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ATCC64974_7160-T1, ATCC64974_7160-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_7160-T1
Unique NameATCC64974_7160-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000001.1:2147645..2147970+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_7160-T1 ID=ATCC64974_7160-T1|Name=ATCC64974_7160-T1|organism=Aspergillus niger N402|type=mRNA|length=326bp|location=Sequence derived from alignment at OGUI01000001.1:2147645..2147970+ (Aspergillus niger N402)
ATGCCTCGTGCCGTCAGAGGTATCACAACCGCAGCACCGTCCAATCCCAA
CTATCGCTAACGAAGGCCTAAACAGGAGTCCTCATCGAGTGCGATCCGTC
CGTGAAAGCCATTATCCTCAAGTACGACGAAGAAAGACACGACTATATCG
TCGAAGACCTCGACGATGACCGTCATCTGGTCATCAAGGAGAGCCAGCTG
CAGAACCTGAAAGCGAGGTTGACAAAGGTAGGGATGCCGGAATGAGCTGT
TTGAGGCCTGACGCTGATGAGGCAACAGGAGCTTGACGATAAGGTTATGC
AGCCTGATGAGTCGGAATCGGAGTGA
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Coding sequence (CDS) from alignment at OGUI01000001.1:2147645..2147970+

>ATCC64974_7160-T1 ID=ATCC64974_7160-T1|Name=ATCC64974_7160-T1|organism=Aspergillus niger N402|type=CDS|length=657bp|location=Sequence derived from alignment at OGUI01000001.1:2147645..2147970+ (Aspergillus niger N402)
ATGCCTCGTGCCGTCAGAGGAGTCCTCATCGAGTGCGATCCGTCCGTGAA
AGCCATTATCCTCAAGTACGACGAAGAAAGACACGACTATATCGTCGAAG
ACCTCGACGATGACCGTCATCTGGTCATCAAGGAGAGCCAGCTGCAGAAC
CTGAAAGCGAGGTTGACAAAGGAGCTTGACGATAAGGTTATGCAGCCTGA
TGAGTCGGAATCGGAGTGAATGCCTCGTGCCGTCAGAGGAGTCCTCATCG
AGTGCGATCCGTCCGTGAAAGCCATTATCCTCAAGTACGACGAAGAAAGA
CACGACTATATCGTCGAAGACCTCGACGATGACCGTCATCTGGTCATCAA
GGAGAGCCAGCTGCAGAACCTGAAAGCGAGGTTGACAAAGGAGCTTGACG
ATAAGGTTATGCAGCCTGATGAGTCGGAATCGGAGTGAATGCCTCGTGCC
GTCAGAGGAGTCCTCATCGAGTGCGATCCGTCCGTGAAAGCCATTATCCT
CAAGTACGACGAAGAAAGACACGACTATATCGTCGAAGACCTCGACGATG
ACCGTCATCTGGTCATCAAGGAGAGCCAGCTGCAGAACCTGAAAGCGAGG
TTGACAAAGGAGCTTGACGATAAGGTTATGCAGCCTGATGAGTCGGAATC
GGAGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006289nucleotide-excision repair
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TFB5ATCC64974_7160Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_7160-T1.exon1ATCC64974_7160-T1.exon1Aspergillus niger N402exon
ATCC64974_7160-T1.exon2ATCC64974_7160-T1.exon2Aspergillus niger N402exon
ATCC64974_7160-T1.exon3ATCC64974_7160-T1.exon3Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_7160-T1.cdsATCC64974_7160-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_7160-T1ATCC64974_7160-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_10000011.8
DBxrefInterPro:IPR035935
DBxrefInterPro:IPR009400
DBxrefPFAM:PF06331
ProductTFIIH complex subunit tfb5
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000001.1supercontigOGUI01000001.1:2147645..2147970 +
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