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ATCC64974_8630-T1, ATCC64974_8630-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_8630-T1
Unique NameATCC64974_8630-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000002.1:368791..371309-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_8630-T1 ID=ATCC64974_8630-T1|Name=ATCC64974_8630-T1|organism=Aspergillus niger N402|type=mRNA|length=2519bp|location=Sequence derived from alignment at OGUI01000002.1:368791..371309- (Aspergillus niger N402)
ATGCCAATCAAACGCAAAGCTACGGATAGCGGTCGGTCAAGTAGAGCGTC
GAAACGGCCCACACCTGTGCCGGATATCGGTAGTAGTGATGAATACTCAG
ACTACGAGGAAGAAGTCAAGGATGATAACCTGAAAGGTAGCGTAGAAGTG
GAGTCTCGTTCATATGGGGTCTGCTTGCTGACATCTTCTGCTTGCAAGGT
GTCTTGGAGAAATTCTCTCTCGAATCTTTTAGCAACAAGAAGAGCGCCGC
CGTACAGAGACAGGACCCCGATTTCGGTTACAAGGACTTTTCCTCGCTAT
CGTTGAAACCCGATCATGCGAACCGCCCGCTCTGGATCGATCCTCTTAAG
GGAACTATTACCTTGGAGAGTTTCTCCCCTCTGGCACCCCAGGCGCAGGA
CTTCCTGACTACTATCGCCGAACCGCTGTCGCGTCCGACCCATCTGCACG
AATACCGATTGACAGGGAACAGTTTGTATGCGGCTGTCTCGGTGGGTTTG
CTGCCCCAGGATATCATCAACTTTCTAGATCGATTGTCGAAAACGCCGCT
TCCGGATACCATCAAGTCGTTCATTCTCGACTTCACGAAATCATACGGAA
AGATCAAGGTCGTGCTGAAACATAATCGCTTCTTCGTGGAAAGTACCGAT
CCGGCGATGTTGCAGATGCTGCTGCAGGATGAAGTTATTGGTTCTCAGCG
ATTGAAAGGCACGGAGGGCATTATTCAGCAGGCAGCCCCGAAAATGGGCG
GCCTGGTCATTCCGGGTACAAAGGATGCAGCGGGTGTCAGGCAGGCTTCG
GAGCAGAAGCCGGCGGAAGACGGTGCAGGCGAGGCTCGTAAAGAGGACGA
TATTCTGCTGGCTATTCGCGACGACGATGACGACGAGGAGGAAGTTCAAG
TGCACAGTTTCGAAATTCCCAACGAAGCAGTCGAACCCGTCAAGGCGCGC
TGTCAGGCTATGGGCTGTCCAGCATTGGAGGAGTATGATTTCCGAAATGA
TGAGATCAATCCCACCTTGGATATCGACTTGAAGCCGGCAGCACGAATTC
GAAGCTACCAAGAAAAGAGTTTGAGTAAGATGTTCGGTAACGGACGTGCG
AAGAGTGGAATTATCGTCTTGCCTTGTGGTGCCGGAAAAACGTTGGTGGG
TATTACGGCGGGCTGCACGATCAAGAAGGGGACAATTGTCTTGTGTACCA
GTTCAATGTCTGTGGTGCAATGGCGTAACGAGTTCTTGCGCTGGTCCAAT
ATTGATCCCGGTGATATTGCGGTTTTCACCTCAGATAACAAGGAGAAATT
CCGTCGATCGACTGGTATCATCGTGTCAACCTACTCCATGGTGTCCCAGA
CGCGTGCTCGGTCGCATGATGCGCAGAAGATGATGGATTGGATTCAGTCA
CGAGAGTGGGGTCTGATGATTCTTGACGAGGTGCACGTCGTGCCTGCATC
GATGTTCCGAAAGGTCACATCGGCAATCGCATGTCAGAGTAAATTGGGAT
TGACGGCAACGCTGCTGCGAGAGGATGACAAGATCAAGGATCTGAACTTC
CTGATTGGTCCCAAGTTGTACGAAGCCAACTGGATGGAACTGGCCGAGCA
AGGGCACATTGCCAAGGTTCAGTGCGCCGAGGTATGGTGTCCGATGACGA
CCGAATTCTACTCGGAGTACATGAGAGAAAAGTCAAGAAAGGCTGCTCTT
CTATACATTATGAACCCTCGGAAATTCCAAGCATGCCAGTTCCTGATCGA
CTACCACGAGAAGCGAGGTGACAAGGTCATTGTCTTTTCCGACAACGTTT
ACGCTCTTCAGCGGTATGCACTCAAGCTGAACAAGGCCTATATCTACGGC
