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Sequences
The following sequences are available for this feature:
mRNA from alignment at OGUI01000016.1:2100812..2103086- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC64974_93570-T1 ID=ATCC64974_93570-T1|Name=ATCC64974_93570-T1|organism=Aspergillus niger N402|type=mRNA|length=2275bp|location=Sequence derived from alignment at OGUI01000016.1:2100812..2103086- (Aspergillus niger N402)
ATGCGCAGTCAGAAGGGTGCCACTACTTTAGTGTGAGTGTTTGGCGCGCA
AAATGTCGCATGGGCAGGGGGAATATCCGAGGAATAAAATACCAACTATC
TAGGAGTTCGTGAAACCAACGGCGGGTGGGCCGTTCCTCGTTCCTCGCCC
CTACGAGCCAAGCAGGGTCCAAGCCGATCCGTGGTGGAGATACTCTCTCA
ACTCCTAAGCTCCTGTCAGTCTCCTCTCCGACTCTTCCGCAACAAACCCT
CCCCCTCCCCACCCAATTCCCACTGTCGACCTTGACAACTATATGCGTCA
TCCAGCCGCAGATATGATTGATTAACCTGAAAGCATTTCTCATCTCGGAC
TCTATAGCCACAATAATGCCGAAGACATCTTCCCTTGGCCTGTGCCGTTC
GGGTCATGGCAGGCCGAGACAACTAATATCCGGAAAGATCGGCGCGCGGT
TAATATCGAACCGTGTGGAGACAGTGGCCGGGCTACTTTGACTTGCGTCA
GCTTGTCCTATAGCGAGTCATGCCATTGCGGGATGTCCGTGGGCATAATA
ACGGTTACTGAATAGTGTTATTCGATTTCACACTCCTGTTGGTGGAGTAA
TAGAGAGCTTTGCGGAGACTATGCCTCTGTCTCAGGGTCTTCTATTTTAG
GGGGGATTGGGTGGAGTTTGCATATATAATTCCTGGTGACGCTGCGGAAT
GCTGATTTTGCTAAAGAAGAAAAGAGCTATCGCACTTCACTCATCATCGG
CACCATGACCTGGCCCACGTCCTCGTGGCAATTTCTTTGCTTTCCATCAC
CACCTCGATCCATGCCCAACTAACGGGATCAGTTGGACCCCTGACCTCCG
TTTCAGACAAGGCCGCTGTGAAGACCTGCAATGTCCTCGACTACGGAGCC
AGGTCGGACAATACCACCGATGTGGGACAGCCCATTATCGACGCTTTCGC
TGACTGCGGTAGCGGTGGTCTCATTTATATCCCTGAGGGTGACTATCTCT
TGAAAAACTGGATCTCTCTGGAAAATGGCTCCGCGTGGGCTATCCAGCTC
GATGGCGTGCTTTACCGGGACTCTTCGCCCTCCTCCCAGTCGTACATGTT
CGAGATCTCCGGTGGCAGAGATTTCGAGCTGTTTAGTTCAAATGCGACAG
GTGCTATTCAAGGTAGCGGGTACCTTTACCACCGAGATGATACGTACACT
GGTCCCCGGATGCTGCACATTTCCGGGGTGTCGGATTGGTCTGTTCATGA
CCTGGTGTTGGTAGACTCGCCTATGTTCCACTTTGTCATCGACGGCGGTT
ACAATGGAGAAGTGTACAATATGGCCATCCGTGGTGCTGATCACGGTGGT
CTGGATGGTATCGATGTCTATGGCGACAATATGTGGATTCACGATGTGAC
TTCCGCTGCCCCAAGAACTTAATTTTGTATTGAGATAAGCTAATGATATG
GTAGATTATGGTCACCAACAAGGACGAATGTGTCACAACCAAGGTTAGTG
AATAGCAATATCTCCCAACTACCAAAGTACTAATTCTGATTGCAACAGAC
CAACTCCCACAACTTCCTAATTGAGAACATCTACTGCAACTCCAGCGGCG
