You are here

Home

ATCC64974_74420-T1, ATCC64974_74420-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_74420-T1
Unique NameATCC64974_74420-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000013.1:210767..211823-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_74420-T1 ID=ATCC64974_74420-T1|Name=ATCC64974_74420-T1|organism=Aspergillus niger N402|type=mRNA|length=1057bp|location=Sequence derived from alignment at OGUI01000013.1:210767..211823- (Aspergillus niger N402)
ATGGCGCGCTTCAGAGCCAGCAATATTCTGGGCGACCCCTTTGCGCTCGC
AACCACGTCCATCTCCATTGTATGTCTTCAATTCGTCCTCGTGCGGTGGT
TAGGATCCGCTGCTAATCACCTTTTCTTCGTTTAGTTGGCTTGGTTGATC
GCATTTATCTCCTCCATTGTCACTGGCGTACATGGCGGATATCCCACCTA
TTCATGGTGGGCTGTTGCTTACTCATTTTGCTGCATTGTCGGCATGGCGC
TTGTCTTCGGCACCGATACTGGTGCCGTCTATAACATAGCGGTATGTTAC
CATCCCTCCTGAATCAATCTTTTGACAACCCTTCGTACTGATTTATGGCA
GATCGTGGGGTATCTTTCCGCTGGTCTTGTTATCACAACAATCTCCATCA
ACACGTTAGTCTATGCAAACAGCGCCGCATCGCAGGCTGCCGGTGCTGGG
TTCATTCTTTTGGCTATGGTTATTGTAAGTGATAACCAGCTCCGACACAC
ATACCCACTAGGCAGTACGTGACTTACCATTAATGCAGATCATTTGGATT
TTCTACTTCGGATCTAGCCCTCAGGCTTCGCATCGCGGCTTCATCGATTC
ATTTGCCCTCCAGAAGGAAGGTGCTGGCTCGTACGGAAATGGCAGACCTA
TGTCAACTGCATTCGGCAATCGACCCGAGACGACATCCAGCCAGCCCCCG
CAGATGTACACGTCCGCTCAACTCAACGGCTTCGAGACCTCTTCGCCCGT
GTCGGGTTATCCCGGAGGAGCCCCCGGCTCCGAACACCGCAGCTCCTCGC
AGCCCCGCTTCGGCAACCCGTCCGCTACGAATCTGCCCAACAATGGCGCA
CCAGATGAAGTCCCCCAGCCCACGGAATATCCGTACCGTGCGAAGGCGAT
CTATTCGTATGAGGCCAACCCTGAAGATGCCAATGAGATCAGTTTCACCA
AGCATGAGATCTTGGAGGTGTCCGATGTGAGCGGTAGATGGTGGCAGGCC
AGGAAGGCCACCGGAGAGACCGGTATTGCTCCATCCAACTACCTGATCTT
GCTGTGA
back to top

Coding sequence (CDS) from alignment at OGUI01000013.1:210767..211823-

>ATCC64974_74420-T1 ID=ATCC64974_74420-T1|Name=ATCC64974_74420-T1|organism=Aspergillus niger N402|type=CDS|length=3468bp|location=Sequence derived from alignment at OGUI01000013.1:210767..211823- (Aspergillus niger N402)
ATCATTTGGATTTTCTACTTCGGATCTAGCCCTCAGGCTTCGCATCGCGG
CTTCATCGATTCATTTGCCCTCCAGAAGGAAGGTGCTGGCTCGTACGGAA
ATGGCAGACCTATGTCAACTGCATTCGGCAATCGACCCGAGACGACATCC
AGCCAGCCCCCGCAGATGTACACGTCCGCTCAACTCAACGGCTTCGAGAC