GGTACTCCACAGAACGAGCGCATGCGCATTTTGGAGAATTTCCAGCACAA
TGAACAAGTCAATACCATCTTCCTCTCCAAGATCGGAGACACGTCGCTCG
ATCTGCCGGAAGCCACCTGTCTGATCCAGATCTCGTCGCATTACGGTTCC
CGTCGTCAGGAAGCCCAACGACTTGGTCGGATTCTGCGAGCCAAGCGTCG
AAACGACGAGGGATTCAACGCCTTCTTCTACTCGCTTGTGTCGAAAGACA
CAGATGAAATGTTCTACTCTTCCAAGCGACAGGCTTTCCTTGTCGACCAG
GGCTACGCGTTCAAGGTCATTACTCACCTGCAAGGCATCGAGAACCTGGA
AGGGTTGGCGTACGCCACGCCCAGCGAACGCCGTGAGCTGCTGCAGGAGG
TGATGTTACAGAACGAGACTTCTGCCGAGGTAGAGCACGTCACGGACGAT
CTCTTCTCAGGACGTTCGGGCGGCCAGCGAAAGGGAGCAGTCAAGCGCAG
TGCCGCGACACTCAGCGGCCTGGCCGGCGGTGAAGACATGGCGTATATCG
AGTACAACAAGAGCCGGAACAAGCAGCTGAAGGACAAGGTGGGCCATCAC
CCGCTGTTCCGGAAGCTGGAGCGGGAACGACTCAAGCGGAAGAAGGAGTT
GGAGGATTTCATGCGGTAG
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Coding sequence (CDS) from alignment at OGUI01000002.1:368791..371309-

>ATCC64974_8630-T1 ID=ATCC64974_8630-T1|Name=ATCC64974_8630-T1|organism=Aspergillus niger N402|type=CDS|length=4914bp|location=Sequence derived from alignment at OGUI01000002.1:368791..371309- (Aspergillus niger N402)
GTGTCTTGGAGAAATTCTCTCTCGAATCTTTTAGCAACAAGAAGAGCGCC
GCCGTACAGAGACAGGACCCCGATTTCGGTTACAAGGACTTTTCCTCGCT
ATCGTTGAAACCCGATCATGCGAACCGCCCGCTCTGGATCGATCCTCTTA
AGGGAACTATTACCTTGGAGAGTTTCTCCCCTCTGGCACCCCAGGCGCAG
GACTTCCTGACTACTATCGCCGAACCGCTGTCGCGTCCGACCCATCTGCA
CGAATACCGATTGACAGGGAACAGTTTGTATGCGGCTGTCTCGGTGGGTT
TGCTGCCCCAGGATATCATCAACTTTCTAGATCGATTGTCGAAAACGCCG
CTTCCGGATACCATCAAGTCGTTCATTCTCGACTTCACGAAATCATACGG
AAAGATCAAGGTCGTGCTGAAACATAATCGCTTCTTCGTGGAAAGTACCG
ATCCGGCGATGTTGCAGATGCTGCTGCAGGATGAAGTTATTGGTTCTCAG
CGATTGAAAGGCACGGAGGGCATTATTCAGCAGGCAGCCCCGAAAATGGG
CGGCCTGGTCATTCCGGGTACAAAGGATGCAGCGGGTGTCAGGCAGGCTT
CGGAGCAGAAGCCGGCGGAAGACGGTGCAGGCGAGGCTCGTAAAGAGGAC
GATATTCTGCTGGCTATTCGCGACGACGATGACGACGAGGAGGAAGTTCA
AGTGCACAGTTTCGAAATTCCCAACGAAGCAGTCGAACCCGTCAAGGCGC
GCTGTCAGGCTATGGGCTGTCCAGCATTGGAGGAGTATGATTTCCGAAAT
GATGAGATCAATCCCACCTTGGATATCGACTTGAAGCCGGCAGCACGAAT
TCGAAGCTACCAAGAAAAGAGTTTGAGTAAGATGTTCGGTAACGGACGTG
CGAAGAGTGGAATTATCGTCTTGCCTTGTGGTGCCGGAAAAACGTTGGTG
GGTATTACGGCGGGCTGCACGATCAAGAAGGGGACAATTGTCTTGTGTAC
CAGTTCAATGTCTGTGGTGCAATGGCGTAACGAGTTCTTGCGCTGGTCCA
ATATTGATCCCGGTGATATTGCGGTTTTCACCTCAGATAACAAGGAGAAA
TTCCGTCGATCGACTGGTATCATCGTGTCAACCTACTCCATGGTGTCCCA
GACGCGTGCTCGGTCGCATGATGCGCAGAAGATGATGGATTGGATTCAGT
CACGAGAGTGGGGTCTGATGATTCTTGACGAGGTGCACGTCGTGCCTGCA
TCGATGTTCCGAAAGGTCACATCGGCAATCGCATGTCAGAGTAAATTGGG
