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ATCC64974_52870-T1, ATCC64974_52870-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_52870-T1
Unique NameATCC64974_52870-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000007.1:3156575..3157828+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_52870-T1 ID=ATCC64974_52870-T1|Name=ATCC64974_52870-T1|organism=Aspergillus niger N402|type=mRNA|length=1254bp|location=Sequence derived from alignment at OGUI01000007.1:3156575..3157828+ (Aspergillus niger N402)
ATGCGGCCTATTTTGCTCTCCGGCCATGTGCGTTTCGCCTATACCCACCC
CCGAACGCGATGATGGTCGCCCAGGAGCTAGGAACATGATATGAAAATCG
GGAAATAAAAGGGAATAAGGACGGGTCGCTGATTGATTTTTTGCTTAATA
GGAACGGTCTCTGAACCAAATCAAGTTCAACCGCGATGGCGATCTTATCT
TCTCCGTGGCTAAGGATAAAATTGTGTGCGCCTGGTGGTCGGCCAACGGC
GAGCGACTCGGTACCTACAATGGACACCAGGGTGCTATCTGGACGGTCGA
TGTGAGCCCGAACACTCAGATTCTGGCAACCGGTTCGGCAGACAACACCG
TGCGACTATGGAACGTGAAGACCGGCGAGTGCATCAAGGTGTGGGACTTC
CCTACGGCCGTCAAGCGGGTCGAGTTCACCCCCGATGGAAGCAGACTGTT
GGCTGTGACGGAGAAGCGTATGGGTTTCTTGGGTACCATTGCGGTGTTGG
ATATCAACTACGGCGAGAACTTGACGGAGCAGGCTGAGGAGCCTAGCTTG
CGCATCACCTGCACAGAGAGCAAGGCAACGGTTGCGGGCTGGAGTTACAT
GGGCAAGTACATCATTGCTGGTCACGAAGACGGCAGTGTCAGCCAGTACG
ATGGAAAGGTGCGGAGAAATGCTTGTGTTTTGTTATGCATTTGGGGCTAG
ATGCTAACTGGGTGATGACAGACCGGTGAGCAGCTGGAGAACGTCCAGGC
CCACGAGTTCGACCACCAGATCAACGACATCCAGTTCTCCGCCGACCGCA
CCTACTTCATCACTGCCTCCAAGGACAAGTCCGCCAAGGTACATAAGCCT
GCTACTATGCATGTCAAACGATTTTAAATGCTAACTCAACCCAGCTCATG
TCTACCCGTAACCTCGCCATCCTCAAAACCTATGTTGCCGACACTCCCCT
GAACAGCGCCACCATTACGCCCAAGAAGGACTACGTGATCCTGGGAGGTG
GTCAGGCCGCCATGGATGTCACCACGACCTCGGCCCGCCAGGGTAAGTTC
GAGGCTCGTTTCTACCACAAGGTCTTCGAGGACGAGATCGGTCGTGTCCG
TGGTCATTTCGGTCCCCTCAACACGGTTCACATCCACCCCGCCGGTACTG
CCTACGCCTCTGGAGGTGAGGACGGTTACGTCCGTGTGCACCACTTCGAC
AAGCCCTACTTCGACTTCATGTACGAGGTCGAGCGCGAGCAGCTGAGGAA
GTGA
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Coding sequence (CDS) from alignment at OGUI01000007.1:3156575..3157828+

>ATCC64974_52870-T1 ID=ATCC64974_52870-T1|Name=ATCC64974_52870-T1|organism=Aspergillus niger N402|type=CDS|length=4044bp|location=Sequence derived from alignment at OGUI01000007.1:3156575..3157828+ (Aspergillus niger N402)
ATGCGGCCTATTTTGCTCTCCGGCCATGAACGGTCTCTGAACCAAATCAA
GTTCAACCGCGATGGCGATCTTATCTTCTCCGTGGCTAAGGATAAAATTG
TGTGCGCCTGGTGGTCGGCCAACGGCGAGCGACTCGGTACCTACAATGGA
CACCAGGGTGCTATCTGGACGGTCGATGTGAGCCCGAACACTCAGATTCT
GGCAACCGGTTCGGCAGACAACACCGTGCGACTATGGAACGTGAAGACCG
GCGAGTGCATCAAGGTGTGGGACTTCCCTACGGCCGTCAAGCGGGTCGAG
