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ATCC64974_58340-T1, ATCC64974_58340-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_58340-T1
Unique NameATCC64974_58340-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000007.1:4978438..4979559+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_58340-T1 ID=ATCC64974_58340-T1|Name=ATCC64974_58340-T1|organism=Aspergillus niger N402|type=mRNA|length=1122bp|location=Sequence derived from alignment at OGUI01000007.1:4978438..4979559+ (Aspergillus niger N402)
ATGGCTGAGACGACAAATGATACAGCTGCAACTGCAGCTGCAGCTGCGGA
CCCCCAACCGCCGGTTGTCACATTCAAAAAGCGCGGCGCAAAGGCGAGTC
AGAACATCCGCAAAAGACCAGCACCGCCTCCCGTATCGCAAGACGACGAT
TCTTCCGACTTTTCCTCCTCTGAAGACGAATCGGGTCACAGAATAAAGCG
CAGAAAGAACAAGGGTGCTGGGGTTGTCTCTGCTTCATCTGCGACTACCA
AGCCTGTCGATCGGGAACCTGCGGCCACCGCCACCGGGGATGGCAAAGTC
CAGCTTGCGGATACGAACGACGCCACAAAACACGTCGACTGGTTTGACGA
GGATTCTAAGGATGCGCGCTCATCGAAACCGCAATCTGCCTCGAATGAGC
CGCAGATGCCGGATGGCACATATAGGGGACTGGCGAACCAGACGTCATTC
ATCAAGAAGAATCCGAATGCGCCGAACAGGTCATTCGGACCGATCAAGGC
AGCGACCAATATCCGTACTATAACAGTGACGGACTACTCTCCAGATGTGT
GCAAGGACTACAAGCAGACTGGATTCTGTGGTTTCGGTGATAATTGGTGA
GTGCCGTCGCCCCTTTCACCCGACATACACATTTGCCACTCAATAGGGAG
CAGCTTATCTAATTGAAGCATACGCTAACTATTATTGTACAGTAAATTCC
TTCACGATCGAAGCGACTACAAACAAGGATGGGAACTGGATCGAGAGTGG
GAGACCGTCACCAAGGGCAAACAATTGAAGGGAACAGTGGTTGCGAGTGC
CGATCGGACAACGACGGAGAATAAAGACGACGATGAAGAGGCCATGCTGG
AAGACATCCCGTTTGCCTGTTTTATCTGCAAGGGGCCATACAGGGAGCCG
ATCGTCACGAAATGCGGTCACTACTTCTGCGAGCAGTGTGCTCTGCAAAG
ATACAGGAAGGACCCAAGCTGCGCAGCCTGTGGATCCGCCACGAATGGAT
TATTCAGTTCGGCCAAGAGATTGAAAAAGCTGCTAGAGCGCAAGAGGGAA
CTTGCGGCGAAGAGGAGACAAGAGGCTATCGAAGCTGGTGAGGAAGTGAG
TGACGAGGAAGACGAAGAATGA
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Coding sequence (CDS) from alignment at OGUI01000007.1:4978438..4979559+

>ATCC64974_58340-T1 ID=ATCC64974_58340-T1|Name=ATCC64974_58340-T1|organism=Aspergillus niger N402|type=CDS|length=2052bp|location=Sequence derived from alignment at OGUI01000007.1:4978438..4979559+ (Aspergillus niger N402)
ATGGCTGAGACGACAAATGATACAGCTGCAACTGCAGCTGCAGCTGCGGA
CCCCCAACCGCCGGTTGTCACATTCAAAAAGCGCGGCGCAAAGGCGAGTC
AGAACATCCGCAAAAGACCAGCACCGCCTCCCGTATCGCAAGACGACGAT
TCTTCCGACTTTTCCTCCTCTGAAGACGAATCGGGTCACAGAATAAAGCG
CAGAAAGAACAAGGGTGCTGGGGTTGTCTCTGCTTCATCTGCGACTACCA
AGCCTGTCGATCGGGAACCTGCGGCCACCGCCACCGGGGATGGCAAAGTC
CAGCTTGCGGATACGAACGACGCCACAAAACACGTCGACTGGTTTGACGA
GGATTCTAAGGATGCGCGCTCATCGAAACCGCAATCTGCCTCGAATGAGC
CGCAGATGCCGGATGGCACATATAGGGGACTGGCGAACCAGACGTCATTC