ATTGACGGCAACGCTGCTGCGAGAGGATGACAAGATCAAGGATCTGAACT
TCCTGATTGGTCCCAAGTTGTACGAAGCCAACTGGATGGAACTGGCCGAG
CAAGGGCACATTGCCAAGGTTCAGTGCGCCGAGGTATGGTGTCCGATGAC
GACCGAATTCTACTCGGAGTACATGAGAGAAAAGTCAAGAAAGGCTGCTC
TTCTATACATTATGAACCCTCGGAAATTCCAAGCATGCCAGTTCCTGATC
GACTACCACGAGAAGCGAGGTGACAAGGTCATTGTCTTTTCCGACAACGT
TTACGCTCTTCAGCGGTATGCACTCAAGCTGAACAAGGCCTATATCTACG
GCGGTACTCCACAGAACGAGCGCATGCGCATTTTGGAGAATTTCCAGCAC
AATGAACAAGTCAATACCATCTTCCTCTCCAAGATCGGAGACACGTCGCT
CGATCTGCCGGAAGCCACCTGTCTGATCCAGATCTCGTCGCATTACGGTT
CCCGTCGTCAGGAAGCCCAACGACTTGGTCGGATTCTGCGAGCCAAGCGT
CGAAACGACGAGGGATTCAACGCCTTCTTCTACTCGCTTGTGTCGAAAGA
CACAGATGAAATGTTCTACTCTTCCAAGCGACAGGCTTTCCTTGTCGACC
AGGGCTACGCGTTCAAGGTCATTACTCACCTGCAAGGCATCGAGAACCTG
GAAGGGTTGGCGTACGCCACGCCCAGCGAACGCCGTGAGCTGCTGCAGGA
GGTGATGTTACAGAACGAGACTTCTGCCGAGGTAGAGCACGTCACGGACG
ATCTCTTCTCAGGACGTTCGGGCGGCCAGCGAAAGGGAGCAGTCAAGCGC
AGTGCCGCGACACTCAGCGGCCTGGCCGGCGGTGAAGACATGGCGTATAT
CGAGTACAACAAGAGCCGGAACAAGCAGCTGAAGGACAAGGTGGGCCATC
ACCCGCTGTTCCGGAAGCTGGAGCGGGAACGACTCAAGCGGAAGAAGGAG
TTGGAGGATTTCATGCGGTAGATGCCAATCAAACGCAAAGCTACGGATAG
CGGTCGGTCAAGTAGAGCGTCGAAACGGCCCACACCTGTGCCGGATATCG
GTAGTAGTGATGAATACTCAGACTACGAGGAAGAAGTCAAGGATGATAAC
CTGAAAGGTGTCTTGGAGAAATTCTCTCTCGAATCTTTTAGCAACAAGAA
GAGCGCCGCCGTACAGAGACAGGACCCCGATTTCGGTTACAAGGACTTTT
CCTCGCTATCGTTGAAACCCGATCATGCGAACCGCCCGCTCTGGATCGAT
CCTCTTAAGGGAACTATTACCTTGGAGAGTTTCTCCCCTCTGGCACCCCA
GGCGCAGGACTTCCTGACTACTATCGCCGAACCGCTGTCGCGTCCGACCC
ATCTGCACGAATACCGATTGACAGGGAACAGTTTGTATGCGGCTGTCTCG
GTGGGTTTGCTGCCCCAGGATATCATCAACTTTCTAGATCGATTGTCGAA
AACGCCGCTTCCGGATACCATCAAGTCGTTCATTCTCGACTTCACGAAAT
CATACGGAAAGATCAAGGTCGTGCTGAAACATAATCGCTTCTTCGTGGAA
AGTACCGATCCGGCGATGTTGCAGATGCTGCTGCAGGATGAAGTTATTGG
TTCTCAGCGATTGAAAGGCACGGAGGGCATTATTCAGCAGGCAGCCCCGA
AAATGGGCGGCCTGGTCATTCCGGGTACAAAGGATGCAGCGGGTGTCAGG
CAGGCTTCGGAGCAGAAGCCGGCGGAAGACGGTGCAGGCGAGGCTCGTAA
AGAGGACGATATTCTGCTGGCTATTCGCGACGACGATGACGACGAGGAGG
AAGTTCAAGTGCACAGTTTCGAAATTCCCAACGAAGCAGTCGAACCCGTC
AAGGCGCGCTGTCAGGCTATGGGCTGTCCAGCATTGGAGGAGTATGATTT
CCGAAATGATGAGATCAATCCCACCTTGGATATCGACTTGAAGCCGGCAG
CACGAATTCGAAGCTACCAAGAAAAGAGTTTGAGTAAGATGTTCGGTAAC
GGACGTGCGAAGAGTGGAATTATCGTCTTGCCTTGTGGTGCCGGAAAAAC
GTTGGTGGGTATTACGGCGGGCTGCACGATCAAGAAGGGGACAATTGTCT
TGTGTACCAGTTCAATGTCTGTGGTGCAATGGCGTAACGAGTTCTTGCGC
TGGTCCAATATTGATCCCGGTGATATTGCGGTTTTCACCTCAGATAACAA
GGAGAAATTCCGTCGATCGACTGGTATCATCGTGTCAACCTACTCCATGG
TGTCCCAGACGCGTGCTCGGTCGCATGATGCGCAGAAGATGATGGATTGG
