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Sequences
The following sequences are available for this feature:
mRNA from alignment at OGUI01000010.1:2412578..2413837- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC64974_70430-T1 ID=ATCC64974_70430-T1|Name=ATCC64974_70430-T1|organism=Aspergillus niger N402|type=mRNA|length=1260bp|location=Sequence derived from alignment at OGUI01000010.1:2412578..2413837- (Aspergillus niger N402)
ATGTCAGCCGCTACCGATAAGGCACGCTTCTTTCTGGAGAAGTCGGTCCC
TGAGCTCAAGGAGTTTGAGCGGAAGAAAATCTTCTCCAAGGTAAATTGGT
GCCCATGATCATTATCTACCCACATCGATGCGCTTAGGAAACTGACATGC
CGTTTGATCTGCCTGCAGGAGGAAATTACAGCCATCATCAAGAAACGGTC
CGATTTTGAGCACAAGCTGAATGCACGTGGCGCCCTGCCTGTTGACTTCG
TCCGATATGCGCAATACGAGATGAACCTAGACACCCTGCGCCGGAAGAGG
GTGAAGCGGTTGGGAATCAGATCGGCAGGATACACTGGGCAAAGGCGCAT
CTTCTTCATCCTTGACCGCGCAACTCGCAAGTTTCATGGTGATGTGGGCT
TGTGGGTGCAGTACCTCGAATACGCGAAACAACAGAAAGCCTACAAAAAG
GTCTCGACCATCCTTACGGACGCCTTGCGGTTACATCCCGCCAACGTCGA
CTTGTGGCTATATGCTGCGCAGTACTCTGTGGATGAGCATGCGGATATGA
CACAATCTAGGGGTTACATGCAGCGCGGTTTGCGCTTCTGCAAAAGCTCC
AAGAAGCTGTGGCTCCACTATGCCAAACTGGAATTGATATATATCGCCAA
GCTGGTTGCTCGACAGCGGATCTTGGGTCTCGATAAGCCGATCGAAGCCC
CGAAGCCAGCGCAGGAGGACGATTTAGATGCCGACATGATTGCTATGCCC
AAGATCACTGGAGAAGATATCAACCCCGGCGCTGGAGAGGATGGCGGTGT
GGATCAAGTGGCTTTGGACAACCTTGCCAACACCCCAGCCCTGAGTGGTG
CTATCCCTCTCGCCATCTTCGATACGGCCATGAAGAACTTCGAAAATGAC
GACCGTTTCGGTCATGAGTTCTACGATATGGCGGTCGAGTTCGACGACCT
GCCCTGTCTGCACAAAATTCTCGGCCATGTGGTCGACGTGATGCAGCAGA
CCAAGCCAAACAGTCCTCATACGCAAATTTGCTACATCAAATTCCCCACC
GCTGGACTCCGGGTTACTTCACCCGAATTCCCACGTGCGTTTAGTGCGTC
ATTTGCCCGTCTCAAGGAGTACCGGAATAACCCCAACGTCGCCAAGGAGA
TCGTCAGCTGGCTACAGCCCCTTGAGAAGACAGAAGGCGTGGATGCCTCC
CTCCAAAAGGCGATTTCGGCCACTATCCGTAATGCGGAACGCACTGTACA
GGAAGCATAG back to topCoding sequence (CDS) from alignment at OGUI01000010.1:2412578..2413837- >ATCC64974_70430-T1 ID=ATCC64974_70430-T1|Name=ATCC64974_70430-T1|organism=Aspergillus niger N402|type=CDS|length=2364bp|location=Sequence derived from alignment at OGUI01000010.1:2412578..2413837- (Aspergillus niger N402)
GAGGAAATTACAGCCATCATCAAGAAACGGTCCGATTTTGAGCACAAGCT
GAATGCACGTGGCGCCCTGCCTGTTGACTTCGTCCGATATGCGCAATACG
AGATGAACCTAGACACCCTGCGCCGGAAGAGGGTGAAGCGGTTGGGAATC
AGATCGGCAGGATACACTGGGCAAAGGCGCATCTTCTTCATCCTTGACCG
CGCAACTCGCAAGTTTCATGGTGATGTGGGCTTGTGGGTGCAGTACCTCG
AATACGCGAAACAACAGAAAGCCTACAAAAAGGTCTCGACCATCCTTACG
GACGCCTTGCGGTTACATCCCGCCAACGTCGACTTGTGGCTATATGCTGC
GCAGTACTCTGTGGATGAGCATGCGGATATGACACAATCTAGGGGTTACA
TGCAGCGCGGTTTGCGCTTCTGCAAAAGCTCCAAGAAGCTGTGGCTCCAC
TATGCCAAACTGGAATTGATATATATCGCCAAGCTGGTTGCTCGACAGCG