CTCTTCGCCCGTGTCGGGTTATCCCGGAGGAGCCCCCGGCTCCGAACACC
GCAGCTCCTCGCAGCCCCGCTTCGGCAACCCGTCCGCTACGAATCTGCCC
AACAATGGCGCACCAGATGAAGTCCCCCAGCCCACGGAATATCCGTACCG
TGCGAAGGCGATCTATTCGTATGAGGCCAACCCTGAAGATGCCAATGAGA
TCAGTTTCACCAAGCATGAGATCTTGGAGGTGTCCGATGTGAGCGGTAGA
TGGTGGCAGGCCAGGAAGGCCACCGGAGAGACCGGTATTGCTCCATCCAA
CTACCTGATCTTGCTGTGAATCGTGGGGTATCTTTCCGCTGGTCTTGTTA
TCACAACAATCTCCATCAACACGTTAGTCTATGCAAACAGCGCCGCATCG
CAGGCTGCCGGTGCTGGGTTCATTCTTTTGGCTATGGTTATTTTGGCTTG
GTTGATCGCATTTATCTCCTCCATTGTCACTGGCGTACATGGCGGATATC
CCACCTATTCATGGTGGGCTGTTGCTTACTCATTTTGCTGCATTGTCGGC
ATGGCGCTTGTCTTCGGCACCGATACTGGTGCCGTCTATAACATAGCGAT
GGCGCGCTTCAGAGCCAGCAATATTCTGGGCGACCCCTTTGCGCTCGCAA
CCACGTCCATCTCCATTATCATTTGGATTTTCTACTTCGGATCTAGCCCT
CAGGCTTCGCATCGCGGCTTCATCGATTCATTTGCCCTCCAGAAGGAAGG
TGCTGGCTCGTACGGAAATGGCAGACCTATGTCAACTGCATTCGGCAATC
GACCCGAGACGACATCCAGCCAGCCCCCGCAGATGTACACGTCCGCTCAA
CTCAACGGCTTCGAGACCTCTTCGCCCGTGTCGGGTTATCCCGGAGGAGC
CCCCGGCTCCGAACACCGCAGCTCCTCGCAGCCCCGCTTCGGCAACCCGT
CCGCTACGAATCTGCCCAACAATGGCGCACCAGATGAAGTCCCCCAGCCC
ACGGAATATCCGTACCGTGCGAAGGCGATCTATTCGTATGAGGCCAACCC
TGAAGATGCCAATGAGATCAGTTTCACCAAGCATGAGATCTTGGAGGTGT
CCGATGTGAGCGGTAGATGGTGGCAGGCCAGGAAGGCCACCGGAGAGACC
GGTATTGCTCCATCCAACTACCTGATCTTGCTGTGAATCGTGGGGTATCT
TTCCGCTGGTCTTGTTATCACAACAATCTCCATCAACACGTTAGTCTATG
CAAACAGCGCCGCATCGCAGGCTGCCGGTGCTGGGTTCATTCTTTTGGCT
ATGGTTATTTTGGCTTGGTTGATCGCATTTATCTCCTCCATTGTCACTGG
CGTACATGGCGGATATCCCACCTATTCATGGTGGGCTGTTGCTTACTCAT
TTTGCTGCATTGTCGGCATGGCGCTTGTCTTCGGCACCGATACTGGTGCC
GTCTATAACATAGCGATGGCGCGCTTCAGAGCCAGCAATATTCTGGGCGA
CCCCTTTGCGCTCGCAACCACGTCCATCTCCATTATCATTTGGATTTTCT
ACTTCGGATCTAGCCCTCAGGCTTCGCATCGCGGCTTCATCGATTCATTT
GCCCTCCAGAAGGAAGGTGCTGGCTCGTACGGAAATGGCAGACCTATGTC
AACTGCATTCGGCAATCGACCCGAGACGACATCCAGCCAGCCCCCGCAGA
TGTACACGTCCGCTCAACTCAACGGCTTCGAGACCTCTTCGCCCGTGTCG
GGTTATCCCGGAGGAGCCCCCGGCTCCGAACACCGCAGCTCCTCGCAGCC
CCGCTTCGGCAACCCGTCCGCTACGAATCTGCCCAACAATGGCGCACCAG
ATGAAGTCCCCCAGCCCACGGAATATCCGTACCGTGCGAAGGCGATCTAT
TCGTATGAGGCCAACCCTGAAGATGCCAATGAGATCAGTTTCACCAAGCA
TGAGATCTTGGAGGTGTCCGATGTGAGCGGTAGATGGTGGCAGGCCAGGA
AGGCCACCGGAGAGACCGGTATTGCTCCATCCAACTACCTGATCTTGCTG
