You are here

Home

ATCC64974_65850-T1, ATCC64974_65850-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_65850-T1
Unique NameATCC64974_65850-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000010.1:865403..867091-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_65850-T1 ID=ATCC64974_65850-T1|Name=ATCC64974_65850-T1|organism=Aspergillus niger N402|type=mRNA|length=1689bp|location=Sequence derived from alignment at OGUI01000010.1:865403..867091- (Aspergillus niger N402)
ATGGCGGTCGCAGTGGCTAAGGAGGAGATGGACTACTCAATCAAGCCTGA
GGCTAGTGCCTCGAAAATCGACACGTCGGAGTGGCCGCTTCTTCTGAAGA
ATTATGACAAGCGTACGTTCACTTCAAATCCACATCTCATATCAATGTAG
CTGGTGCTGATTTATAATATCAGTGCTTGTCAGGACCGGCCACTTCACGC
CAATTCCCGCTGGTAGCACTCCTCTGAAGCGTGACCTGAAGTCGTACATC
AACTCCGGTGTCATCAACCTGGACAAGCCTTCAAACCCCTCCAGTCATGA
GGTTGTTGCTTGGATGAAGAGAATCCTGAGGTAAATCTTCTATTACGTTC
TCCTCTTGTCTTCACGATACTGAGACTAGTTTTGTAAAGGGCGGAGAAGA
CTGGTCACAGCGGAACCCTCGACCCCAAGGTCACCGGTTGCTTGATTGTC
TGCATTGACCGTGCTACTCGCCTGGTGAAATCCCAACAGGGTGCCGGAAA
GGAATACGTTTGCGTGATCCGCCTACATGATAAGATCCCCGGTGGCGAGG
CTCAGTTTAAGCGGGCTCTTGAGACCTTGACTGGAGCCCTTTTCCAGCGG
CCGCCATTGATCTCTGCTGTTAAGCGTCAGCTTCGTATCCGGACAATTCA
CGAAAGCAAGCTTTACGAGTTCGATAATGAGAGGCATCTTGGTGTCTTCT
GGGTCAGCTGTGAAGCCGGAACGTACATCAGAACCCTTTGTGTCCACTTG
GGTCTTTTGCTCGGTGTTGGTGCGCACATGCAGGAACTTCGCCGTGTTCG
CAGTGGTGCCATGGATGAGAACAGTGGAATGGTGACTCTACACGACGTTT
TGGACGCCCAATGGATGTACGACAACCAGCGGGACGAGTCTTATTTGAGG
AAGGTCATCAAACCTCTGGAGACTCTTCTCACCACGTACAAGCGTATCGT
TGTCAAAGACAGTGCTGTTAACGCTGTATGCTATGGTGCTAAGCTTATGG
TCCCTGGTCTCCTCCGCTTCGGTAAGATCTTGTCTTCTCCATATGGTTCG
AATTGAATTGCTGACTCTGGTGAAGAGGCTGGTATTGAGGTCAACGAAGA
GGTAGTTCTCATGACCACTAAGGGTGAGGCTATTGCCATCGGTATCGCTC
AAATGTCGACCGTTGAGCTGTCCACCTGCGATCACGGCGTTGTGGCCAAG
GTCAAGCGTTGTATCATGGAACGCGACCTGTACCCGCGTCGCTGGGGTTT
GGGGCCTGTGGCTTTGGAGAAGAAGAAGCTCAAGTCCGCCGGAAAACTGG
ATGTAAGCTATCCTATGGAATACTCACATATGTTCTGGCTTTGCTGACAA
ATAATGCAGAAATACGGTCGTGCTAACGAGGCTACGCCTGCTAAATGGAA
GAACGACTACAAGGATTACAGCGCACCCGAAGAAGAAGGCGCACAGGCAG
TGGCTCAACCTGTTGCTCAAGAAGAAACCGCTACTCCTGCTGAGCAAACC
GAAACCCCTTCTTCTCCCAACAAGATGGATGTTGATGACGACGACGACGA
GAAGAAGAAGCGCAAGCGCCACGAAGGTGAGACGCCCGAGGAACGGGCCG
AGCGCAAGCGCAAGAAGAAGGAGAAGAAGGAAAAGAAGGAGCGCCGGAAG
TCCAAACAGGAGAAGGAAGAGAGCGACGATAGTGATTAA
