You are here

Home

ATCC64974_58540-T1, ATCC64974_58540-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_58540-T1
Unique NameATCC64974_58540-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000007.1:5042412..5043645-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_58540-T1 ID=ATCC64974_58540-T1|Name=ATCC64974_58540-T1|organism=Aspergillus niger N402|type=mRNA|length=1234bp|location=Sequence derived from alignment at OGUI01000007.1:5042412..5043645- (Aspergillus niger N402)
ATGCATTTCCTCCAGAACGCCGTTGTGGCCGCCACTATGGGCGCTGCGCT
GGCCGCCGCTGCTCCTCTCGAGAAGCGCTCCTGCACTTTCACCTCCGCCT
CTGCTGCCAAGTCCGGCAAGTCCTCTTGCTCCACCATCACCCTCGACAAC
ATCGCGGTCCCCGCTGGTGAGACTCTTGACTTGACTGGCCTCAAGAAGGG
TACCACCGTACGTCTTCTCTAGCTCCCATAGTACTCTTCCTACTCCGATT
GGACCAACTAACTCTCTTCCCTCACAGGTCATCTTCGAGGGTGAGACCAC
CTTCGGCTACAAGGAATGGAAGGGTCCCCTGATCTCCATGTCCGGTACCG
ACATCACCGTCAAGCAGGCCTCCGGTGCCAAGATCAACTGCGACGGTGCT
CGCTGGTGGGACGGCAAGGGTAGCAACGGTGGCAAGACCAAGCCCAAGTT
CTTCCAGGCCCACAAGCTCGACCAGTCCAGCATCACCGGCCTGAAGGTCT
ACAACACCCCTGTCCAGGGTTTCAGCATTCTGGCCGACCACCTGACCATC
ACCGATGTGACCATCGACAACTCCGCCGGTACCAGCAAGGGTCACAACAC
CGATGCCTTTGACATTGGCCAGAGTACCTACATCACCATTGACGGTGCCA
CCGTCTACAACCAGGATGACTGCCTGGCCATCAACTCGGGTGAGGTATGT
ATATGTCTTGCCCCATCGCGCTGCCACTGTCCCGTAGCCACACGTGATTA
GAGACTGACTAGAACACAGCACATCACCTTCACCAACGGCTACTGTGATG
GTGGCCACGGTCTCTCCATCGGTTCCATCGGTGGCCGCAGTGACAACACC
GTCAACGACGTGACCATCTCCAACTCCAAGGTGCTCAACTCCCAGAACGG
TGTCCGCATCAAGACCATCTACGGCAAGACTGGCACTGTCGAGAACGTCA
AGTTTGAGGACATCACCCTGTCCGACATCAGCAAGTACGGTATTGTCGTT
GAGCAGGACTACGAGAACGGCAGCCCCACCGGCACGCCCACCAACGGTGT
CAAGGTTGAGGACATCACTTTCAAGAAGGTCACCGGCAGCGTCAAGAGCT
CTGGTACTGACATCTACATCCTGTGCGGTTCCGGCAGCTGCTCGAACTGG
ACCTGGAGCGGTGTTGATGTGACTGGCGGCAAGAAGAGCAGCAAGTGCAA
GAACGTCCCCTCGGGCGCTTCCTGCAGCGATTAA
back to top

Coding sequence (CDS) from alignment at OGUI01000007.1:5042412..5043645-

>ATCC64974_58540-T1 ID=ATCC64974_58540-T1|Name=ATCC64974_58540-T1|organism=Aspergillus niger N402|type=CDS|length=3267bp|location=Sequence derived from alignment at OGUI01000007.1:5042412..5043645- (Aspergillus niger N402)
