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ATCC64974_8040-T1, ATCC64974_8040-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_8040-T1
Unique NameATCC64974_8040-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000002.1:211086..212739-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_8040-T1 ID=ATCC64974_8040-T1|Name=ATCC64974_8040-T1|organism=Aspergillus niger N402|type=mRNA|length=1654bp|location=Sequence derived from alignment at OGUI01000002.1:211086..212739- (Aspergillus niger N402)
ATGGTCCTTCAGGATCTCGGGCGGCGAATCAACGCCGCCGTCAATGACCT
GACTCGCTCTAACAATTTGGACGAGAAGGTGAGGATCAGCACTTTTCTCT
CTGTCTGATGTATGTACTGACTGTTAGCAGGCCTTTGATGACATGATCAA
AGAGATCTGCGCCGCCTTGCTGTCCGCCGACGTCAACGTCCGCCTGGTCC
AGTCCCTCCGCAAATCCATCAAGTCCAGCGTCAACTTTGCCTCTCTTCCT
CCCGCCGTGAACAAGAAGCGTTTGATTCAGAAGGCCGTCTTCGATGAGCT
GGTTTCCCTGGTTGATCCCCATGCGGAGCCATTCCGTCCCAAGAAGGGCC
GCTCCAACGTGATCATGTTCGTCGGTCTACAGGGTGCCGGTAAAACCACC
ACCTGTACCAAGCTGGCCCGCCACTATCAGATGCGCGGCTTCAAGACCGC
CCTTGTCTGTGCCGATACCTTCCGAGCTGGTGCTTTCGACCAGCTGAAAC
AGAATGCCACCAAGGCCAAGATCCCCTACTACGGTAGCCTGACGCAAACC
GACCCCGCCATCGTGGCAGCCGAGGGTGTGGCCAAGTTCAAGAAGGAGCG
TTTCGAAATCATCATTGTCGATACCAGTGGTCGTCATAAGCAGGAAGAAG
AGCTCTTCACCGAAATGACCCAGATTCAGACCGCCGTCACCCCCGACCAG
ACCATCCTCGTCCTCGACAGCACCATCGGTCAGGCTGCCGAAGCCCAGTC
CTCCGCCTTCAAGGCCACCGCAGACTTCGGAGCCATCATCATCACCAAGA
CGGATGGTCACGCCGCAGGTGGTGGTGCTATTTCCGCCGTCGCCGCCACA
CACACTCCCATTATCTACCTCGGTACCGGTGAGCACTTGATGGACCTGGA
ACGTTTCGAGCCCAAGGCCTTCATCCAGAAGCTCCTGGGTATGGGTGATA
TGGCCGGACTGGTAGAGCACGTACAAGCCGTGACCAAGGACTCGGCCTCC
GCCAAGGAAACATACAAGCACATCTCAGAAGGTATCTACACGCTGCGCGA
CTTCCGCGAGAACATCACCTCCATCATGAAGATGGGTCCTCTCTCCAAGC
TCTCCGGCATGATTCCCGGTCTCTCCAACCTGACCGCGGGACTTGATGAC
GAAGACGGCTCCATGAAGCTCCGCCGCATGATCTACATTTTCGACAGCAT
GACGGCCGCCGAACTCGACGGCGACGGCAAGATGTTCGTCGAACAGCCTA
GCCGCATGGTCCGGATCGCTTGCGGAAGCGGTACCACCGTCCGCGAAGTC
GAAGACCTGCTCTCCCAGCACCGCATGATGGCTGGTATGGCCAAGCGCGT
CGGCGGACAGAAGAAGCAGATGCAGCGTGCCCAGAACATGCTCAAGGGCG
GTAACAAGGAACAGCAGCTCGCCGCCATGCAGAAGCGCATGGCCGCCATG
GGTGGTGCTGGCGGTGGTGGATTCCCCGGTATGCCCGGCATGGGCGACAT
GGCCAAGATGATGCAAATGCTGCAAGGTCAAGGAGGTGGCGGCGGTGGTG
GTCTTCCCGGCCTGGGTGGGATGGACCTACAAAGTATGATGAGCCAGATG
AGTGGATTGATGGGCGGTGGCGGTGGTGGTGGTGGCCGCGGTAGAGGACG
GTGA
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Coding sequence (CDS) from alignment at OGUI01000002.1:211086..212739-

