You are here

Home

ATCC64974_7560-T1, ATCC64974_7560-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_7560-T1
Unique NameATCC64974_7560-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000002.1:50415..51332+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_7560-T1 ID=ATCC64974_7560-T1|Name=ATCC64974_7560-T1|organism=Aspergillus niger N402|type=mRNA|length=918bp|location=Sequence derived from alignment at OGUI01000002.1:50415..51332+ (Aspergillus niger N402)
ATGAATATCTTCAGGTTATTAGGTGAGTTGTTTGTTCGCTCTCAGTTCAA
TTGACGCACCATGCTAATTCTTACAAACAAGCCGACTTTTCCCATCTTGC
GTCTATATTCATATTATTGCAGAAGATGAAGTCTTCAAGTGTATGCTGTC
ATTAAAACGGATTCTTAGCATTTTTCTGACTGGATCCAGAGTTGCTCAGG
GCTTTCATTCAAGTCCCAGGCGCTATATTTGATGGTTTTTGTAACGCGTT
ATCTTGGTAAGCTTCAGGGATTCAATACTCGATTGTATAGGTCTAGCTCT
CTGACTGGTTTCTGATCACAGATTTATTCTGGGCTTTCACGGACTCTTTC
TATAATACGACTTTTAAAATCCTGTTCATCGGCTCGTCAGCTTATATCAT
CTACCTCATGCTCAACGACTATAAGCCAACGCATGACCCCAACACTGATA
CCTTTAAAGTGCAGTATCTCCTCGGGTTCAGTGCTTTGTTGGCTCTCCTT
TTCCCGCACGACTATAGCGTCTCAGAGGTAAACCCCCTGGCAGGACATTT
GTCACACCTCATCTGACCTTTCTAGATTCTTTGGACGTTCTCTATATGGC
TCGAGTCCGTGGCTATTTTGCCCCAGCTTTTCATGCTTCAGCGCACTGGG
GAGGCGGACACCATAACAACGCATTATCTTTTCGCTTTGGGATTGTATCG
TGCCCTTTACATCCCCAATTGGATTTATCGCTATTTCGCAGAGAGCCACT
TTCAGCCTATCCCTGTTGTAGCCGGTATCATCCAGACACTCTTATATTCT
GATTTCTTTTATATCTATTACACCAAGTGAGTCCCAGCAAGTTTCCTCTA
TCAGTACCCAGGGGCGCTAACTGTCATACAGGGTTATGAAGGGTAAGAAG
TTCTCATTGCCTGTTTAA
back to top

