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ATCC64974_78280-T1, ATCC64974_78280-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_78280-T1
Unique NameATCC64974_78280-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000013.1:1516943..1517548+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_78280-T1 ID=ATCC64974_78280-T1|Name=ATCC64974_78280-T1|organism=Aspergillus niger N402|type=mRNA|length=606bp|location=Sequence derived from alignment at OGUI01000013.1:1516943..1517548+ (Aspergillus niger N402)
ATGCCTCAGGAAATCTCCGACATCAAGCAGTTCATCGAGGTCTGCCGCCG
CAAGGATGCGTCCTGTACGTTTACCCGACCTTTAGCCGCTTAGTTATCAT
GAGGTGGAAAGCTCCGCGGAGCTAGCTCTTTGAGGGGGAAGCTCGAGACG
GGTACCCGACTATCATCAAAAGGGCAAATTGGAATGGTTGATCGGGATGG
ATGAATGATAAGAAGTGGAGGCTAACGCGTGATGGTCTTGTCTTTCAAAC
AGCTGCTCGCATCAAGCGCAACCCCAAGGACCAGCAGATCAAGTTCAAGG
TCCGCTGCTCCCGCTTCGTCTACACCCTTGTCCTGAAGGACTCCGACAAG
GCCGACAAGCTCAAGCAGAGCCTGCCCCCTGGTGCGTTTGCTCCCGTCAC
CTGATCGACTGTTTCTTTGGATGGTGTTATGGAACAAGATACATGTCGTC
GGACGCGTTTGTTTCCTTACGACTTGAGATGGGCATTGATGTGGACCTCG
GCTATTGCATGACATCATTCGGATTGAGTACTAACATCAATTGTTTTCTC
ACACAGCTCTCAAGGTTGTCGACGTCTCCAAGGGAGACAAGAAGAAGGCT
CTGTAA
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Coding sequence (CDS) from alignment at OGUI01000013.1:1516943..1517548+

>ATCC64974_78280-T1 ID=ATCC64974_78280-T1|Name=ATCC64974_78280-T1|organism=Aspergillus niger N402|type=CDS|length=729bp|location=Sequence derived from alignment at OGUI01000013.1:1516943..1517548+ (Aspergillus niger N402)
ATGCCTCAGGAAATCTCCGACATCAAGCAGTTCATCGAGGTCTGCCGCCG
CAAGGATGCGTCCTCTGCTCGCATCAAGCGCAACCCCAAGGACCAGCAGA
TCAAGTTCAAGGTCCGCTGCTCCCGCTTCGTCTACACCCTTGTCCTGAAG
GACTCCGACAAGGCCGACAAGCTCAAGCAGAGCCTGCCCCCTGCTCTCAA
GGTTGTCGACGTCTCCAAGGGAGACAAGAAGAAGGCTCTGTAAATGCCTC
AGGAAATCTCCGACATCAAGCAGTTCATCGAGGTCTGCCGCCGCAAGGAT
GCGTCCTCTGCTCGCATCAAGCGCAACCCCAAGGACCAGCAGATCAAGTT
CAAGGTCCGCTGCTCCCGCTTCGTCTACACCCTTGTCCTGAAGGACTCCG
ACAAGGCCGACAAGCTCAAGCAGAGCCTGCCCCCTGCTCTCAAGGTTGTC
GACGTCTCCAAGGGAGACAAGAAGAAGGCTCTGTAAATGCCTCAGGAAAT
CTCCGACATCAAGCAGTTCATCGAGGTCTGCCGCCGCAAGGATGCGTCCT
CTGCTCGCATCAAGCGCAACCCCAAGGACCAGCAGATCAAGTTCAAGGTC
CGCTGCTCCCGCTTCGTCTACACCCTTGTCCTGAAGGACTCCGACAAGGC
CGACAAGCTCAAGCAGAGCCTGCCCCCTGCTCTCAAGGTTGTCGACGTCT
CCAAGGGAGACAAGAAGAAGGCTCTGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL38ATCC64974_78280Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_78280-T1.exon1ATCC64974_78280-T1.exon1Aspergillus niger N402exon
ATCC64974_78280-T1.exon2ATCC64974_78280-T1.exon2Aspergillus niger N402exon
ATCC64974_78280-T1.exon3ATCC64974_78280-T1.exon3Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_78280-T1.cdsATCC64974_78280-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_78280-T1ATCC64974_78280-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09265OQH
DBxrefInterPro:IPR002675
DBxrefInterPro:IPR038464
DBxrefPFAM:PF01781
Product60S ribosomal protein L38
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000013.1supercontigOGUI01000013.1:1516943..1517548 +
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