TTCACCCCCGATGGAAGCAGACTGTTGGCTGTGACGGAGAAGCGTATGGG
TTTCTTGGGTACCATTGCGGTGTTGGATATCAACTACGGCGAGAACTTGA
CGGAGCAGGCTGAGGAGCCTAGCTTGCGCATCACCTGCACAGAGAGCAAG
GCAACGGTTGCGGGCTGGAGTTACATGGGCAAGTACATCATTGCTGGTCA
CGAAGACGGCAGTGTCAGCCAGTACGATGGAAAGACCGGTGAGCAGCTGG
AGAACGTCCAGGCCCACGAGTTCGACCACCAGATCAACGACATCCAGTTC
TCCGCCGACCGCACCTACTTCATCACTGCCTCCAAGGACAAGTCCGCCAA
GCTCATGTCTACCCGTAACCTCGCCATCCTCAAAACCTATGTTGCCGACA
CTCCCCTGAACAGCGCCACCATTACGCCCAAGAAGGACTACGTGATCCTG
GGAGGTGGTCAGGCCGCCATGGATGTCACCACGACCTCGGCCCGCCAGGG
TAAGTTCGAGGCTCGTTTCTACCACAAGGTCTTCGAGGACGAGATCGGTC
GTGTCCGTGGTCATTTCGGTCCCCTCAACACGGTTCACATCCACCCCGCC
GGTACTGCCTACGCCTCTGGAGGTGAGGACGGTTACGTCCGTGTGCACCA
CTTCGACAAGCCCTACTTCGACTTCATGTACGAGGTCGAGCGCGAGCAGC
TGAGGAAGTGAATGCGGCCTATTTTGCTCTCCGGCCATGAACGGTCTCTG
AACCAAATCAAGTTCAACCGCGATGGCGATCTTATCTTCTCCGTGGCTAA
GGATAAAATTGTGTGCGCCTGGTGGTCGGCCAACGGCGAGCGACTCGGTA
CCTACAATGGACACCAGGGTGCTATCTGGACGGTCGATGTGAGCCCGAAC
ACTCAGATTCTGGCAACCGGTTCGGCAGACAACACCGTGCGACTATGGAA
CGTGAAGACCGGCGAGTGCATCAAGGTGTGGGACTTCCCTACGGCCGTCA
AGCGGGTCGAGTTCACCCCCGATGGAAGCAGACTGTTGGCTGTGACGGAG
AAGCGTATGGGTTTCTTGGGTACCATTGCGGTGTTGGATATCAACTACGG
CGAGAACTTGACGGAGCAGGCTGAGGAGCCTAGCTTGCGCATCACCTGCA
CAGAGAGCAAGGCAACGGTTGCGGGCTGGAGTTACATGGGCAAGTACATC
ATTGCTGGTCACGAAGACGGCAGTGTCAGCCAGTACGATGGAAAGACCGG
TGAGCAGCTGGAGAACGTCCAGGCCCACGAGTTCGACCACCAGATCAACG
ACATCCAGTTCTCCGCCGACCGCACCTACTTCATCACTGCCTCCAAGGAC
AAGTCCGCCAAGCTCATGTCTACCCGTAACCTCGCCATCCTCAAAACCTA
TGTTGCCGACACTCCCCTGAACAGCGCCACCATTACGCCCAAGAAGGACT
ACGTGATCCTGGGAGGTGGTCAGGCCGCCATGGATGTCACCACGACCTCG
GCCCGCCAGGGTAAGTTCGAGGCTCGTTTCTACCACAAGGTCTTCGAGGA
CGAGATCGGTCGTGTCCGTGGTCATTTCGGTCCCCTCAACACGGTTCACA
TCCACCCCGCCGGTACTGCCTACGCCTCTGGAGGTGAGGACGGTTACGTC
CGTGTGCACCACTTCGACAAGCCCTACTTCGACTTCATGTACGAGGTCGA
GCGCGAGCAGCTGAGGAAGTGAATGCGGCCTATTTTGCTCTCCGGCCATG
AACGGTCTCTGAACCAAATCAAGTTCAACCGCGATGGCGATCTTATCTTC
TCCGTGGCTAAGGATAAAATTGTGTGCGCCTGGTGGTCGGCCAACGGCGA
GCGACTCGGTACCTACAATGGACACCAGGGTGCTATCTGGACGGTCGATG
TGAGCCCGAACACTCAGATTCTGGCAACCGGTTCGGCAGACAACACCGTG
CGACTATGGAACGTGAAGACCGGCGAGTGCATCAAGGTGTGGGACTTCCC
TACGGCCGTCAAGCGGGTCGAGTTCACCCCCGATGGAAGCAGACTGTTGG
CTGTGACGGAGAAGCGTATGGGTTTCTTGGGTACCATTGCGGTGTTGGAT
ATCAACTACGGCGAGAACTTGACGGAGCAGGCTGAGGAGCCTAGCTTGCG
CATCACCTGCACAGAGAGCAAGGCAACGGTTGCGGGCTGGAGTTACATGG
GCAAGTACATCATTGCTGGTCACGAAGACGGCAGTGTCAGCCAGTACGAT
GGAAAGACCGGTGAGCAGCTGGAGAACGTCCAGGCCCACGAGTTCGACCA
CCAGATCAACGACATCCAGTTCTCCGCCGACCGCACCTACTTCATCACTG
CCTCCAAGGACAAGTCCGCCAAGCTCATGTCTACCCGTAACCTCGCCATC