GATCTTGGGTCTCGATAAGCCGATCGAAGCCCCGAAGCCAGCGCAGGAGG
ACGATTTAGATGCCGACATGATTGCTATGCCCAAGATCACTGGAGAAGAT
ATCAACCCCGGCGCTGGAGAGGATGGCGGTGTGGATCAAGTGGCTTTGGA
CAACCTTGCCAACACCCCAGCCCTGAGTGGTGCTATCCCTCTCGCCATCT
TCGATACGGCCATGAAGAACTTCGAAAATGACGACCGTTTCGGTCATGAG
TTCTACGATATGGCGGTCGAGTTCGACGACCTGCCCTGTCTGCACAAAAT
TCTCGGCCATGTGGTCGACGTGATGCAGCAGACCAAGCCAAACAGTCCTC
ATACGCAAATTTGCTACATCAAATTCCCCACCGCTGGACTCCGGGTTACT
TCACCCGAATTCCCACGTGCGTTTAGTGCGTCATTTGCCCGTCTCAAGGA
GTACCGGAATAACCCCAACGTCGCCAAGGAGATCGTCAGCTGGCTACAGC
CCCTTGAGAAGACAGAAGGCGTGGATGCCTCCCTCCAAAAGGCGATTTCG
GCCACTATCCGTAATGCGGAACGCACTGTACAGGAAGCATAGATGTCAGC
CGCTACCGATAAGGCACGCTTCTTTCTGGAGAAGTCGGTCCCTGAGCTCA
AGGAGTTTGAGCGGAAGAAAATCTTCTCCAAGGAGGAAATTACAGCCATC
ATCAAGAAACGGTCCGATTTTGAGCACAAGCTGAATGCACGTGGCGCCCT
GCCTGTTGACTTCGTCCGATATGCGCAATACGAGATGAACCTAGACACCC
TGCGCCGGAAGAGGGTGAAGCGGTTGGGAATCAGATCGGCAGGATACACT
GGGCAAAGGCGCATCTTCTTCATCCTTGACCGCGCAACTCGCAAGTTTCA
TGGTGATGTGGGCTTGTGGGTGCAGTACCTCGAATACGCGAAACAACAGA
AAGCCTACAAAAAGGTCTCGACCATCCTTACGGACGCCTTGCGGTTACAT
CCCGCCAACGTCGACTTGTGGCTATATGCTGCGCAGTACTCTGTGGATGA
GCATGCGGATATGACACAATCTAGGGGTTACATGCAGCGCGGTTTGCGCT
TCTGCAAAAGCTCCAAGAAGCTGTGGCTCCACTATGCCAAACTGGAATTG
ATATATATCGCCAAGCTGGTTGCTCGACAGCGGATCTTGGGTCTCGATAA
GCCGATCGAAGCCCCGAAGCCAGCGCAGGAGGACGATTTAGATGCCGACA
TGATTGCTATGCCCAAGATCACTGGAGAAGATATCAACCCCGGCGCTGGA
GAGGATGGCGGTGTGGATCAAGTGGCTTTGGACAACCTTGCCAACACCCC
AGCCCTGAGTGGTGCTATCCCTCTCGCCATCTTCGATACGGCCATGAAGA
ACTTCGAAAATGACGACCGTTTCGGTCATGAGTTCTACGATATGGCGGTC
GAGTTCGACGACCTGCCCTGTCTGCACAAAATTCTCGGCCATGTGGTCGA
CGTGATGCAGCAGACCAAGCCAAACAGTCCTCATACGCAAATTTGCTACA
TCAAATTCCCCACCGCTGGACTCCGGGTTACTTCACCCGAATTCCCACGT
GCGTTTAGTGCGTCATTTGCCCGTCTCAAGGAGTACCGGAATAACCCCAA
CGTCGCCAAGGAGATCGTCAGCTGGCTACAGCCCCTTGAGAAGACAGAAG
GCGTGGATGCCTCCCTCCAAAAGGCGATTTCGGCCACTATCCGTAATGCG
GAACGCACTGTACAGGAAGCATAGATGTCAGCCGCTACCGATAAGGCACG
CTTCTTTCTGGAGAAGTCGGTCCCTGAGCTCAAGGAGTTTGAGCGGAAGA
AAATCTTCTCCAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0030515 | snoRNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| GO:0006396 | RNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| ATCC64974_70430-T1 | ATCC64974_70430-T1-protein | Aspergillus niger N402 | polypeptide |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR011990 |
| DBxref | InterPro:IPR013949 |
| DBxref | InterPro:IPR003107 |
| DBxref | PFAM:PF08640 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| OGUI01000010.1 | supercontig | OGUI01000010.1:2412578..2413837 - |
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