You are here

Home

ATCC64974_69160-T1, ATCC64974_69160-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_69160-T1
Unique NameATCC64974_69160-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000010.1:2038686..2039784-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_69160-T1 ID=ATCC64974_69160-T1|Name=ATCC64974_69160-T1|organism=Aspergillus niger N402|type=mRNA|length=1099bp|location=Sequence derived from alignment at OGUI01000010.1:2038686..2039784- (Aspergillus niger N402)
ATGGCTGACGAGCACTACGTGAGTTTTCCGATAACTAAAGACATGTTGAA
GAGGACTAGGAAGAGTTTGAACTAACGTTCTTTTGCCTACAGAACGCCGA
GGAGGCTGCCGGTACGTTTGAAATTTTTTTGCCTGAACCACCCTTTCCTG
CCCTGGACCCCGGAAACAGAGACGAATTCGCGTTGTGGGAAACGGTATTT
TGGCTGGATATACGATATGATATGGACATAATTCGATGATGCGACACTTG
GAAATTTTTGAGGAAGGGATGGGGGGGCAACGGACCGAATTCTCTGTCGA
CGTTTCTATTCTTGCTTTTGCCACACCAACTACGAGAACCACGCAGCAGT
GATTGAAGGGAACACAAGGCGCTGACGTATCCGGGAAACAGAGATCAAGA
AGAGAAGACAGTTCCGCAAGTTCACCTACCGCGGTATTGACCTCGACCAG
TACGTTTCACCATGAATATCTATCATACCCACACTGCACTCCGAACCGAC
GGCCTCGACTCCGAACGAGCGATATCAGCAATATGGACATTTCTGGATAT
TTGCGGAATATCCTCGTGGGAGTCGACGGCCGAGGGAAGGAAATATGACA
ATCTATCGAAAAGACCGGCGGGAAATATGTGGAATGGTATCTGACCTGTT
TGTCTGCACAGGCTCCTTGACCTCTCCTCCGAACAGCTCCGTGATGTCGT
TCACGCCCGCGCTCGTCGTCGCTTCAACCGCGGTCTGAAGCGCAAGCCCA
TGGGTCTCATCAAGAAGCTCCGCAAGGCCAAGCAGGAGGCTCGCCCCAAC
GAGAAGCCCGACCTCGTCAAGACCCACCTCCGTGACATGATCGTTGTCCC
CGAGATGATCGGCAGCGTCATCGGTATCTACTCCGGTAAGGAGTTCAACC
AGATCGAAGTCAAGCCCGAGATGGTTGGCCACTACCTGGGTGAATTCTCT
ATCTCCTAGTACGTACCCCTATACCCATATCCCCCGCGAGCGAATCCAAA
TGAATATGGTATGTCTAACAACCACACAGCAAGCCCGTCAAGCACGGTCG
TCCCGGTATCGGTGCCACCCACTCTTCCCGTTTCATTCCCCTCAAGTAA
back to top

