCAACATGGTTCTGGAGAACGTCAAGGAGATGTGGACCGAGA
AGCCCAAGGGTGGTAACGGCAAGGGTGTTAACAAGGATCGCTTCATCAGC
AAGATGTTCCTCCGTGGTGACTCCGTCATCCTCGTCCTGCTCAGCTGAAT
GTCGACCGATCCCAAGATCCAGGACCTGCTCAACAAGCCTAAGAGCGAGC
TCACTGAATACGAGGTCTCCCTCGTCGAGGAACATGAGCTCACTGCCGGT
CCTTTGTCCCTTCTCCAAACCGCTACGCGCACACACACCCAGGTCCTGAT
CTCATGCCGGAACAACCGCAAGCTCCTCGCCCGTGTCAAGGCCTTCGACC
GCCACTGCAACATGGTTCTGGAGAACGTCAAGGAGATGTGGACCGAGAAG
CCCAAGGGTGGTAACGGCAAGGGTGTTAACAAGGATCGCTTCATCAGCAA
GATGTTCCTCCGTGGTGACTCCGTCATCCTCGTCCTGCTCAGCTGAATGT
CGACCGATCCCAAGATCCAGGACCTGCTCAACAAGCCTAAGAGCGAGCTC
ACTGAATACGAGGTCTCCCTCGTCGAGGAACATGAGCTCACTGCCGGTCC
TTTGTCCCTTCTCCAAACCGCTACGCGCACACACACCCAGGTCCTGATCT
CATGCCGGAACAACCGCAAGCTCCTCGCCCGTGTCAAGGCCTTCGACCGC
CACTGCAACATGGTTCTGGAGAACGTCAAGGAGATGTGGACCGAGAAGCC
CAAGGGTGGTAACGGCAAGGGTGTTAACAAGGATCGCTTCATCAGCAAGA
TGTTCCTCCGTGGTGACTCCGTCATCCTCGTCCTGCTCAGCTGAATGTCG
ACCGATCCCAAGATCCAGGACCTGCTCAACAAGCCTAAGAGCGAGCTCAC
TGAATACGAGGTCTCCCTCGTCGAGGAACATGAGCTCACTGCCGGTCCTT
TGTCCCTTCTCCAAACCGCTACGCGCACACACACCCAGGTCCTGATCTCA
TGCCGGAACAACCGCAAGCTCCTCGCCCGTGTCAAGGCCTTCGACCGCCA
CTGCAACATGGTTCTGGAGAACGTCAAGGAGATGTGGACCGAGAAGCCCA
AGGGTGGTAACGGCAAGGGTGTTAACAAGGATCGCTTCATCAGCAAGATG
TTCCTCCGTGGTGACTCCGTCATCCTCGTCCTGCTCAGCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0030532small nuclear ribonucleoprotein complex
Vocabulary: Biological Process
TermDefinition
GO:0008380RNA splicing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SMD2ATCC64974_5240Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_5240-T1.exon1ATCC64974_5240-T1.exon1Aspergillus niger N402exon
ATCC64974_5240-T1.exon2ATCC64974_5240-T1.exon2Aspergillus niger N402exon
ATCC64974_5240-T1.exon3ATCC64974_5240-T1.exon3Aspergillus niger N402exon
ATCC64974_5240-T1.exon4ATCC64974_5240-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_5240-T1.cdsATCC64974_5240-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_5240-T1ATCC64974_5240-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09265IT6
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR027248
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductmRNA splicing protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000001.1supercontigOGUI01000001.1:1592857..1593636 +
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