back to top

Coding sequence (CDS) from alignment at OGUI01000010.1:865403..867091-

>ATCC64974_65850-T1 ID=ATCC64974_65850-T1|Name=ATCC64974_65850-T1|organism=Aspergillus niger N402|type=CDS|length=7290bp|location=Sequence derived from alignment at OGUI01000010.1:865403..867091- (Aspergillus niger N402)
AAATACGGTCGTGCTAACGAGGCTACGCCTGCTAAATGGAAGAACGACTA
CAAGGATTACAGCGCACCCGAAGAAGAAGGCGCACAGGCAGTGGCTCAAC
CTGTTGCTCAAGAAGAAACCGCTACTCCTGCTGAGCAAACCGAAACCCCT
TCTTCTCCCAACAAGATGGATGTTGATGACGACGACGACGAGAAGAAGAA
GCGCAAGCGCCACGAAGGTGAGACGCCCGAGGAACGGGCCGAGCGCAAGC
GCAAGAAGAAGGAGAAGAAGGAAAAGAAGGAGCGCCGGAAGTCCAAACAG
GAGAAGGAAGAGAGCGACGATAGTGATTAAAGGCTGGTATTGAGGTCAAC
GAAGAGGTAGTTCTCATGACCACTAAGGGTGAGGCTATTGCCATCGGTAT
CGCTCAAATGTCGACCGTTGAGCTGTCCACCTGCGATCACGGCGTTGTGG
CCAAGGTCAAGCGTTGTATCATGGAACGCGACCTGTACCCGCGTCGCTGG
GGTTTGGGGCCTGTGGCTTTGGAGAAGAAGAAGCTCAAGTCCGCCGGAAA
ACTGGATGGCGGAGAAGACTGGTCACAGCGGAACCCTCGACCCCAAGGTC
ACCGGTTGCTTGATTGTCTGCATTGACCGTGCTACTCGCCTGGTGAAATC
CCAACAGGGTGCCGGAAAGGAATACGTTTGCGTGATCCGCCTACATGATA
AGATCCCCGGTGGCGAGGCTCAGTTTAAGCGGGCTCTTGAGACCTTGACT
GGAGCCCTTTTCCAGCGGCCGCCATTGATCTCTGCTGTTAAGCGTCAGCT
TCGTATCCGGACAATTCACGAAAGCAAGCTTTACGAGTTCGATAATGAGA
GGCATCTTGGTGTCTTCTGGGTCAGCTGTGAAGCCGGAACGTACATCAGA
ACCCTTTGTGTCCACTTGGGTCTTTTGCTCGGTGTTGGTGCGCACATGCA
GGAACTTCGCCGTGTTCGCAGTGGTGCCATGGATGAGAACAGTGGAATGG
TGACTCTACACGACGTTTTGGACGCCCAATGGATGTACGACAACCAGCGG
GACGAGTCTTATTTGAGGAAGGTCATCAAACCTCTGGAGACTCTTCTCAC
CACGTACAAGCGTATCGTTGTCAAAGACAGTGCTGTTAACGCTGTATGCT
ATGGTGCTAAGCTTATGGTCCCTGGTCTCCTCCGCTTCGTGCTTGTCAGG
ACCGGCCACTTCACGCCAATTCCCGCTGGTAGCACTCCTCTGAAGCGTGA
CCTGAAGTCGTACATCAACTCCGGTGTCATCAACCTGGACAAGCCTTCAA
ACCCCTCCAGTCATGAGGTTGTTGCTTGGATGAAGAGAATCCTGAGATGG
CGGTCGCAGTGGCTAAGGAGGAGATGGACTACTCAATCAAGCCTGAGGCT
AGTGCCTCGAAAATCGACACGTCGGAGTGGCCGCTTCTTCTGAAGAATTA
TGACAAGCAAATACGGTCGTGCTAACGAGGCTACGCCTGCTAAATGGAAG
AACGACTACAAGGATTACAGCGCACCCGAAGAAGAAGGCGCACAGGCAGT
GGCTCAACCTGTTGCTCAAGAAGAAACCGCTACTCCTGCTGAGCAAACCG
AAACCCCTTCTTCTCCCAACAAGATGGATGTTGATGACGACGACGACGAG
AAGAAGAAGCGCAAGCGCCACGAAGGTGAGACGCCCGAGGAACGGGCCGA
GCGCAAGCGCAAGAAGAAGGAGAAGAAGGAAAAGAAGGAGCGCCGGAAGT
CCAAACAGGAGAAGGAAGAGAGCGACGATAGTGATTAAAGGCTGGTATTG
AGGTCAACGAAGAGGTAGTTCTCATGACCACTAAGGGTGAGGCTATTGCC
ATCGGTATCGCTCAAATGTCGACCGTTGAGCTGTCCACCTGCGATCACGG