CACATCACCTTCACCAACGGCTACTGTGATGGTGGCCACGGTCTCTCCAT
CGGTTCCATCGGTGGCCGCAGTGACAACACCGTCAACGACGTGACCATCT
CCAACTCCAAGGTGCTCAACTCCCAGAACGGTGTCCGCATCAAGACCATC
TACGGCAAGACTGGCACTGTCGAGAACGTCAAGTTTGAGGACATCACCCT
GTCCGACATCAGCAAGTACGGTATTGTCGTTGAGCAGGACTACGAGAACG
GCAGCCCCACCGGCACGCCCACCAACGGTGTCAAGGTTGAGGACATCACT
TTCAAGAAGGTCACCGGCAGCGTCAAGAGCTCTGGTACTGACATCTACAT
CCTGTGCGGTTCCGGCAGCTGCTCGAACTGGACCTGGAGCGGTGTTGATG
TGACTGGCGGCAAGAAGAGCAGCAAGTGCAAGAACGTCCCCTCGGGCGCT
TCCTGCAGCGATTAAGTCATCTTCGAGGGTGAGACCACCTTCGGCTACAA
GGAATGGAAGGGTCCCCTGATCTCCATGTCCGGTACCGACATCACCGTCA
AGCAGGCCTCCGGTGCCAAGATCAACTGCGACGGTGCTCGCTGGTGGGAC
GGCAAGGGTAGCAACGGTGGCAAGACCAAGCCCAAGTTCTTCCAGGCCCA
CAAGCTCGACCAGTCCAGCATCACCGGCCTGAAGGTCTACAACACCCCTG
TCCAGGGTTTCAGCATTCTGGCCGACCACCTGACCATCACCGATGTGACC
ATCGACAACTCCGCCGGTACCAGCAAGGGTCACAACACCGATGCCTTTGA
CATTGGCCAGAGTACCTACATCACCATTGACGGTGCCACCGTCTACAACC
AGGATGACTGCCTGGCCATCAACTCGGGTGAGATGCATTTCCTCCAGAAC
GCCGTTGTGGCCGCCACTATGGGCGCTGCGCTGGCCGCCGCTGCTCCTCT
CGAGAAGCGCTCCTGCACTTTCACCTCCGCCTCTGCTGCCAAGTCCGGCA
AGTCCTCTTGCTCCACCATCACCCTCGACAACATCGCGGTCCCCGCTGGT
GAGACTCTTGACTTGACTGGCCTCAAGAAGGGTACCACCCACATCACCTT
CACCAACGGCTACTGTGATGGTGGCCACGGTCTCTCCATCGGTTCCATCG
GTGGCCGCAGTGACAACACCGTCAACGACGTGACCATCTCCAACTCCAAG
GTGCTCAACTCCCAGAACGGTGTCCGCATCAAGACCATCTACGGCAAGAC
TGGCACTGTCGAGAACGTCAAGTTTGAGGACATCACCCTGTCCGACATCA
GCAAGTACGGTATTGTCGTTGAGCAGGACTACGAGAACGGCAGCCCCACC
GGCACGCCCACCAACGGTGTCAAGGTTGAGGACATCACTTTCAAGAAGGT
CACCGGCAGCGTCAAGAGCTCTGGTACTGACATCTACATCCTGTGCGGTT
CCGGCAGCTGCTCGAACTGGACCTGGAGCGGTGTTGATGTGACTGGCGGC
AAGAAGAGCAGCAAGTGCAAGAACGTCCCCTCGGGCGCTTCCTGCAGCGA
TTAAGTCATCTTCGAGGGTGAGACCACCTTCGGCTACAAGGAATGGAAGG
GTCCCCTGATCTCCATGTCCGGTACCGACATCACCGTCAAGCAGGCCTCC
GGTGCCAAGATCAACTGCGACGGTGCTCGCTGGTGGGACGGCAAGGGTAG
CAACGGTGGCAAGACCAAGCCCAAGTTCTTCCAGGCCCACAAGCTCGACC
AGTCCAGCATCACCGGCCTGAAGGTCTACAACACCCCTGTCCAGGGTTTC
AGCATTCTGGCCGACCACCTGACCATCACCGATGTGACCATCGACAACTC
CGCCGGTACCAGCAAGGGTCACAACACCGATGCCTTTGACATTGGCCAGA
GTACCTACATCACCATTGACGGTGCCACCGTCTACAACCAGGATGACTGC
CTGGCCATCAACTCGGGTGAGATGCATTTCCTCCAGAACGCCGTTGTGGC
CGCCACTATGGGCGCTGCGCTGGCCGCCGCTGCTCCTCTCGAGAAGCGCT
