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Sequences
The following sequences are available for this feature:
mRNA from alignment at OGUI01000016.1:1288589..1289109- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC64974_90830-T1 ID=ATCC64974_90830-T1|Name=ATCC64974_90830-T1|organism=Aspergillus niger N402|type=mRNA|length=521bp|location=Sequence derived from alignment at OGUI01000016.1:1288589..1289109- (Aspergillus niger N402)
ATGAAGCTCGTCCGGTAAGCCAACCGCTGCAGATCGCGCCTGGTGCAGCT
GTGCCCGCGAAGATTGCACAGCGACTAATTCCTATCCGCACAGGTTTCTG
ATGAAGTGCGCCAACGAGACGGTGACGATTGAGCTGAAGAATGGTGAGTT
TCCTATCCCTTTATTTCTTCCAGCGCCTGAAGCTCCATCCATCTCAACAT
CAAATCTAACCACAAATAGGCACCATCCTCCACGGCACCATCACCTCCGT
CTCCCCCCAGATGAACACCTCCCTCCGCACGGTTAAAATGACCCCCAAAG
GCCGCGACCCCATCTCCCTCGACACCATCAACATCCGTGGCTCCACGATT
CGCTACTACATCCTGCCCGATAGTCTGCCCCTCGATACGCTGCTGATCGA
CGACACGCCCAAGCCGAAGAACAAGGCGCGCAAGGAAGCGGACCGCGGAG
GCCGTGGTGGTCGTGGTGGTCCTCGTGGTAGAGGGCGCGGTCGTGGCCGT
GGTCGTGGTCGTGGATTCTAA back to topCoding sequence (CDS) from alignment at OGUI01000016.1:1288589..1289109- >ATCC64974_90830-T1 ID=ATCC64974_90830-T1|Name=ATCC64974_90830-T1|organism=Aspergillus niger N402|type=CDS|length=1098bp|location=Sequence derived from alignment at OGUI01000016.1:1288589..1289109- (Aspergillus niger N402)
GCACCATCCTCCACGGCACCATCACCTCCGTCTCCCCCCAGATGAACACC
TCCCTCCGCACGGTTAAAATGACCCCCAAAGGCCGCGACCCCATCTCCCT
CGACACCATCAACATCCGTGGCTCCACGATTCGCTACTACATCCTGCCCG
ATAGTCTGCCCCTCGATACGCTGCTGATCGACGACACGCCCAAGCCGAAG
AACAAGGCGCGCAAGGAAGCGGACCGCGGAGGCCGTGGTGGTCGTGGTGG
TCCTCGTGGTAGAGGGCGCGGTCGTGGCCGTGGTCGTGGTCGTGGATTCT
AAGTTTCTGATGAAGTGCGCCAACGAGACGGTGACGATTGAGCTGAAGAA
TGATGAAGCTCGTCCGGCACCATCCTCCACGGCACCATCACCTCCGTCTC
CCCCCAGATGAACACCTCCCTCCGCACGGTTAAAATGACCCCCAAAGGCC
GCGACCCCATCTCCCTCGACACCATCAACATCCGTGGCTCCACGATTCGC
TACTACATCCTGCCCGATAGTCTGCCCCTCGATACGCTGCTGATCGACGA
CACGCCCAAGCCGAAGAACAAGGCGCGCAAGGAAGCGGACCGCGGAGGCC
GTGGTGGTCGTGGTGGTCCTCGTGGTAGAGGGCGCGGTCGTGGCCGTGGT
CGTGGTCGTGGATTCTAAGTTTCTGATGAAGTGCGCCAACGAGACGGTGA
CGATTGAGCTGAAGAATGATGAAGCTCGTCCGGCACCATCCTCCACGGCA
CCATCACCTCCGTCTCCCCCCAGATGAACACCTCCCTCCGCACGGTTAAA
ATGACCCCCAAAGGCCGCGACCCCATCTCCCTCGACACCATCAACATCCG
TGGCTCCACGATTCGCTACTACATCCTGCCCGATAGTCTGCCCCTCGATA
CGCTGCTGATCGACGACACGCCCAAGCCGAAGAACAAGGCGCGCAAGGAA
GCGGACCGCGGAGGCCGTGGTGGTCGTGGTGGTCCTCGTGGTAGAGGGCG
CGGTCGTGGCCGTGGTCGTGGTCGTGGATTCTAAGTTTCTGATGAAGTGC
GCCAACGAGACGGTGACGATTGAGCTGAAGAATGATGAAGCTCGTCCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000387 | spliceosomal snRNP assembly |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| ATCC64974_90830-T1 | ATCC64974_90830-T1-protein | Aspergillus niger N402 | polypeptide |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09265FL1 |
| DBxref | InterPro:IPR010920 |
| DBxref | InterPro:IPR034102 |
| DBxref | InterPro:IPR001163 |
| DBxref | PFAM:PF01423 |
| Product | mRNA splicing protein smd1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| OGUI01000016.1 | supercontig | OGUI01000016.1:1288589..1289109 - |
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