TGAATCGTGGGGTATCTTTCCGCTGGTCTTGTTATCACAACAATCTCCAT
CAACACGTTAGTCTATGCAAACAGCGCCGCATCGCAGGCTGCCGGTGCTG
GGTTCATTCTTTTGGCTATGGTTATTTTGGCTTGGTTGATCGCATTTATC
TCCTCCATTGTCACTGGCGTACATGGCGGATATCCCACCTATTCATGGTG
GGCTGTTGCTTACTCATTTTGCTGCATTGTCGGCATGGCGCTTGTCTTCG
GCACCGATACTGGTGCCGTCTATAACATAGCGATGGCGCGCTTCAGAGCC
AGCAATATTCTGGGCGACCCCTTTGCGCTCGCAACCACGTCCATCTCCAT
TATCATTTGGATTTTCTACTTCGGATCTAGCCCTCAGGCTTCGCATCGCG
GCTTCATCGATTCATTTGCCCTCCAGAAGGAAGGTGCTGGCTCGTACGGA
AATGGCAGACCTATGTCAACTGCATTCGGCAATCGACCCGAGACGACATC
CAGCCAGCCCCCGCAGATGTACACGTCCGCTCAACTCAACGGCTTCGAGA
CCTCTTCGCCCGTGTCGGGTTATCCCGGAGGAGCCCCCGGCTCCGAACAC
CGCAGCTCCTCGCAGCCCCGCTTCGGCAACCCGTCCGCTACGAATCTGCC
CAACAATGGCGCACCAGATGAAGTCCCCCAGCCCACGGAATATCCGTACC
GTGCGAAGGCGATCTATTCGTATGAGGCCAACCCTGAAGATGCCAATGAG
ATCAGTTTCACCAAGCATGAGATCTTGGAGGTGTCCGATGTGAGCGGTAG
ATGGTGGCAGGCCAGGAAGGCCACCGGAGAGACCGGTATTGCTCCATCCA
ACTACCTGATCTTGCTGTGAATCGTGGGGTATCTTTCCGCTGGTCTTGTT
ATCACAACAATCTCCATCAACACGTTAGTCTATGCAAACAGCGCCGCATC
GCAGGCTGCCGGTGCTGGGTTCATTCTTTTGGCTATGGTTATTTTGGCTT
GGTTGATCGCATTTATCTCCTCCATTGTCACTGGCGTACATGGCGGATAT
CCCACCTATTCATGGTGGGCTGTTGCTTACTCATTTTGCTGCATTGTCGG
CATGGCGCTTGTCTTCGGCACCGATACTGGTGCCGTCTATAACATAGCGA
TGGCGCGCTTCAGAGCCAGCAATATTCTGGGCGACCCCTTTGCGCTCGCA
ACCACGTCCATCTCCATT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SHO1ATCC64974_74420Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_74420-T1ATCC64974_74420-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_74420-T1.cdsATCC64974_74420-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_74420-T1.exon4ATCC64974_74420-T1.exon4Aspergillus niger N402exon
ATCC64974_74420-T1.exon3ATCC64974_74420-T1.exon3Aspergillus niger N402exon
ATCC64974_74420-T1.exon2ATCC64974_74420-T1.exon2Aspergillus niger N402exon
ATCC64974_74420-T1.exon1ATCC64974_74420-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
DBxrefInterPro:IPR036028
DBxrefInterPro:IPR035522
DBxrefInterPro:IPR001452
DBxrefPFAM:PF07653
DBxrefPFAM:PF00018
ProductTransmembrane osmosensor
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000013.1supercontigOGUI01000013.1:210767..211823 -
Powered by Drupal