Coding sequence (CDS) from alignment at OGUI01000010.1:2038686..2039784-

>ATCC64974_69160-T1 ID=ATCC64974_69160-T1|Name=ATCC64974_69160-T1|organism=Aspergillus niger N402|type=CDS|length=2310bp|location=Sequence derived from alignment at OGUI01000010.1:2038686..2039784- (Aspergillus niger N402)
CAAGCCCGTCAAGCACGGTCGTCCCGGTATCGGTGCCACCCACTCTTCCC
GTTTCATTCCCCTCAAGTAAGCTCCTTGACCTCTCCTCCGAACAGCTCCG
TGATGTCGTTCACGCCCGCGCTCGTCGTCGCTTCAACCGCGGTCTGAAGC
GCAAGCCCATGGGTCTCATCAAGAAGCTCCGCAAGGCCAAGCAGGAGGCT
CGCCCCAACGAGAAGCCCGACCTCGTCAAGACCCACCTCCGTGACATGAT
CGTTGTCCCCGAGATGATCGGCAGCGTCATCGGTATCTACTCCGGTAAGG
AGTTCAACCAGATCGAAGTCAAGCCCGAGATGGTTGGCCACTACCTGGGT
GAATTCTCTATCTCCTAAGATCAAGAAGAGAAGACAGTTCCGCAAGTTCA
CCTACCGCGGTATTGACCTCGACCAAACGCCGAGGAGGCTGCCGATGGCT
GACGAGCACTACCAAGCCCGTCAAGCACGGTCGTCCCGGTATCGGTGCCA
CCCACTCTTCCCGTTTCATTCCCCTCAAGTAAGCTCCTTGACCTCTCCTC
CGAACAGCTCCGTGATGTCGTTCACGCCCGCGCTCGTCGTCGCTTCAACC
GCGGTCTGAAGCGCAAGCCCATGGGTCTCATCAAGAAGCTCCGCAAGGCC
AAGCAGGAGGCTCGCCCCAACGAGAAGCCCGACCTCGTCAAGACCCACCT
CCGTGACATGATCGTTGTCCCCGAGATGATCGGCAGCGTCATCGGTATCT
ACTCCGGTAAGGAGTTCAACCAGATCGAAGTCAAGCCCGAGATGGTTGGC
CACTACCTGGGTGAATTCTCTATCTCCTAAGATCAAGAAGAGAAGACAGT
TCCGCAAGTTCACCTACCGCGGTATTGACCTCGACCAAACGCCGAGGAGG
CTGCCGATGGCTGACGAGCACTACCAAGCCCGTCAAGCACGGTCGTCCCG
GTATCGGTGCCACCCACTCTTCCCGTTTCATTCCCCTCAAGTAAGCTCCT
TGACCTCTCCTCCGAACAGCTCCGTGATGTCGTTCACGCCCGCGCTCGTC
GTCGCTTCAACCGCGGTCTGAAGCGCAAGCCCATGGGTCTCATCAAGAAG
CTCCGCAAGGCCAAGCAGGAGGCTCGCCCCAACGAGAAGCCCGACCTCGT
CAAGACCCACCTCCGTGACATGATCGTTGTCCCCGAGATGATCGGCAGCG
TCATCGGTATCTACTCCGGTAAGGAGTTCAACCAGATCGAAGTCAAGCCC
GAGATGGTTGGCCACTACCTGGGTGAATTCTCTATCTCCTAAGATCAAGA
AGAGAAGACAGTTCCGCAAGTTCACCTACCGCGGTATTGACCTCGACCAA
ACGCCGAGGAGGCTGCCGATGGCTGACGAGCACTACCAAGCCCGTCAAGC
ACGGTCGTCCCGGTATCGGTGCCACCCACTCTTCCCGTTTCATTCCCCTC
AAGTAAGCTCCTTGACCTCTCCTCCGAACAGCTCCGTGATGTCGTTCACG
CCCGCGCTCGTCGTCGCTTCAACCGCGGTCTGAAGCGCAAGCCCATGGGT
CTCATCAAGAAGCTCCGCAAGGCCAAGCAGGAGGCTCGCCCCAACGAGAA
GCCCGACCTCGTCAAGACCCACCTCCGTGACATGATCGTTGTCCCCGAGA
TGATCGGCAGCGTCATCGGTATCTACTCCGGTAAGGAGTTCAACCAGATC
GAAGTCAAGCCCGAGATGGTTGGCCACTACCTGGGTGAATTCTCTATCTC
CTAAGATCAAGAAGAGAAGACAGTTCCGCAAGTTCACCTACCGCGGTATT
GACCTCGACCAAACGCCGAGGAGGCTGCCGATGGCTGACGAGCACTACCA
AGCCCGTCAAGCACGGTCGTCCCGGTATCGGTGCCACCCACTCTTCCCGT
TTCATTCCCCTCAAGTAAGCTCCTTGACCTCTCCTCCGAACAGCTCCGTG
ATGTCGTTCACGCCCGCGCTCGTCGTCGCTTCAACCGCGGTCTGAAGCGC
AAGCCCATGGGTCTCATCAAGAAGCTCCGCAAGGCCAAGCAGGAGGCTCG
CCCCAACGAGAAGCCCGACCTCGTCAAGACCCACCTCCGTGACATGATCG
TTGTCCCCGAGATGATCGGCAGCGTCATCGGTATCTACTCCGGTAAGGAG
TTCAACCAGATCGAAGTCAAGCCCGAGATGGTTGGCCACTACCTGGGTGA
ATTCTCTATCTCCTAAGATCAAGAAGAGAAGACAGTTCCGCAAGTTCACC
TACCGCGGTATTGACCTCGACCAAACGCCGAGGAGGCTGCCGATGGCTGA
CGAGCACTAC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS15ATCC64974_69160Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_69160-T1ATCC64974_69160-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_69160-T1.cdsATCC64974_69160-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_69160-T1.exon5ATCC64974_69160-T1.exon5Aspergillus niger N402exon
ATCC64974_69160-T1.exon4ATCC64974_69160-T1.exon4Aspergillus niger N402exon
ATCC64974_69160-T1.exon3ATCC64974_69160-T1.exon3Aspergillus niger N402exon
ATCC64974_69160-T1.exon2ATCC64974_69160-T1.exon2Aspergillus niger N402exon
ATCC64974_69160-T1.exon1ATCC64974_69160-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG092658SK
DBxrefInterPro:IPR020934
DBxrefInterPro:IPR023575
DBxrefInterPro:IPR005713
DBxrefInterPro:IPR002222
DBxrefPFAM:PF00203
Productribosomal protein S15
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000010.1supercontigOGUI01000010.1:2038686..2039784 -
Powered by Drupal