Coding sequence (CDS) from alignment at OGUI01000002.1:50415..51332+

>ATCC64974_7560-T1 ID=ATCC64974_7560-T1|Name=ATCC64974_7560-T1|organism=Aspergillus niger N402|type=CDS|length=3852bp|location=Sequence derived from alignment at OGUI01000002.1:50415..51332+ (Aspergillus niger N402)
ATGAATATCTTCAGGTTATTAGCCGACTTTTCCCATCTTGCGTCTATATT
CATATTATTGCAGAAGATGAAGTCTTCAAGTAGTTGCTCAGGGCTTTCAT
TCAAGTCCCAGGCGCTATATTTGATGGTTTTTGTAACGCGTTATCTTGAT
TTATTCTGGGCTTTCACGGACTCTTTCTATAATACGACTTTTAAAATCCT
GTTCATCGGCTCGTCAGCTTATATCATCTACCTCATGCTCAACGACTATA
AGCCAACGCATGACCCCAACACTGATACCTTTAAAGTGCAGTATCTCCTC
GGGTTCAGTGCTTTGTTGGCTCTCCTTTTCCCGCACGACTATAGCGTCTC
AGAGATTCTTTGGACGTTCTCTATATGGCTCGAGTCCGTGGCTATTTTGC
CCCAGCTTTTCATGCTTCAGCGCACTGGGGAGGCGGACACCATAACAACG
CATTATCTTTTCGCTTTGGGATTGTATCGTGCCCTTTACATCCCCAATTG
GATTTATCGCTATTTCGCAGAGAGCCACTTTCAGCCTATCCCTGTTGTAG
CCGGTATCATCCAGACACTCTTATATTCTGATTTCTTTTATATCTATTAC
ACCAAGGTTATGAAGGGTAAGAAGTTCTCATTGCCTGTTTAAATGAATAT
CTTCAGGTTATTAGCCGACTTTTCCCATCTTGCGTCTATATTCATATTAT
TGCAGAAGATGAAGTCTTCAAGTAGTTGCTCAGGGCTTTCATTCAAGTCC
CAGGCGCTATATTTGATGGTTTTTGTAACGCGTTATCTTGATTTATTCTG
GGCTTTCACGGACTCTTTCTATAATACGACTTTTAAAATCCTGTTCATCG
GCTCGTCAGCTTATATCATCTACCTCATGCTCAACGACTATAAGCCAACG
CATGACCCCAACACTGATACCTTTAAAGTGCAGTATCTCCTCGGGTTCAG
TGCTTTGTTGGCTCTCCTTTTCCCGCACGACTATAGCGTCTCAGAGATTC
TTTGGACGTTCTCTATATGGCTCGAGTCCGTGGCTATTTTGCCCCAGCTT
TTCATGCTTCAGCGCACTGGGGAGGCGGACACCATAACAACGCATTATCT
TTTCGCTTTGGGATTGTATCGTGCCCTTTACATCCCCAATTGGATTTATC
GCTATTTCGCAGAGAGCCACTTTCAGCCTATCCCTGTTGTAGCCGGTATC
ATCCAGACACTCTTATATTCTGATTTCTTTTATATCTATTACACCAAGGT
TATGAAGGGTAAGAAGTTCTCATTGCCTGTTTAAATGAATATCTTCAGGT
TATTAGCCGACTTTTCCCATCTTGCGTCTATATTCATATTATTGCAGAAG
ATGAAGTCTTCAAGTAGTTGCTCAGGGCTTTCATTCAAGTCCCAGGCGCT
ATATTTGATGGTTTTTGTAACGCGTTATCTTGATTTATTCTGGGCTTTCA
CGGACTCTTTCTATAATACGACTTTTAAAATCCTGTTCATCGGCTCGTCA
GCTTATATCATCTACCTCATGCTCAACGACTATAAGCCAACGCATGACCC
CAACACTGATACCTTTAAAGTGCAGTATCTCCTCGGGTTCAGTGCTTTGT
TGGCTCTCCTTTTCCCGCACGACTATAGCGTCTCAGAGATTCTTTGGACG
TTCTCTATATGGCTCGAGTCCGTGGCTATTTTGCCCCAGCTTTTCATGCT
TCAGCGCACTGGGGAGGCGGACACCATAACAACGCATTATCTTTTCGCTT
TGGGATTGTATCGTGCCCTTTACATCCCCAATTGGATTTATCGCTATTTC
GCAGAGAGCCACTTTCAGCCTATCCCTGTTGTAGCCGGTATCATCCAGAC
ACTCTTATATTCTGATTTCTTTTATATCTATTACACCAAGGTTATGAAGG
GTAAGAAGTTCTCATTGCCTGTTTAAATGAATATCTTCAGGTTATTAGCC
GACTTTTCCCATCTTGCGTCTATATTCATATTATTGCAGAAGATGAAGTC
TTCAAGTAGTTGCTCAGGGCTTTCATTCAAGTCCCAGGCGCTATATTTGA
TGGTTTTTGTAACGCGTTATCTTGATTTATTCTGGGCTTTCACGGACTCT
TTCTATAATACGACTTTTAAAATCCTGTTCATCGGCTCGTCAGCTTATAT
CATCTACCTCATGCTCAACGACTATAAGCCAACGCATGACCCCAACACTG
ATACCTTTAAAGTGCAGTATCTCCTCGGGTTCAGTGCTTTGTTGGCTCTC
CTTTTCCCGCACGACTATAGCGTCTCAGAGATTCTTTGGACGTTCTCTAT
ATGGCTCGAGTCCGTGGCTATTTTGCCCCAGCTTTTCATGCTTCAGCGCA