>ATCC64974_8040-T1 ID=ATCC64974_8040-T1|Name=ATCC64974_8040-T1|organism=Aspergillus niger N402|type=CDS|length=3204bp|location=Sequence derived from alignment at OGUI01000002.1:211086..212739- (Aspergillus niger N402)
GCCTTTGATGACATGATCAAAGAGATCTGCGCCGCCTTGCTGTCCGCCGA
CGTCAACGTCCGCCTGGTCCAGTCCCTCCGCAAATCCATCAAGTCCAGCG
TCAACTTTGCCTCTCTTCCTCCCGCCGTGAACAAGAAGCGTTTGATTCAG
AAGGCCGTCTTCGATGAGCTGGTTTCCCTGGTTGATCCCCATGCGGAGCC
ATTCCGTCCCAAGAAGGGCCGCTCCAACGTGATCATGTTCGTCGGTCTAC
AGGGTGCCGGTAAAACCACCACCTGTACCAAGCTGGCCCGCCACTATCAG
ATGCGCGGCTTCAAGACCGCCCTTGTCTGTGCCGATACCTTCCGAGCTGG
TGCTTTCGACCAGCTGAAACAGAATGCCACCAAGGCCAAGATCCCCTACT
ACGGTAGCCTGACGCAAACCGACCCCGCCATCGTGGCAGCCGAGGGTGTG
GCCAAGTTCAAGAAGGAGCGTTTCGAAATCATCATTGTCGATACCAGTGG
TCGTCATAAGCAGGAAGAAGAGCTCTTCACCGAAATGACCCAGATTCAGA
CCGCCGTCACCCCCGACCAGACCATCCTCGTCCTCGACAGCACCATCGGT
CAGGCTGCCGAAGCCCAGTCCTCCGCCTTCAAGGCCACCGCAGACTTCGG
AGCCATCATCATCACCAAGACGGATGGTCACGCCGCAGGTGGTGGTGCTA
TTTCCGCCGTCGCCGCCACACACACTCCCATTATCTACCTCGGTACCGGT
GAGCACTTGATGGACCTGGAACGTTTCGAGCCCAAGGCCTTCATCCAGAA
GCTCCTGGGTATGGGTGATATGGCCGGACTGGTAGAGCACGTACAAGCCG
TGACCAAGGACTCGGCCTCCGCCAAGGAAACATACAAGCACATCTCAGAA
GGTATCTACACGCTGCGCGACTTCCGCGAGAACATCACCTCCATCATGAA
GATGGGTCCTCTCTCCAAGCTCTCCGGCATGATTCCCGGTCTCTCCAACC
TGACCGCGGGACTTGATGACGAAGACGGCTCCATGAAGCTCCGCCGCATG
ATCTACATTTTCGACAGCATGACGGCCGCCGAACTCGACGGCGACGGCAA
GATGTTCGTCGAACAGCCTAGCCGCATGGTCCGGATCGCTTGCGGAAGCG
GTACCACCGTCCGCGAAGTCGAAGACCTGCTCTCCCAGCACCGCATGATG
GCTGGTATGGCCAAGCGCGTCGGCGGACAGAAGAAGCAGATGCAGCGTGC
CCAGAACATGCTCAAGGGCGGTAACAAGGAACAGCAGCTCGCCGCCATGC
AGAAGCGCATGGCCGCCATGGGTGGTGCTGGCGGTGGTGGATTCCCCGGT
ATGCCCGGCATGGGCGACATGGCCAAGATGATGCAAATGCTGCAAGGTCA
AGGAGGTGGCGGCGGTGGTGGTCTTCCCGGCCTGGGTGGGATGGACCTAC
AAAGTATGATGAGCCAGATGAGTGGATTGATGGGCGGTGGCGGTGGTGGT
GGTGGCCGCGGTAGAGGACGGTGAATGGTCCTTCAGGATCTCGGGCGGCG
AATCAACGCCGCCGTCAATGACCTGACTCGCTCTAACAATTTGGACGAGA
AGGCCTTTGATGACATGATCAAAGAGATCTGCGCCGCCTTGCTGTCCGCC
GACGTCAACGTCCGCCTGGTCCAGTCCCTCCGCAAATCCATCAAGTCCAG
CGTCAACTTTGCCTCTCTTCCTCCCGCCGTGAACAAGAAGCGTTTGATTC
AGAAGGCCGTCTTCGATGAGCTGGTTTCCCTGGTTGATCCCCATGCGGAG
CCATTCCGTCCCAAGAAGGGCCGCTCCAACGTGATCATGTTCGTCGGTCT
ACAGGGTGCCGGTAAAACCACCACCTGTACCAAGCTGGCCCGCCACTATC
AGATGCGCGGCTTCAAGACCGCCCTTGTCTGTGCCGATACCTTCCGAGCT
GGTGCTTTCGACCAGCTGAAACAGAATGCCACCAAGGCCAAGATCCCCTA