ATTCAGTCACGAGAGTGGGGTCTGATGATTCTTGACGAGGTGCACGTCGT
GCCTGCATCGATGTTCCGAAAGGTCACATCGGCAATCGCATGTCAGAGTA
AATTGGGATTGACGGCAACGCTGCTGCGAGAGGATGACAAGATCAAGGAT
CTGAACTTCCTGATTGGTCCCAAGTTGTACGAAGCCAACTGGATGGAACT
GGCCGAGCAAGGGCACATTGCCAAGGTTCAGTGCGCCGAGGTATGGTGTC
CGATGACGACCGAATTCTACTCGGAGTACATGAGAGAAAAGTCAAGAAAG
GCTGCTCTTCTATACATTATGAACCCTCGGAAATTCCAAGCATGCCAGTT
CCTGATCGACTACCACGAGAAGCGAGGTGACAAGGTCATTGTCTTTTCCG
ACAACGTTTACGCTCTTCAGCGGTATGCACTCAAGCTGAACAAGGCCTAT
ATCTACGGCGGTACTCCACAGAACGAGCGCATGCGCATTTTGGAGAATTT
CCAGCACAATGAACAAGTCAATACCATCTTCCTCTCCAAGATCGGAGACA
CGTCGCTCGATCTGCCGGAAGCCACCTGTCTGATCCAGATCTCGTCGCAT
TACGGTTCCCGTCGTCAGGAAGCCCAACGACTTGGTCGGATTCTGCGAGC
CAAGCGTCGAAACGACGAGGGATTCAACGCCTTCTTCTACTCGCTTGTGT
CGAAAGACACAGATGAAATGTTCTACTCTTCCAAGCGACAGGCTTTCCTT
GTCGACCAGGGCTACGCGTTCAAGGTCATTACTCACCTGCAAGGCATCGA
GAACCTGGAAGGGTTGGCGTACGCCACGCCCAGCGAACGCCGTGAGCTGC
TGCAGGAGGTGATGTTACAGAACGAGACTTCTGCCGAGGTAGAGCACGTC
ACGGACGATCTCTTCTCAGGACGTTCGGGCGGCCAGCGAAAGGGAGCAGT
CAAGCGCAGTGCCGCGACACTCAGCGGCCTGGCCGGCGGTGAAGACATGG
CGTATATCGAGTACAACAAGAGCCGGAACAAGCAGCTGAAGGACAAGGTG
GGCCATCACCCGCTGTTCCGGAAGCTGGAGCGGGAACGACTCAAGCGGAA
GAAGGAGTTGGAGGATTTCATGCGGTAGATGCCAATCAAACGCAAAGCTA
CGGATAGCGGTCGGTCAAGTAGAGCGTCGAAACGGCCCACACCTGTGCCG
GATATCGGTAGTAGTGATGAATACTCAGACTACGAGGAAGAAGTCAAGGA
TGATAACCTGAAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
GO:0006289nucleotide-excision repair
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
GO:0016787hydrolase activity
GO:0005524ATP binding
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SSL2ATCC64974_8630Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_8630-T1ATCC64974_8630-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_8630-T1.cdsATCC64974_8630-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_8630-T1.exon2ATCC64974_8630-T1.exon2Aspergillus niger N402exon
ATCC64974_8630-T1.exon1ATCC64974_8630-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG09260HSP
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR032438
DBxrefInterPro:IPR001161
DBxrefInterPro:IPR006935
DBxrefInterPro:IPR032830
DBxrefInterPro:IPR001650
DBxrefInterPro:IPR014001
DBxrefPFAM:PF04851
DBxrefPFAM:PF13625
DBxrefPFAM:PF00271
DBxrefPFAM:PF16203
ProductDNA repair helicase RAD25
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000002.1supercontigOGUI01000002.1:368791..371309 -
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