CTGGGGAGGCGGACACCATAACAACGCATTATCTTTTCGCTTTGGGATTG
TATCGTGCCCTTTACATCCCCAATTGGATTTATCGCTATTTCGCAGAGAG
CCACTTTCAGCCTATCCCTGTTGTAGCCGGTATCATCCAGACACTCTTAT
ATTCTGATTTCTTTTATATCTATTACACCAAGGTTATGAAGGGTAAGAAG
TTCTCATTGCCTGTTTAAATGAATATCTTCAGGTTATTAGCCGACTTTTC
CCATCTTGCGTCTATATTCATATTATTGCAGAAGATGAAGTCTTCAAGTA
GTTGCTCAGGGCTTTCATTCAAGTCCCAGGCGCTATATTTGATGGTTTTT
GTAACGCGTTATCTTGATTTATTCTGGGCTTTCACGGACTCTTTCTATAA
TACGACTTTTAAAATCCTGTTCATCGGCTCGTCAGCTTATATCATCTACC
TCATGCTCAACGACTATAAGCCAACGCATGACCCCAACACTGATACCTTT
AAAGTGCAGTATCTCCTCGGGTTCAGTGCTTTGTTGGCTCTCCTTTTCCC
GCACGACTATAGCGTCTCAGAGATTCTTTGGACGTTCTCTATATGGCTCG
AGTCCGTGGCTATTTTGCCCCAGCTTTTCATGCTTCAGCGCACTGGGGAG
GCGGACACCATAACAACGCATTATCTTTTCGCTTTGGGATTGTATCGTGC
CCTTTACATCCCCAATTGGATTTATCGCTATTTCGCAGAGAGCCACTTTC
AGCCTATCCCTGTTGTAGCCGGTATCATCCAGACACTCTTATATTCTGAT
TTCTTTTATATCTATTACACCAAGGTTATGAAGGGTAAGAAGTTCTCATT
GCCTGTTTAAATGAATATCTTCAGGTTATTAGCCGACTTTTCCCATCTTG
CGTCTATATTCATATTATTGCAGAAGATGAAGTCTTCAAGTAGTTGCTCA
GGGCTTTCATTCAAGTCCCAGGCGCTATATTTGATGGTTTTTGTAACGCG
TTATCTTGATTTATTCTGGGCTTTCACGGACTCTTTCTATAATACGACTT
TTAAAATCCTGTTCATCGGCTCGTCAGCTTATATCATCTACCTCATGCTC
AACGACTATAAGCCAACGCATGACCCCAACACTGATACCTTTAAAGTGCA
GTATCTCCTCGGGTTCAGTGCTTTGTTGGCTCTCCTTTTCCCGCACGACT
ATAGCGTCTCAGAGATTCTTTGGACGTTCTCTATATGGCTCGAGTCCGTG
GCTATTTTGCCCCAGCTTTTCATGCTTCAGCGCACTGGGGAGGCGGACAC
CATAACAACGCATTATCTTTTCGCTTTGGGATTGTATCGTGCCCTTTACA
TCCCCAATTGGATTTATCGCTATTTCGCAGAGAGCCACTTTCAGCCTATC
CCTGTTGTAGCCGGTATCATCCAGACACTCTTATATTCTGATTTCTTTTA
TATCTATTACACCAAGGTTATGAAGGGTAAGAAGTTCTCATTGCCTGTTT
AA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0046923ER retention sequence binding
Vocabulary: Biological Process
TermDefinition
GO:0006621protein retention in ER lumen
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KDELR2ATCC64974_7560Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_7560-T1ATCC64974_7560-T1-proteinAspergillus niger N402polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_7560-T1.exon1ATCC64974_7560-T1.exon1Aspergillus niger N402exon
ATCC64974_7560-T1.exon2ATCC64974_7560-T1.exon2Aspergillus niger N402exon
ATCC64974_7560-T1.exon3ATCC64974_7560-T1.exon3Aspergillus niger N402exon
ATCC64974_7560-T1.exon4ATCC64974_7560-T1.exon4Aspergillus niger N402exon
ATCC64974_7560-T1.exon5ATCC64974_7560-T1.exon5Aspergillus niger N402exon
ATCC64974_7560-T1.exon6ATCC64974_7560-T1.exon6Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_7560-T1.cdsATCC64974_7560-T1.cdsAspergillus niger N402CDS


Properties
Property NameValue
DBxrefInterPro:IPR000133
DBxrefPFAM:PF00810
ProductER lumen protein-retaining receptor 2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000002.1supercontigOGUI01000002.1:50415..51332 +
Powered by Drupal