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Sequences
The following sequences are available for this feature:
mRNA from alignment at OGUI01000002.1:315476..316811- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC64974_8480-T1 ID=ATCC64974_8480-T1|Name=ATCC64974_8480-T1|organism=Aspergillus niger N402|type=mRNA|length=1336bp|location=Sequence derived from alignment at OGUI01000002.1:315476..316811- (Aspergillus niger N402)
ATGGATGATGCAGAGGTTGATCATACTAAACCAATCCCGGCCTACTACTG
CTGTTATCTGCTGCGCTCGACCAAACAGCGCACCTCCCTGTATATTGGCT
CCACTCCACACCCTGCCAGGCGACTTGCGCAGCACAATGGGGAGTCTAAA
GGTGGCGCTCGCAAAACAGCCAAGGATGACAAAAGACCGTGGGAGATGGT
CTTGCTCGTTGAGGGCTTTACGAGCCGCGTTGGCGCGTTGCAATTCGAGT
AAGCATCTATGAACACATTATCGCGCTCTTATTACGCTGTAGATCTGATA
GCATTGTAGGTGGGCATGGCAGAACCCAAAGATGTCTTCGCAGCACCCGG
CAAATCGCCACCAGTTCGACCTAGAAACTGGCGATGTGGCAGGCACCTCA
GGGGTTCAGCCCAGTACCGAGGCCGGCAAGGCCAAGCATCGAGGTCGTGG
CTCCCGGAGATCATTGAAGGCCCATTTAGAAGATTTGCATCTTTTCTTAC
GTTCGACCTATTTTTCGAAATGGCCACTGAGGTTACGATTCTTCAACAGA
GACGTCTACCAATTGTGGACGACTTGGTGCGACCGCGTTGATGCCTTGCT
TCCCGAGCATGTCCGGACCATTTTAGATGGGGACTGTCCTAAGGACCACC
TGTCATGGGCTGACGAGCCGAGAGTCGGAAGCGTTGAACATATCAAGGTC
GATTACAGTGATATCTATGACTACGTAGAGAAGTCCCATTTCTTGCTGGA
TGATCCCAGCGATTTGCATTGCAAAATATGTCAAGCAAAGATCGTTCTCA
GTGAAGAACTGGCTCTAGTCTGCCCCCGGGCGAGCTGCTACTGCATCAGC
CATCTATTGTGTCTGTCATCCAGGTTTCTGGACCACGCCGAGGAGCCCGA
GCAGCTCGTTCCGATTGATGGAATTTGTCCTCTATGTAATAAGGTCATCC
AATGGTCAACAATGATGCAGGAACTGAGCCTCAGAACTCGAGGACATAAT
GAGTTTCGTGCCATTCTGCGCAAGGCAAAACGAGGCCGTGCAAAGGCGCA
TGGTTCTGTCCATGAAGCAAGCGCCCCTGATGGAGTAGCCAGCGCCGTCG
AAAACCCAGGCAGCCGAGCTGCTTGCGTCGAGAGTGCGTCAGTTGGCGTC
AGCGATAGTCTCGATGTGGATAATCATGACGACGCCAGTTTGGATGAGAA
TTGGACGGAGTCGTTGGATCTGGATCCGAATCCCGATGAACTCTTGAACC
GCCCAAAGGATCATAAGATGGAGTCGTCTAGGGTGGAAATCATCATAGAC
GACAGTGACTGCGAAGAGATGGAGGATTTGGGATGA back to topCoding sequence (CDS) from alignment at OGUI01000002.1:315476..316811- >ATCC64974_8480-T1 ID=ATCC64974_8480-T1|Name=ATCC64974_8480-T1|organism=Aspergillus niger N402|type=CDS|length=2550bp|location=Sequence derived from alignment at OGUI01000002.1:315476..316811- (Aspergillus niger N402)
GTGGGCATGGCAGAACCCAAAGATGTCTTCGCAGCACCCGGCAAATCGCC
ACCAGTTCGACCTAGAAACTGGCGATGTGGCAGGCACCTCAGGGGTTCAG
CCCAGTACCGAGGCCGGCAAGGCCAAGCATCGAGGTCGTGGCTCCCGGAG
ATCATTGAAGGCCCATTTAGAAGATTTGCATCTTTTCTTACGTTCGACCT
ATTTTTCGAAATGGCCACTGAGGTTACGATTCTTCAACAGAGACGTCTAC
CAATTGTGGACGACTTGGTGCGACCGCGTTGATGCCTTGCTTCCCGAGCA
TGTCCGGACCATTTTAGATGGGGACTGTCCTAAGGACCACCTGTCATGGG
CTGACGAGCCGAGAGTCGGAAGCGTTGAACATATCAAGGTCGATTACAGT
GATATCTATGACTACGTAGAGAAGTCCCATTTCTTGCTGGATGATCCCAG
CGATTTGCATTGCAAAATATGTCAAGCAAAGATCGTTCTCAGTGAAGAAC
TGGCTCTAGTCTGCCCCCGGGCGAGCTGCTACTGCATCAGCCATCTATTG
TGTCTGTCATCCAGGTTTCTGGACCACGCCGAGGAGCCCGAGCAGCTCGT