GATGCGCCATCGGATCCCTCGGTTCCGGTGCCAACGTCAGCAACATCGTC
TACCGCAACGTCTACACATGGGACTCGAATCAGATGATGATGATCAAGAG
CAACGGCGGCTCGGGCGATGTATCCAACGCCGTGTTTGAGAATTTCATCG
GTCCATAAGCCAGCCCCATCCCTTCCATTCCCCAACGCAAAAGCTAATAA
GCGATAAGGCCACGGAAACGCTTACTCCCTCGACCTCGACAGTTACTGGA
GCAGCATGGACGCTATCGACGGCGACGGCATCTACTACCATAACATCACA
TTCCAGAACTGGACGGGAACCGCCGTCGATGGTGAAACCCGGCCTCCTAT
TCGAGTCATCTGCCCCGAAGACACACCCTGCACCGAGATCGCCCTCGTCC
AGATTGACCTGTGGGTTGAAGAAGGTGGTTACGATGAGTACATTTGCAAG
AATGCGTATGGATCGGGCTACTGTCTTGACTCTGCTACCGGTACTTCCAC
CCCTTACACAACAACTACTTATGTGAACTCTGCCCCGACGGGATATGAGG
CGCCCACTATGACTGATGATTTGGCCACCGCTTTTGGCACGTCGGCTTCG
ATTCCGATTCCTACTATTCCGGCGTCTTTCTTCCCTGGTGTGACACCGAT
TAGTGCCGTGGCTGGGAGTTCTTGA back to topCoding sequence (CDS) from alignment at OGUI01000016.1:2100812..2103086- >ATCC64974_93570-T1 ID=ATCC64974_93570-T1|Name=ATCC64974_93570-T1|organism=Aspergillus niger N402|type=CDS|length=7095bp|location=Sequence derived from alignment at OGUI01000016.1:2100812..2103086- (Aspergillus niger N402)
GCCACGGAAACGCTTACTCCCTCGACCTCGACAGTTACTGGAGCAGCATG
GACGCTATCGACGGCGACGGCATCTACTACCATAACATCACATTCCAGAA
CTGGACGGGAACCGCCGTCGATGGTGAAACCCGGCCTCCTATTCGAGTCA
TCTGCCCCGAAGACACACCCTGCACCGAGATCGCCCTCGTCCAGATTGAC
CTGTGGGTTGAAGAAGGTGGTTACGATGAGTACATTTGCAAGAATGCGTA
TGGATCGGGCTACTGTCTTGACTCTGCTACCGGTACTTCCACCCCTTACA
CAACAACTACTTATGTGAACTCTGCCCCGACGGGATATGAGGCGCCCACT
ATGACTGATGATTTGGCCACCGCTTTTGGCACGTCGGCTTCGATTCCGAT
TCCTACTATTCCGGCGTCTTTCTTCCCTGGTGTGACACCGATTAGTGCCG
TGGCTGGGAGTTCTTGAACCAACTCCCACAACTTCCTAATTGAGAACATC
TACTGCAACTCCAGCGGCGGATGCGCCATCGGATCCCTCGGTTCCGGTGC
CAACGTCAGCAACATCGTCTACCGCAACGTCTACACATGGGACTCGAATC
AGATGATGATGATCAAGAGCAACGGCGGCTCGGGCGATGTATCCAACGCC
GTGTTTGAGAATTTCATCGATTATGGTCACCAACAAGGACGAATGTGTCA
CAACCAAGAAGAAAAGAGCTATCGCACTTCACTCATCATCGGCACCATGA
CCTGGCCCACGTCCTCGTGGCAATTTCTTTGCTTTCCATCACCACCTCGA
TCCATGCCCAACTAACGGGATCAGTTGGACCCCTGACCTCCGTTTCAGAC
AAGGCCGCTGTGAAGACCTGCAATGTCCTCGACTACGGAGCCAGGTCGGA
CAATACCACCGATGTGGGACAGCCCATTATCGACGCTTTCGCTGACTGCG
GTAGCGGTGGTCTCATTTATATCCCTGAGGGTGACTATCTCTTGAAAAAC
TGGATCTCTCTGGAAAATGGCTCCGCGTGGGCTATCCAGCTCGATGGCGT
