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ATCC64974_69360-T1, ATCC64974_69360-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_69360-T1
Unique NameATCC64974_69360-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000010.1:2099081..2099720+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_69360-T1 ID=ATCC64974_69360-T1|Name=ATCC64974_69360-T1|organism=Aspergillus niger N402|type=mRNA|length=640bp|location=Sequence derived from alignment at OGUI01000010.1:2099081..2099720+ (Aspergillus niger N402)
ATGGGTCGCGTCCGTACCAAGGTGAGCATACACGACCGCAATAATGAAGG
AAAGAAAGAATATCAATTCTAACGAAAATGCGCGCGACAATAGACAGTCA
AGCGTTCCGCTAAGGTCGTTATCGAGCGTTACTACCCCAAGTTGACGCTC
GACTTCGAGACCAACAAGCGTATCTGCGATGAGATCGCTATCATTGCCTC
CAAGCGTCTCCGCAACAAGGTTAGTGATTACCATCTTTTTTCTCCCGGAA
ATTCCGGATATAATGGTCAAATGGCAATATACTAATAAGGAATTGGATTT
AGATCGCTGGTTACACCACCCACCTTATGAAGCGTATCCAGCGTGGCCCT
GTCCGCGGTATCTCCTTCAAGCTCCAGGAGGAGGAGCGTGAGCGCAAGGA
TCAGTACGTTCCTGAGGTCTCCGCTCTGGATGTTTCCCAGACCGAGTCCG
GCCAGCTCGACGTCGACTCTGAGACCAAGGACCTGCTCAAGAGCATGGGC
GTAAGTTCTCCCTTATGGAATCTACATTCATGATTTATATCATGTCTAAC
TCGATCGTGCTTTAGTTCGACAACCTCAAGGTCAACGTCATCCCCGTCTC
CCAGCAGCAGGCTCAGGAGCGCCCCCGCCGCTACCGGTAG
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Coding sequence (CDS) from alignment at OGUI01000010.1:2099081..2099720+

>ATCC64974_69360-T1 ID=ATCC64974_69360-T1|Name=ATCC64974_69360-T1|organism=Aspergillus niger N402|type=CDS|length=1680bp|location=Sequence derived from alignment at OGUI01000010.1:2099081..2099720+ (Aspergillus niger N402)
ATGGGTCGCGTCCGTACCAAGACAGTCAAGCGTTCCGCTAAGGTCGTTAT
CGAGCGTTACTACCCCAAGTTGACGCTCGACTTCGAGACCAACAAGCGTA
TCTGCGATGAGATCGCTATCATTGCCTCCAAGCGTCTCCGCAACAAGATC
GCTGGTTACACCACCCACCTTATGAAGCGTATCCAGCGTGGCCCTGTCCG
CGGTATCTCCTTCAAGCTCCAGGAGGAGGAGCGTGAGCGCAAGGATCAGT
ACGTTCCTGAGGTCTCCGCTCTGGATGTTTCCCAGACCGAGTCCGGCCAG
CTCGACGTCGACTCTGAGACCAAGGACCTGCTCAAGAGCATGGGCTTCGA
CAACCTCAAGGTCAACGTCATCCCCGTCTCCCAGCAGCAGGCTCAGGAGC
GCCCCCGCCGCTACCGGTAGATGGGTCGCGTCCGTACCAAGACAGTCAAG
CGTTCCGCTAAGGTCGTTATCGAGCGTTACTACCCCAAGTTGACGCTCGA
CTTCGAGACCAACAAGCGTATCTGCGATGAGATCGCTATCATTGCCTCCA
AGCGTCTCCGCAACAAGATCGCTGGTTACACCACCCACCTTATGAAGCGT
ATCCAGCGTGGCCCTGTCCGCGGTATCTCCTTCAAGCTCCAGGAGGAGGA
GCGTGAGCGCAAGGATCAGTACGTTCCTGAGGTCTCCGCTCTGGATGTTT
CCCAGACCGAGTCCGGCCAGCTCGACGTCGACTCTGAGACCAAGGACCTG
CTCAAGAGCATGGGCTTCGACAACCTCAAGGTCAACGTCATCCCCGTCTC
CCAGCAGCAGGCTCAGGAGCGCCCCCGCCGCTACCGGTAGATGGGTCGCG
TCCGTACCAAGACAGTCAAGCGTTCCGCTAAGGTCGTTATCGAGCGTTAC
TACCCCAAGTTGACGCTCGACTTCGAGACCAACAAGCGTATCTGCGATGA
GATCGCTATCATTGCCTCCAAGCGTCTCCGCAACAAGATCGCTGGTTACA
CCACCCACCTTATGAAGCGTATCCAGCGTGGCCCTGTCCGCGGTATCTCC
TTCAAGCTCCAGGAGGAGGAGCGTGAGCGCAAGGATCAGTACGTTCCTGA
GGTCTCCGCTCTGGATGTTTCCCAGACCGAGTCCGGCCAGCTCGACGTCG
ACTCTGAGACCAAGGACCTGCTCAAGAGCATGGGCTTCGACAACCTCAAG
GTCAACGTCATCCCCGTCTCCCAGCAGCAGGCTCAGGAGCGCCCCCGCCG
CTACCGGTAGATGGGTCGCGTCCGTACCAAGACAGTCAAGCGTTCCGCTA
AGGTCGTTATCGAGCGTTACTACCCCAAGTTGACGCTCGACTTCGAGACC
AACAAGCGTATCTGCGATGAGATCGCTATCATTGCCTCCAAGCGTCTCCG
CAACAAGATCGCTGGTTACACCACCCACCTTATGAAGCGTATCCAGCGTG
GCCCTGTCCGCGGTATCTCCTTCAAGCTCCAGGAGGAGGAGCGTGAGCGC
AAGGATCAGTACGTTCCTGAGGTCTCCGCTCTGGATGTTTCCCAGACCGA
GTCCGGCCAGCTCGACGTCGACTCTGAGACCAAGGACCTGCTCAAGAGCA
TGGGCTTCGACAACCTCAAGGTCAACGTCATCCCCGTCTCCCAGCAGCAG
GCTCAGGAGCGCCCCCGCCGCTACCGGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS17ATCC64974_69360Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_69360-T1.exon1ATCC64974_69360-T1.exon1Aspergillus niger N402exon
ATCC64974_69360-T1.exon2ATCC64974_69360-T1.exon2Aspergillus niger N402exon
ATCC64974_69360-T1.exon3ATCC64974_69360-T1.exon3Aspergillus niger N402exon
ATCC64974_69360-T1.exon4ATCC64974_69360-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_69360-T1.cdsATCC64974_69360-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_69360-T1ATCC64974_69360-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR018273
DBxrefInterPro:IPR001210
DBxrefInterPro:IPR036401
DBxrefPFAM:PF00833
Product40S ribosomal protein S17
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000010.1supercontigOGUI01000010.1:2099081..2099720 +
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