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ATCC64974_57070-T1, ATCC64974_57070-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_57070-T1
Unique NameATCC64974_57070-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000007.1:4517874..4518475-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_57070-T1 ID=ATCC64974_57070-T1|Name=ATCC64974_57070-T1|organism=Aspergillus niger N402|type=mRNA|length=602bp|location=Sequence derived from alignment at OGUI01000007.1:4517874..4518475- (Aspergillus niger N402)
ATGCAGATCTTCGTCAAGACCCTTACGGGTAAGACTATCACCCTCGAGGT
GGAGTCCTCGGACACCATTGACAATGTCAAGTCCAAGATCCAGGGTAAGC
ATACACACACACCCCTACAATCACCGGAATTACAATCAAACAACATTTAC
TAATGATTTTGTTCAGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCT
GATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTTTCGGACTACA
ACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGCCTGCGTGGTGGT
GGTAAGAAGCGCAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCA
CAAGCACAAGAAGACCAAGCTTGCCGTCCTCAAGTACTACAAGGTCGACG
GTGATGGCAAGATTGAGCGTCTTCGCCGCGAGTGCCCCTCCCCCGAGGTA
TGTTTAATTCCGCCTTTGGTTGATCCCTGAAGTTGGCGCAGTTTACTGAT
TTCGTCTCTTAGTGCGGTGCTGGTATCTTCATGGCCGCTATGCACAACCG
CCAGTACTGCGGAAAGTGCCACCTCACCTACGTCTTCGACGAGTCCAAAT
AA
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Coding sequence (CDS) from alignment at OGUI01000007.1:4517874..4518475-

>ATCC64974_57070-T1 ID=ATCC64974_57070-T1|Name=ATCC64974_57070-T1|organism=Aspergillus niger N402|type=CDS|length=1395bp|location=Sequence derived from alignment at OGUI01000007.1:4517874..4518475- (Aspergillus niger N402)
TGCGGTGCTGGTATCTTCATGGCCGCTATGCACAACCGCCAGTACTGCGG
AAAGTGCCACCTCACCTACGTCTTCGACGAGTCCAAATAAACAAGGAGGG
TATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGG
ACGGCCGTACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCAC
TTGGTGCTCCGCCTGCGTGGTGGTGGTAAGAAGCGCAAGAAGAAGGTCTA
CACCACCCCCAAGAAGATCAAGCACAAGCACAAGAAGACCAAGCTTGCCG
TCCTCAAGTACTACAAGGTCGACGGTGATGGCAAGATTGAGCGTCTTCGC
CGCGAGTGCCCCTCCCCCGAGATGCAGATCTTCGTCAAGACCCTTACGGG
TAAGACTATCACCCTCGAGGTGGAGTCCTCGGACACCATTGACAATGTCA
AGTCCAAGATCCAGGTGCGGTGCTGGTATCTTCATGGCCGCTATGCACAA
CCGCCAGTACTGCGGAAAGTGCCACCTCACCTACGTCTTCGACGAGTCCA
AATAAACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTG
GTAAGCAGCTCGAGGACGGCCGTACTCTTTCGGACTACAACATCCAGAAG
GAGTCCACCCTCCACTTGGTGCTCCGCCTGCGTGGTGGTGGTAAGAAGCG
CAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCACAAGCACAAGA
AGACCAAGCTTGCCGTCCTCAAGTACTACAAGGTCGACGGTGATGGCAAG
ATTGAGCGTCTTCGCCGCGAGTGCCCCTCCCCCGAGATGCAGATCTTCGT
CAAGACCCTTACGGGTAAGACTATCACCCTCGAGGTGGAGTCCTCGGACA
CCATTGACAATGTCAAGTCCAAGATCCAGGTGCGGTGCTGGTATCTTCAT
GGCCGCTATGCACAACCGCCAGTACTGCGGAAAGTGCCACCTCACCTACG
TCTTCGACGAGTCCAAATAAACAAGGAGGGTATCCCCCCGGACCAGCAGC
GTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTTTCGGAC
TACAACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGCCTGCGTGG
TGGTGGTAAGAAGCGCAAGAAGAAGGTCTACACCACCCCCAAGAAGATCA
AGCACAAGCACAAGAAGACCAAGCTTGCCGTCCTCAAGTACTACAAGGTC
GACGGTGATGGCAAGATTGAGCGTCTTCGCCGCGAGTGCCCCTCCCCCGA
GATGCAGATCTTCGTCAAGACCCTTACGGGTAAGACTATCACCCTCGAGG
TGGAGTCCTCGGACACCATTGACAATGTCAAGTCCAAGATCCAGG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
UBI::CRP6ATCC64974_57070Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_57070-T1ATCC64974_57070-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_57070-T1.cdsATCC64974_57070-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_57070-T1.exon3ATCC64974_57070-T1.exon3Aspergillus niger N402exon
ATCC64974_57070-T1.exon2ATCC64974_57070-T1.exon2Aspergillus niger N402exon
ATCC64974_57070-T1.exon1ATCC64974_57070-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
DBxrefInterPro:IPR029071
DBxrefInterPro:IPR011332
DBxrefInterPro:IPR019954
DBxrefInterPro:IPR038582
DBxrefInterPro:IPR002906
DBxrefInterPro:IPR000626
DBxrefInterPro:IPR019956
DBxrefPFAM:PF14560
DBxrefPFAM:PF00240
DBxrefPFAM:PF01599
DBxrefPFAM:PF11976
ProductUbiquitin-40S ribosomal protein S27a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000007.1supercontigOGUI01000007.1:4517874..4518475 -
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