CCTGCACTTTCACCTCCGCCTCTGCTGCCAAGTCCGGCAAGTCCTCTTGC
TCCACCATCACCCTCGACAACATCGCGGTCCCCGCTGGTGAGACTCTTGA
CTTGACTGGCCTCAAGAAGGGTACCACCCACATCACCTTCACCAACGGCT
ACTGTGATGGTGGCCACGGTCTCTCCATCGGTTCCATCGGTGGCCGCAGT
GACAACACCGTCAACGACGTGACCATCTCCAACTCCAAGGTGCTCAACTC
CCAGAACGGTGTCCGCATCAAGACCATCTACGGCAAGACTGGCACTGTCG
AGAACGTCAAGTTTGAGGACATCACCCTGTCCGACATCAGCAAGTACGGT
ATTGTCGTTGAGCAGGACTACGAGAACGGCAGCCCCACCGGCACGCCCAC
CAACGGTGTCAAGGTTGAGGACATCACTTTCAAGAAGGTCACCGGCAGCG
TCAAGAGCTCTGGTACTGACATCTACATCCTGTGCGGTTCCGGCAGCTGC
TCGAACTGGACCTGGAGCGGTGTTGATGTGACTGGCGGCAAGAAGAGCAG
CAAGTGCAAGAACGTCCCCTCGGGCGCTTCCTGCAGCGATTAAGTCATCT
TCGAGGGTGAGACCACCTTCGGCTACAAGGAATGGAAGGGTCCCCTGATC
TCCATGTCCGGTACCGACATCACCGTCAAGCAGGCCTCCGGTGCCAAGAT
CAACTGCGACGGTGCTCGCTGGTGGGACGGCAAGGGTAGCAACGGTGGCA
AGACCAAGCCCAAGTTCTTCCAGGCCCACAAGCTCGACCAGTCCAGCATC
ACCGGCCTGAAGGTCTACAACACCCCTGTCCAGGGTTTCAGCATTCTGGC
CGACCACCTGACCATCACCGATGTGACCATCGACAACTCCGCCGGTACCA
GCAAGGGTCACAACACCGATGCCTTTGACATTGGCCAGAGTACCTACATC
ACCATTGACGGTGCCACCGTCTACAACCAGGATGACTGCCTGGCCATCAA
CTCGGGTGAGATGCATTTCCTCCAGAACGCCGTTGTGGCCGCCACTATGG
GCGCTGCGCTGGCCGCCGCTGCTCCTCTCGAGAAGCGCTCCTGCACTTTC
ACCTCCGCCTCTGCTGCCAAGTCCGGCAAGTCCTCTTGCTCCACCATCAC
CCTCGACAACATCGCGGTCCCCGCTGGTGAGACTCTTGACTTGACTGGCC
TCAAGAAGGGTACCACC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC64974_58540ATCC64974_58540Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_58540-T1ATCC64974_58540-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_58540-T1.cdsATCC64974_58540-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_58540-T1.exon3ATCC64974_58540-T1.exon3Aspergillus niger N402exon
ATCC64974_58540-T1.exon2ATCC64974_58540-T1.exon2Aspergillus niger N402exon
ATCC64974_58540-T1.exon1ATCC64974_58540-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteSECRETED:SignalP(1-18)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR012334
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR006626
DBxrefPFAM:PF00295
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000007.1supercontigOGUI01000007.1:5042412..5043645 -
Powered by Drupal