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ATCC64974_5520-T1, ATCC64974_5520-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_5520-T1
Unique NameATCC64974_5520-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000001.1:1683383..1684554-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_5520-T1 ID=ATCC64974_5520-T1|Name=ATCC64974_5520-T1|organism=Aspergillus niger N402|type=mRNA|length=1172bp|location=Sequence derived from alignment at OGUI01000001.1:1683383..1684554- (Aspergillus niger N402)
ATGCCCGGAAAAGAGTTACCTGATCGCTGCATGAATTGTCATGAGGCTGA
ACCGGCCTTTCTATTGCGCGAGCGTCATGTCTGCCAGTACGTCTCGCCCC
AAAGTACACCTGTTGCCGCTACTAGTCCATACTGATCTCAGTTACCCCTC
CATCCAGAGAATGTTATATTCGATTCTTGAACTTCAAGCCATTCAGGCGC
ATGGAACGGTATCGTCTCCGGAGGAATATGCCACAGACTGGTCCCTGCAA
ATTGCTGCTCCCCCTTTCGTACGGCGTCTCCTCCACTGTGCTATTGCACA
TGCTGCACCGGCAGTTAGAGGCACTACGCTCAAAAAAACATGGTCCCGCG
GGCTTCGAAATCCTCGTCCTCGTCGTTGAGCCTTCGACAATCTCCCCCGT
TCCTCCGCACGAAGAAGGCTTTGCACTCGCGCAGCAGACCTTCCCGCTCT
GTTCCTTCACCCGGCTCCCCTTCCACAGTATCTTCGAGCTTGACCCGGAT
GTCCATCAAATCATGTCGCAGTATGCCGGGGAGCACTTCACAGATGACAC
CTCGCTGTCCGATGAGGAGCGTTTGAATCGCTTCCGCAGGTCGATTACAA
CAGCCACATCCAAGTCCGATGTCGACCAAATTTTGTTGAACAAACTTGTC
GTTGCTTTCGCAAAGAAAATGGAATGCCGCGGCATAGTATGGGGTGACTC
GGATAGCAAGCTCGCTGCAAAGACCCTCGCCAACGTCGCGAAAGGACGCG
GCTCTGCAGTGACGTGGCAGGTGTGCGATGGAATGTCGCCTTTTGGCCTA
GAATTCAACTTCCCGCTTCGGGACGTGTTCACGGCAGAGATACGCACCTA
TGCCACCCTCTTTCCCGAGCTGGCTGGCATCATCGTTCATGACGAGCCTC
CCTCAGAGAATACGCTTACCAAGAATCTGTCGATCGATGAGCTGATGATC
CGTTATGTCAGCACTCAGGGTGAGAAATACCCCGGCGTCATGTTGAACGT
AACTAGGACTGCCAGTAAGCTCCAGTCGTCTGGTACATCTATCGGCGGAC
TGCAGTGCAATTTCTGCGGGGCCTTCATGACTACAAATGAGAATATCACG
GGCGAACAAGGCAACGAACAGCTTCAATTCTGCTATGCCTGTGCTCGGTC
CCAACCCGAATTGAGCTGTTAA
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Coding sequence (CDS) from alignment at OGUI01000001.1:1683383..1684554-

>ATCC64974_5520-T1 ID=ATCC64974_5520-T1|Name=ATCC64974_5520-T1|organism=Aspergillus niger N402|type=CDS|length=2202bp|location=Sequence derived from alignment at OGUI01000001.1:1683383..1684554- (Aspergillus niger N402)
AGAATGTTATATTCGATTCTTGAACTTCAAGCCATTCAGGCGCATGGAAC
GGTATCGTCTCCGGAGGAATATGCCACAGACTGGTCCCTGCAAATTGCTG
CTCCCCCTTTCGTACGGCGTCTCCTCCACTGTGCTATTGCACATGCTGCA
CCGGCAGTTAGAGGCACTACGCTCAAAAAAACATGGTCCCGCGGGCTTCG
AAATCCTCGTCCTCGTCGTTGAGCCTTCGACAATCTCCCCCGTTCCTCCG
CACGAAGAAGGCTTTGCACTCGCGCAGCAGACCTTCCCGCTCTGTTCCTT
CACCCGGCTCCCCTTCCACAGTATCTTCGAGCTTGACCCGGATGTCCATC
AAATCATGTCGCAGTATGCCGGGGAGCACTTCACAGATGACACCTCGCTG
TCCGATGAGGAGCGTTTGAATCGCTTCCGCAGGTCGATTACAACAGCCAC
ATCCAAGTCCGATGTCGACCAAATTTTGTTGAACAAACTTGTCGTTGCTT