CTACGGTAGCCTGACGCAAACCGACCCCGCCATCGTGGCAGCCGAGGGTG
TGGCCAAGTTCAAGAAGGAGCGTTTCGAAATCATCATTGTCGATACCAGT
GGTCGTCATAAGCAGGAAGAAGAGCTCTTCACCGAAATGACCCAGATTCA
GACCGCCGTCACCCCCGACCAGACCATCCTCGTCCTCGACAGCACCATCG
GTCAGGCTGCCGAAGCCCAGTCCTCCGCCTTCAAGGCCACCGCAGACTTC
GGAGCCATCATCATCACCAAGACGGATGGTCACGCCGCAGGTGGTGGTGC
TATTTCCGCCGTCGCCGCCACACACACTCCCATTATCTACCTCGGTACCG
GTGAGCACTTGATGGACCTGGAACGTTTCGAGCCCAAGGCCTTCATCCAG
AAGCTCCTGGGTATGGGTGATATGGCCGGACTGGTAGAGCACGTACAAGC
CGTGACCAAGGACTCGGCCTCCGCCAAGGAAACATACAAGCACATCTCAG
AAGGTATCTACACGCTGCGCGACTTCCGCGAGAACATCACCTCCATCATG
AAGATGGGTCCTCTCTCCAAGCTCTCCGGCATGATTCCCGGTCTCTCCAA
CCTGACCGCGGGACTTGATGACGAAGACGGCTCCATGAAGCTCCGCCGCA
TGATCTACATTTTCGACAGCATGACGGCCGCCGAACTCGACGGCGACGGC
AAGATGTTCGTCGAACAGCCTAGCCGCATGGTCCGGATCGCTTGCGGAAG
CGGTACCACCGTCCGCGAAGTCGAAGACCTGCTCTCCCAGCACCGCATGA
TGGCTGGTATGGCCAAGCGCGTCGGCGGACAGAAGAAGCAGATGCAGCGT
GCCCAGAACATGCTCAAGGGCGGTAACAAGGAACAGCAGCTCGCCGCCAT
GCAGAAGCGCATGGCCGCCATGGGTGGTGCTGGCGGTGGTGGATTCCCCG
GTATGCCCGGCATGGGCGACATGGCCAAGATGATGCAAATGCTGCAAGGT
CAAGGAGGTGGCGGCGGTGGTGGTCTTCCCGGCCTGGGTGGGATGGACCT
ACAAAGTATGATGAGCCAGATGAGTGGATTGATGGGCGGTGGCGGTGGTG
GTGGTGGCCGCGGTAGAGGACGGTGAATGGTCCTTCAGGATCTCGGGCGG
CGAATCAACGCCGCCGTCAATGACCTGACTCGCTCTAACAATTTGGACGA
GAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
Vocabulary: Molecular Function
TermDefinition
GO:00083127S RNA binding
GO:0003924GTPase activity
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC64974_8040ATCC64974_8040Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_8040-T1ATCC64974_8040-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_8040-T1.cdsATCC64974_8040-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_8040-T1.exon2ATCC64974_8040-T1.exon2Aspergillus niger N402exon
ATCC64974_8040-T1.exon1ATCC64974_8040-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG09261V9P
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR036225
DBxrefInterPro:IPR022941
DBxrefInterPro:IPR036891
DBxrefInterPro:IPR004125
DBxrefInterPro:IPR006325
DBxrefInterPro:IPR042101
DBxrefInterPro:IPR003593
DBxrefInterPro:IPR000897
DBxrefInterPro:IPR013822
DBxrefPFAM:PF02978
DBxrefPFAM:PF02881
DBxrefPFAM:PF00448
DBxrefPFAM:PF02492
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000002.1supercontigOGUI01000002.1:211086..212739 -
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