CTCAAAACCTATGTTGCCGACACTCCCCTGAACAGCGCCACCATTACGCC
CAAGAAGGACTACGTGATCCTGGGAGGTGGTCAGGCCGCCATGGATGTCA
CCACGACCTCGGCCCGCCAGGGTAAGTTCGAGGCTCGTTTCTACCACAAG
GTCTTCGAGGACGAGATCGGTCGTGTCCGTGGTCATTTCGGTCCCCTCAA
CACGGTTCACATCCACCCCGCCGGTACTGCCTACGCCTCTGGAGGTGAGG
ACGGTTACGTCCGTGTGCACCACTTCGACAAGCCCTACTTCGACTTCATG
TACGAGGTCGAGCGCGAGCAGCTGAGGAAGTGAATGCGGCCTATTTTGCT
CTCCGGCCATGAACGGTCTCTGAACCAAATCAAGTTCAACCGCGATGGCG
ATCTTATCTTCTCCGTGGCTAAGGATAAAATTGTGTGCGCCTGGTGGTCG
GCCAACGGCGAGCGACTCGGTACCTACAATGGACACCAGGGTGCTATCTG
GACGGTCGATGTGAGCCCGAACACTCAGATTCTGGCAACCGGTTCGGCAG
ACAACACCGTGCGACTATGGAACGTGAAGACCGGCGAGTGCATCAAGGTG
TGGGACTTCCCTACGGCCGTCAAGCGGGTCGAGTTCACCCCCGATGGAAG
CAGACTGTTGGCTGTGACGGAGAAGCGTATGGGTTTCTTGGGTACCATTG
CGGTGTTGGATATCAACTACGGCGAGAACTTGACGGAGCAGGCTGAGGAG
CCTAGCTTGCGCATCACCTGCACAGAGAGCAAGGCAACGGTTGCGGGCTG
GAGTTACATGGGCAAGTACATCATTGCTGGTCACGAAGACGGCAGTGTCA
GCCAGTACGATGGAAAGACCGGTGAGCAGCTGGAGAACGTCCAGGCCCAC
GAGTTCGACCACCAGATCAACGACATCCAGTTCTCCGCCGACCGCACCTA
CTTCATCACTGCCTCCAAGGACAAGTCCGCCAAGCTCATGTCTACCCGTA
ACCTCGCCATCCTCAAAACCTATGTTGCCGACACTCCCCTGAACAGCGCC
ACCATTACGCCCAAGAAGGACTACGTGATCCTGGGAGGTGGTCAGGCCGC
CATGGATGTCACCACGACCTCGGCCCGCCAGGGTAAGTTCGAGGCTCGTT
TCTACCACAAGGTCTTCGAGGACGAGATCGGTCGTGTCCGTGGTCATTTC
GGTCCCCTCAACACGGTTCACATCCACCCCGCCGGTACTGCCTACGCCTC
TGGAGGTGAGGACGGTTACGTCCGTGTGCACCACTTCGACAAGCCCTACT
TCGACTTCATGTACGAGGTCGAGCGCGAGCAGCTGAGGAAGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005852eukaryotic translation initiation factor 3 complex
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TIF34ATCC64974_52870Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_52870-T1.exon1ATCC64974_52870-T1.exon1Aspergillus niger N402exon
ATCC64974_52870-T1.exon2ATCC64974_52870-T1.exon2Aspergillus niger N402exon
ATCC64974_52870-T1.exon3ATCC64974_52870-T1.exon3Aspergillus niger N402exon
ATCC64974_52870-T1.exon4ATCC64974_52870-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_52870-T1.cdsATCC64974_52870-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_52870-T1ATCC64974_52870-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262W7C
DBxrefInterPro:IPR036322
DBxrefInterPro:IPR027525
DBxrefInterPro:IPR017986
DBxrefInterPro:IPR019775
DBxrefInterPro:IPR015943
DBxrefInterPro:IPR001680
DBxrefPFAM:PF00400
Producttranslation initiation factor eIF3 subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000007.1supercontigOGUI01000007.1:3156575..3157828 +
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