CGTTGTGGCCAAGGTCAAGCGTTGTATCATGGAACGCGACCTGTACCCGC
GTCGCTGGGGTTTGGGGCCTGTGGCTTTGGAGAAGAAGAAGCTCAAGTCC
GCCGGAAAACTGGATGGCGGAGAAGACTGGTCACAGCGGAACCCTCGACC
CCAAGGTCACCGGTTGCTTGATTGTCTGCATTGACCGTGCTACTCGCCTG
GTGAAATCCCAACAGGGTGCCGGAAAGGAATACGTTTGCGTGATCCGCCT
ACATGATAAGATCCCCGGTGGCGAGGCTCAGTTTAAGCGGGCTCTTGAGA
CCTTGACTGGAGCCCTTTTCCAGCGGCCGCCATTGATCTCTGCTGTTAAG
CGTCAGCTTCGTATCCGGACAATTCACGAAAGCAAGCTTTACGAGTTCGA
TAATGAGAGGCATCTTGGTGTCTTCTGGGTCAGCTGTGAAGCCGGAACGT
ACATCAGAACCCTTTGTGTCCACTTGGGTCTTTTGCTCGGTGTTGGTGCG
CACATGCAGGAACTTCGCCGTGTTCGCAGTGGTGCCATGGATGAGAACAG
TGGAATGGTGACTCTACACGACGTTTTGGACGCCCAATGGATGTACGACA
ACCAGCGGGACGAGTCTTATTTGAGGAAGGTCATCAAACCTCTGGAGACT
CTTCTCACCACGTACAAGCGTATCGTTGTCAAAGACAGTGCTGTTAACGC
TGTATGCTATGGTGCTAAGCTTATGGTCCCTGGTCTCCTCCGCTTCGTGC
TTGTCAGGACCGGCCACTTCACGCCAATTCCCGCTGGTAGCACTCCTCTG
AAGCGTGACCTGAAGTCGTACATCAACTCCGGTGTCATCAACCTGGACAA
GCCTTCAAACCCCTCCAGTCATGAGGTTGTTGCTTGGATGAAGAGAATCC
TGAGATGGCGGTCGCAGTGGCTAAGGAGGAGATGGACTACTCAATCAAGC
CTGAGGCTAGTGCCTCGAAAATCGACACGTCGGAGTGGCCGCTTCTTCTG
AAGAATTATGACAAGCAAATACGGTCGTGCTAACGAGGCTACGCCTGCTA
AATGGAAGAACGACTACAAGGATTACAGCGCACCCGAAGAAGAAGGCGCA
CAGGCAGTGGCTCAACCTGTTGCTCAAGAAGAAACCGCTACTCCTGCTGA
GCAAACCGAAACCCCTTCTTCTCCCAACAAGATGGATGTTGATGACGACG
ACGACGAGAAGAAGAAGCGCAAGCGCCACGAAGGTGAGACGCCCGAGGAA
CGGGCCGAGCGCAAGCGCAAGAAGAAGGAGAAGAAGGAAAAGAAGGAGCG
CCGGAAGTCCAAACAGGAGAAGGAAGAGAGCGACGATAGTGATTAAAGGC
TGGTATTGAGGTCAACGAAGAGGTAGTTCTCATGACCACTAAGGGTGAGG
CTATTGCCATCGGTATCGCTCAAATGTCGACCGTTGAGCTGTCCACCTGC
GATCACGGCGTTGTGGCCAAGGTCAAGCGTTGTATCATGGAACGCGACCT
GTACCCGCGTCGCTGGGGTTTGGGGCCTGTGGCTTTGGAGAAGAAGAAGC
TCAAGTCCGCCGGAAAACTGGATGGCGGAGAAGACTGGTCACAGCGGAAC
CCTCGACCCCAAGGTCACCGGTTGCTTGATTGTCTGCATTGACCGTGCTA
CTCGCCTGGTGAAATCCCAACAGGGTGCCGGAAAGGAATACGTTTGCGTG
ATCCGCCTACATGATAAGATCCCCGGTGGCGAGGCTCAGTTTAAGCGGGC
TCTTGAGACCTTGACTGGAGCCCTTTTCCAGCGGCCGCCATTGATCTCTG
CTGTTAAGCGTCAGCTTCGTATCCGGACAATTCACGAAAGCAAGCTTTAC
GAGTTCGATAATGAGAGGCATCTTGGTGTCTTCTGGGTCAGCTGTGAAGC
CGGAACGTACATCAGAACCCTTTGTGTCCACTTGGGTCTTTTGCTCGGTG
TTGGTGCGCACATGCAGGAACTTCGCCGTGTTCGCAGTGGTGCCATGGAT
GAGAACAGTGGAATGGTGACTCTACACGACGTTTTGGACGCCCAATGGAT
GTACGACAACCAGCGGGACGAGTCTTATTTGAGGAAGGTCATCAAACCTC
TGGAGACTCTTCTCACCACGTACAAGCGTATCGTTGTCAAAGACAGTGCT