ATCAAGAAGAATCCGAATGCGCCGAACAGGTCATTCGGACCGATCAAGGC
AGCGACCAATATCCGTACTATAACAGTGACGGACTACTCTCCAGATGTGT
GCAAGGACTACAAGCAGACTGGATTCTGTGGTTTCGGTGATAATTGTAAA
TTCCTTCACGATCGAAGCGACTACAAACAAGGATGGGAACTGGATCGAGA
GTGGGAGACCGTCACCAAGGGCAAACAATTGAAGGGAACAGTGGTTGCGA
GTGCCGATCGGACAACGACGGAGAATAAAGACGACGATGAAGAGGCCATG
CTGGAAGACATCCCGTTTGCCTGTTTTATCTGCAAGGGGCCATACAGGGA
GCCGATCGTCACGAAATGCGGTCACTACTTCTGCGAGCAGTGTGCTCTGC
AAAGATACAGGAAGGACCCAAGCTGCGCAGCCTGTGGATCCGCCACGAAT
GGATTATTCAGTTCGGCCAAGAGATTGAAAAAGCTGCTAGAGCGCAAGAG
GGAACTTGCGGCGAAGAGGAGACAAGAGGCTATCGAAGCTGGTGAGGAAG
TGAGTGACGAGGAAGACGAAGAATGAATGGCTGAGACGACAAATGATACA
GCTGCAACTGCAGCTGCAGCTGCGGACCCCCAACCGCCGGTTGTCACATT
CAAAAAGCGCGGCGCAAAGGCGAGTCAGAACATCCGCAAAAGACCAGCAC
CGCCTCCCGTATCGCAAGACGACGATTCTTCCGACTTTTCCTCCTCTGAA
GACGAATCGGGTCACAGAATAAAGCGCAGAAAGAACAAGGGTGCTGGGGT
TGTCTCTGCTTCATCTGCGACTACCAAGCCTGTCGATCGGGAACCTGCGG
CCACCGCCACCGGGGATGGCAAAGTCCAGCTTGCGGATACGAACGACGCC
ACAAAACACGTCGACTGGTTTGACGAGGATTCTAAGGATGCGCGCTCATC
GAAACCGCAATCTGCCTCGAATGAGCCGCAGATGCCGGATGGCACATATA
GGGGACTGGCGAACCAGACGTCATTCATCAAGAAGAATCCGAATGCGCCG
AACAGGTCATTCGGACCGATCAAGGCAGCGACCAATATCCGTACTATAAC
AGTGACGGACTACTCTCCAGATGTGTGCAAGGACTACAAGCAGACTGGAT
TCTGTGGTTTCGGTGATAATTGTAAATTCCTTCACGATCGAAGCGACTAC
AAACAAGGATGGGAACTGGATCGAGAGTGGGAGACCGTCACCAAGGGCAA
ACAATTGAAGGGAACAGTGGTTGCGAGTGCCGATCGGACAACGACGGAGA
ATAAAGACGACGATGAAGAGGCCATGCTGGAAGACATCCCGTTTGCCTGT
TTTATCTGCAAGGGGCCATACAGGGAGCCGATCGTCACGAAATGCGGTCA
CTACTTCTGCGAGCAGTGTGCTCTGCAAAGATACAGGAAGGACCCAAGCT
GCGCAGCCTGTGGATCCGCCACGAATGGATTATTCAGTTCGGCCAAGAGA
TTGAAAAAGCTGCTAGAGCGCAAGAGGGAACTTGCGGCGAAGAGGAGACA
AGAGGCTATCGAAGCTGGTGAGGAAGTGAGTGACGAGGAAGACGAAGAAT
GA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CWC24ATCC64974_58340Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_58340-T1.exon1ATCC64974_58340-T1.exon1Aspergillus niger N402exon
ATCC64974_58340-T1.exon2ATCC64974_58340-T1.exon2Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_58340-T1.cdsATCC64974_58340-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_58340-T1ATCC64974_58340-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036855
DBxrefInterPro:IPR017907
DBxrefInterPro:IPR013083
DBxrefInterPro:IPR000571
DBxrefInterPro:IPR001841
DBxrefPFAM:PF13445
DBxrefPFAM:PF00642
DBxrefPFAM:PF13920
DBxrefPFAM:PF13923
DBxrefPFAM:PF00097
ProductRNA-splicing factor
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000007.1supercontigOGUI01000007.1:4978438..4979559 +
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