TCCGATTGATGGAATTTGTCCTCTATGTAATAAGGTCATCCAATGGTCAA
CAATGATGCAGGAACTGAGCCTCAGAACTCGAGGACATAATGAGTTTCGT
GCCATTCTGCGCAAGGCAAAACGAGGCCGTGCAAAGGCGCATGGTTCTGT
CCATGAAGCAAGCGCCCCTGATGGAGTAGCCAGCGCCGTCGAAAACCCAG
GCAGCCGAGCTGCTTGCGTCGAGAGTGCGTCAGTTGGCGTCAGCGATAGT
CTCGATGTGGATAATCATGACGACGCCAGTTTGGATGAGAATTGGACGGA
GTCGTTGGATCTGGATCCGAATCCCGATGAACTCTTGAACCGCCCAAAGG
ATCATAAGATGGAGTCGTCTAGGGTGGAAATCATCATAGACGACAGTGAC
TGCGAAGAGATGGAGGATTTGGGATGAATGGATGATGCAGAGGTTGATCA
TACTAAACCAATCCCGGCCTACTACTGCTGTTATCTGCTGCGCTCGACCA
AACAGCGCACCTCCCTGTATATTGGCTCCACTCCACACCCTGCCAGGCGA
CTTGCGCAGCACAATGGGGAGTCTAAAGGTGGCGCTCGCAAAACAGCCAA
GGATGACAAAAGACCGTGGGAGATGGTCTTGCTCGTTGAGGGCTTTACGA
GCCGCGTTGGCGCGTTGCAATTCGAGTGGGCATGGCAGAACCCAAAGATG
TCTTCGCAGCACCCGGCAAATCGCCACCAGTTCGACCTAGAAACTGGCGA
TGTGGCAGGCACCTCAGGGGTTCAGCCCAGTACCGAGGCCGGCAAGGCCA
AGCATCGAGGTCGTGGCTCCCGGAGATCATTGAAGGCCCATTTAGAAGAT
TTGCATCTTTTCTTACGTTCGACCTATTTTTCGAAATGGCCACTGAGGTT
ACGATTCTTCAACAGAGACGTCTACCAATTGTGGACGACTTGGTGCGACC
GCGTTGATGCCTTGCTTCCCGAGCATGTCCGGACCATTTTAGATGGGGAC
TGTCCTAAGGACCACCTGTCATGGGCTGACGAGCCGAGAGTCGGAAGCGT
TGAACATATCAAGGTCGATTACAGTGATATCTATGACTACGTAGAGAAGT
CCCATTTCTTGCTGGATGATCCCAGCGATTTGCATTGCAAAATATGTCAA
GCAAAGATCGTTCTCAGTGAAGAACTGGCTCTAGTCTGCCCCCGGGCGAG
CTGCTACTGCATCAGCCATCTATTGTGTCTGTCATCCAGGTTTCTGGACC
ACGCCGAGGAGCCCGAGCAGCTCGTTCCGATTGATGGAATTTGTCCTCTA
TGTAATAAGGTCATCCAATGGTCAACAATGATGCAGGAACTGAGCCTCAG
AACTCGAGGACATAATGAGTTTCGTGCCATTCTGCGCAAGGCAAAACGAG
GCCGTGCAAAGGCGCATGGTTCTGTCCATGAAGCAAGCGCCCCTGATGGA
GTAGCCAGCGCCGTCGAAAACCCAGGCAGCCGAGCTGCTTGCGTCGAGAG
TGCGTCAGTTGGCGTCAGCGATAGTCTCGATGTGGATAATCATGACGACG
CCAGTTTGGATGAGAATTGGACGGAGTCGTTGGATCTGGATCCGAATCCC
GATGAACTCTTGAACCGCCCAAAGGATCATAAGATGGAGTCGTCTAGGGT
GGAAATCATCATAGACGACAGTGACTGCGAAGAGATGGAGGATTTGGGAT
GAATGGATGATGCAGAGGTTGATCATACTAAACCAATCCCGGCCTACTAC
TGCTGTTATCTGCTGCGCTCGACCAAACAGCGCACCTCCCTGTATATTGG
CTCCACTCCACACCCTGCCAGGCGACTTGCGCAGCACAATGGGGAGTCTA
AAGGTGGCGCTCGCAAAACAGCCAAGGATGACAAAAGACCGTGGGAGATG
GTCTTGCTCGTTGAGGGCTTTACGAGCCGCGTTGGCGCGTTGCAATTCGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0033557 | Slx1-Slx4 complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0017108 | 5'-flap endonuclease activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| ATCC64974_8480-T1 | ATCC64974_8480-T1-protein | Aspergillus niger N402 | polypeptide |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027520 |
| DBxref | InterPro:IPR013083 |
| DBxref | InterPro:IPR000305 |
| DBxref | InterPro:IPR035901 |
| DBxref | PFAM:PF01541 |
| Product | Slx4p interacting protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| OGUI01000002.1 | supercontig | OGUI01000002.1:315476..316811 - |
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