GTTAACGCTGTATGCTATGGTGCTAAGCTTATGGTCCCTGGTCTCCTCCG
CTTCGTGCTTGTCAGGACCGGCCACTTCACGCCAATTCCCGCTGGTAGCA
CTCCTCTGAAGCGTGACCTGAAGTCGTACATCAACTCCGGTGTCATCAAC
CTGGACAAGCCTTCAAACCCCTCCAGTCATGAGGTTGTTGCTTGGATGAA
GAGAATCCTGAGATGGCGGTCGCAGTGGCTAAGGAGGAGATGGACTACTC
AATCAAGCCTGAGGCTAGTGCCTCGAAAATCGACACGTCGGAGTGGCCGC
TTCTTCTGAAGAATTATGACAAGCAAATACGGTCGTGCTAACGAGGCTAC
GCCTGCTAAATGGAAGAACGACTACAAGGATTACAGCGCACCCGAAGAAG
AAGGCGCACAGGCAGTGGCTCAACCTGTTGCTCAAGAAGAAACCGCTACT
CCTGCTGAGCAAACCGAAACCCCTTCTTCTCCCAACAAGATGGATGTTGA
TGACGACGACGACGAGAAGAAGAAGCGCAAGCGCCACGAAGGTGAGACGC
CCGAGGAACGGGCCGAGCGCAAGCGCAAGAAGAAGGAGAAGAAGGAAAAG
AAGGAGCGCCGGAAGTCCAAACAGGAGAAGGAAGAGAGCGACGATAGTGA
TTAAAGGCTGGTATTGAGGTCAACGAAGAGGTAGTTCTCATGACCACTAA
GGGTGAGGCTATTGCCATCGGTATCGCTCAAATGTCGACCGTTGAGCTGT
CCACCTGCGATCACGGCGTTGTGGCCAAGGTCAAGCGTTGTATCATGGAA
CGCGACCTGTACCCGCGTCGCTGGGGTTTGGGGCCTGTGGCTTTGGAGAA
GAAGAAGCTCAAGTCCGCCGGAAAACTGGATGGCGGAGAAGACTGGTCAC
AGCGGAACCCTCGACCCCAAGGTCACCGGTTGCTTGATTGTCTGCATTGA
CCGTGCTACTCGCCTGGTGAAATCCCAACAGGGTGCCGGAAAGGAATACG
TTTGCGTGATCCGCCTACATGATAAGATCCCCGGTGGCGAGGCTCAGTTT
AAGCGGGCTCTTGAGACCTTGACTGGAGCCCTTTTCCAGCGGCCGCCATT
GATCTCTGCTGTTAAGCGTCAGCTTCGTATCCGGACAATTCACGAAAGCA
AGCTTTACGAGTTCGATAATGAGAGGCATCTTGGTGTCTTCTGGGTCAGC
TGTGAAGCCGGAACGTACATCAGAACCCTTTGTGTCCACTTGGGTCTTTT
GCTCGGTGTTGGTGCGCACATGCAGGAACTTCGCCGTGTTCGCAGTGGTG
CCATGGATGAGAACAGTGGAATGGTGACTCTACACGACGTTTTGGACGCC
CAATGGATGTACGACAACCAGCGGGACGAGTCTTATTTGAGGAAGGTCAT
CAAACCTCTGGAGACTCTTCTCACCACGTACAAGCGTATCGTTGTCAAAG
ACAGTGCTGTTAACGCTGTATGCTATGGTGCTAAGCTTATGGTCCCTGGT
CTCCTCCGCTTCGTGCTTGTCAGGACCGGCCACTTCACGCCAATTCCCGC
TGGTAGCACTCCTCTGAAGCGTGACCTGAAGTCGTACATCAACTCCGGTG
TCATCAACCTGGACAAGCCTTCAAACCCCTCCAGTCATGAGGTTGTTGCT
TGGATGAAGAGAATCCTGAGATGGCGGTCGCAGTGGCTAAGGAGGAGATG
GACTACTCAATCAAGCCTGAGGCTAGTGCCTCGAAAATCGACACGTCGGA
GTGGCCGCTTCTTCTGAAGAATTATGACAAGCAAATACGGTCGTGCTAAC
GAGGCTACGCCTGCTAAATGGAAGAACGACTACAAGGATTACAGCGCACC
CGAAGAAGAAGGCGCACAGGCAGTGGCTCAACCTGTTGCTCAAGAAGAAA
CCGCTACTCCTGCTGAGCAAACCGAAACCCCTTCTTCTCCCAACAAGATG
GATGTTGATGACGACGACGACGAGAAGAAGAAGCGCAAGCGCCACGAAGG
TGAGACGCCCGAGGAACGGGCCGAGCGCAAGCGCAAGAAGAAGGAGAAGA
AGGAAAAGAAGGAGCGCCGGAAGTCCAAACAGGAGAAGGAAGAGAGCGAC
GATAGTGATTAAAGGCTGGTATTGAGGTCAACGAAGAGGTAGTTCTCATG