TCGCAAAGAAAATGGAATGCCGCGGCATAGTATGGGGTGACTCGGATAGC
AAGCTCGCTGCAAAGACCCTCGCCAACGTCGCGAAAGGACGCGGCTCTGC
AGTGACGTGGCAGGTGTGCGATGGAATGTCGCCTTTTGGCCTAGAATTCA
ACTTCCCGCTTCGGGACGTGTTCACGGCAGAGATACGCACCTATGCCACC
CTCTTTCCCGAGCTGGCTGGCATCATCGTTCATGACGAGCCTCCCTCAGA
GAATACGCTTACCAAGAATCTGTCGATCGATGAGCTGATGATCCGTTATG
TCAGCACTCAGGGTGAGAAATACCCCGGCGTCATGTTGAACGTAACTAGG
ACTGCCAGTAAGCTCCAGTCGTCTGGTACATCTATCGGCGGACTGCAGTG
CAATTTCTGCGGGGCCTTCATGACTACAAATGAGAATATCACGGGCGAAC
AAGGCAACGAACAGCTTCAATTCTGCTATGCCTGTGCTCGGTCCCAACCC
GAATTGAGCTGTTAAATGCCCGGAAAAGAGTTACCTGATCGCTGCATGAA
TTGTCATGAGGCTGAACCGGCCTTTCTATTGCGCGAGCGTCATGTCTGCC
AAGAATGTTATATTCGATTCTTGAACTTCAAGCCATTCAGGCGCATGGAA
CGGTATCGTCTCCGGAGGAATATGCCACAGACTGGTCCCTGCAAATTGCT
GCTCCCCCTTTCGTACGGCGTCTCCTCCACTGTGCTATTGCACATGCTGC
ACCGGCAGTTAGAGGCACTACGCTCAAAAAAACATGGTCCCGCGGGCTTC
GAAATCCTCGTCCTCGTCGTTGAGCCTTCGACAATCTCCCCCGTTCCTCC
GCACGAAGAAGGCTTTGCACTCGCGCAGCAGACCTTCCCGCTCTGTTCCT
TCACCCGGCTCCCCTTCCACAGTATCTTCGAGCTTGACCCGGATGTCCAT
CAAATCATGTCGCAGTATGCCGGGGAGCACTTCACAGATGACACCTCGCT
GTCCGATGAGGAGCGTTTGAATCGCTTCCGCAGGTCGATTACAACAGCCA
CATCCAAGTCCGATGTCGACCAAATTTTGTTGAACAAACTTGTCGTTGCT
TTCGCAAAGAAAATGGAATGCCGCGGCATAGTATGGGGTGACTCGGATAG
CAAGCTCGCTGCAAAGACCCTCGCCAACGTCGCGAAAGGACGCGGCTCTG
CAGTGACGTGGCAGGTGTGCGATGGAATGTCGCCTTTTGGCCTAGAATTC
AACTTCCCGCTTCGGGACGTGTTCACGGCAGAGATACGCACCTATGCCAC
CCTCTTTCCCGAGCTGGCTGGCATCATCGTTCATGACGAGCCTCCCTCAG
AGAATACGCTTACCAAGAATCTGTCGATCGATGAGCTGATGATCCGTTAT
GTCAGCACTCAGGGTGAGAAATACCCCGGCGTCATGTTGAACGTAACTAG
GACTGCCAGTAAGCTCCAGTCGTCTGGTACATCTATCGGCGGACTGCAGT
GCAATTTCTGCGGGGCCTTCATGACTACAAATGAGAATATCACGGGCGAA
CAAGGCAACGAACAGCTTCAATTCTGCTATGCCTGTGCTCGGTCCCAACC
CGAATTGAGCTGTTAAATGCCCGGAAAAGAGTTACCTGATCGCTGCATGA
ATTGTCATGAGGCTGAACCGGCCTTTCTATTGCGCGAGCGTCATGTCTGC
CA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0002098tRNA wobble uridine modification
GO:0034227tRNA thio-modification
Vocabulary: Molecular Function
TermDefinition
GO:0000049tRNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NCS2ATCC64974_5520Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_5520-T1ATCC64974_5520-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_5520-T1.cdsATCC64974_5520-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_5520-T1.exon2ATCC64974_5520-T1.exon2Aspergillus niger N402exon
ATCC64974_5520-T1.exon1ATCC64974_5520-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
DBxrefInterPro:IPR019407
DBxrefInterPro:IPR014729
Productcytoplasmic tRNA 2-thiolation protein 2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000001.1supercontigOGUI01000001.1:1683383..1684554 -
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