ACCACTAAGGGTGAGGCTATTGCCATCGGTATCGCTCAAATGTCGACCGT
TGAGCTGTCCACCTGCGATCACGGCGTTGTGGCCAAGGTCAAGCGTTGTA
TCATGGAACGCGACCTGTACCCGCGTCGCTGGGGTTTGGGGCCTGTGGCT
TTGGAGAAGAAGAAGCTCAAGTCCGCCGGAAAACTGGATGGCGGAGAAGA
CTGGTCACAGCGGAACCCTCGACCCCAAGGTCACCGGTTGCTTGATTGTC
TGCATTGACCGTGCTACTCGCCTGGTGAAATCCCAACAGGGTGCCGGAAA
GGAATACGTTTGCGTGATCCGCCTACATGATAAGATCCCCGGTGGCGAGG
CTCAGTTTAAGCGGGCTCTTGAGACCTTGACTGGAGCCCTTTTCCAGCGG
CCGCCATTGATCTCTGCTGTTAAGCGTCAGCTTCGTATCCGGACAATTCA
CGAAAGCAAGCTTTACGAGTTCGATAATGAGAGGCATCTTGGTGTCTTCT
GGGTCAGCTGTGAAGCCGGAACGTACATCAGAACCCTTTGTGTCCACTTG
GGTCTTTTGCTCGGTGTTGGTGCGCACATGCAGGAACTTCGCCGTGTTCG
CAGTGGTGCCATGGATGAGAACAGTGGAATGGTGACTCTACACGACGTTT
TGGACGCCCAATGGATGTACGACAACCAGCGGGACGAGTCTTATTTGAGG
AAGGTCATCAAACCTCTGGAGACTCTTCTCACCACGTACAAGCGTATCGT
TGTCAAAGACAGTGCTGTTAACGCTGTATGCTATGGTGCTAAGCTTATGG
TCCCTGGTCTCCTCCGCTTCGTGCTTGTCAGGACCGGCCACTTCACGCCA
ATTCCCGCTGGTAGCACTCCTCTGAAGCGTGACCTGAAGTCGTACATCAA
CTCCGGTGTCATCAACCTGGACAAGCCTTCAAACCCCTCCAGTCATGAGG
TTGTTGCTTGGATGAAGAGAATCCTGAGATGGCGGTCGCAGTGGCTAAGG
AGGAGATGGACTACTCAATCAAGCCTGAGGCTAGTGCCTCGAAAATCGAC
ACGTCGGAGTGGCCGCTTCTTCTGAAGAATTATGACAAGC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBF5ATCC64974_65850Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_65850-T1ATCC64974_65850-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_65850-T1.cdsATCC64974_65850-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_65850-T1.exon5ATCC64974_65850-T1.exon5Aspergillus niger N402exon
ATCC64974_65850-T1.exon4ATCC64974_65850-T1.exon4Aspergillus niger N402exon
ATCC64974_65850-T1.exon3ATCC64974_65850-T1.exon3Aspergillus niger N402exon
ATCC64974_65850-T1.exon2ATCC64974_65850-T1.exon2Aspergillus niger N402exon
ATCC64974_65850-T1.exon1ATCC64974_65850-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG0926273Q
DBxrefInterPro:IPR020103
DBxrefInterPro:IPR015947
DBxrefInterPro:IPR004521
DBxrefInterPro:IPR004802
DBxrefInterPro:IPR002501
DBxrefInterPro:IPR032819
DBxrefInterPro:IPR012960
DBxrefInterPro:IPR002478
DBxrefPFAM:PF01509
DBxrefPFAM:PF16198
DBxrefPFAM:PF01472
DBxrefPFAM:PF08068
Productcentromere/microtubule-binding protein cbf5
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000010.1supercontigOGUI01000010.1:865403..867091 -
Powered by Drupal