GCTTTACCGGGACTCTTCGCCCTCCTCCCAGTCGTACATGTTCGAGATCT
CCGGTGGCAGAGATTTCGAGCTGTTTAGTTCAAATGCGACAGGTGCTATT
CAAGGTAGCGGGTACCTTTACCACCGAGATGATACGTACACTGGTCCCCG
GATGCTGCACATTTCCGGGGTGTCGGATTGGTCTGTTCATGACCTGGTGT
TGGTAGACTCGCCTATGTTCCACTTTGTCATCGACGGCGGTTACAATGGA
GAAGTGTACAATATGGCCATCCGTGGTGCTGATCACGGTGGTCTGGATGG
TATCGATGTCTATGGCGACAATATGTGGATTCACGATATGCGCAGTCAGA
AGGGTGCCACTACTTTAGTGCCACGGAAACGCTTACTCCCTCGACCTCGA
CAGTTACTGGAGCAGCATGGACGCTATCGACGGCGACGGCATCTACTACC
ATAACATCACATTCCAGAACTGGACGGGAACCGCCGTCGATGGTGAAACC
CGGCCTCCTATTCGAGTCATCTGCCCCGAAGACACACCCTGCACCGAGAT
CGCCCTCGTCCAGATTGACCTGTGGGTTGAAGAAGGTGGTTACGATGAGT
ACATTTGCAAGAATGCGTATGGATCGGGCTACTGTCTTGACTCTGCTACC
GGTACTTCCACCCCTTACACAACAACTACTTATGTGAACTCTGCCCCGAC
GGGATATGAGGCGCCCACTATGACTGATGATTTGGCCACCGCTTTTGGCA
CGTCGGCTTCGATTCCGATTCCTACTATTCCGGCGTCTTTCTTCCCTGGT
GTGACACCGATTAGTGCCGTGGCTGGGAGTTCTTGAACCAACTCCCACAA
CTTCCTAATTGAGAACATCTACTGCAACTCCAGCGGCGGATGCGCCATCG
GATCCCTCGGTTCCGGTGCCAACGTCAGCAACATCGTCTACCGCAACGTC
TACACATGGGACTCGAATCAGATGATGATGATCAAGAGCAACGGCGGCTC
GGGCGATGTATCCAACGCCGTGTTTGAGAATTTCATCGATTATGGTCACC
AACAAGGACGAATGTGTCACAACCAAGAAGAAAAGAGCTATCGCACTTCA
CTCATCATCGGCACCATGACCTGGCCCACGTCCTCGTGGCAATTTCTTTG
CTTTCCATCACCACCTCGATCCATGCCCAACTAACGGGATCAGTTGGACC
CCTGACCTCCGTTTCAGACAAGGCCGCTGTGAAGACCTGCAATGTCCTCG
ACTACGGAGCCAGGTCGGACAATACCACCGATGTGGGACAGCCCATTATC
GACGCTTTCGCTGACTGCGGTAGCGGTGGTCTCATTTATATCCCTGAGGG
TGACTATCTCTTGAAAAACTGGATCTCTCTGGAAAATGGCTCCGCGTGGG
CTATCCAGCTCGATGGCGTGCTTTACCGGGACTCTTCGCCCTCCTCCCAG
TCGTACATGTTCGAGATCTCCGGTGGCAGAGATTTCGAGCTGTTTAGTTC
AAATGCGACAGGTGCTATTCAAGGTAGCGGGTACCTTTACCACCGAGATG
ATACGTACACTGGTCCCCGGATGCTGCACATTTCCGGGGTGTCGGATTGG
TCTGTTCATGACCTGGTGTTGGTAGACTCGCCTATGTTCCACTTTGTCAT
CGACGGCGGTTACAATGGAGAAGTGTACAATATGGCCATCCGTGGTGCTG
ATCACGGTGGTCTGGATGGTATCGATGTCTATGGCGACAATATGTGGATT
CACGATATGCGCAGTCAGAAGGGTGCCACTACTTTAGTGCCACGGAAACG
CTTACTCCCTCGACCTCGACAGTTACTGGAGCAGCATGGACGCTATCGAC
GGCGACGGCATCTACTACCATAACATCACATTCCAGAACTGGACGGGAAC
CGCCGTCGATGGTGAAACCCGGCCTCCTATTCGAGTCATCTGCCCCGAAG
ACACACCCTGCACCGAGATCGCCCTCGTCCAGATTGACCTGTGGGTTGAA
GAAGGTGGTTACGATGAGTACATTTGCAAGAATGCGTATGGATCGGGCTA
CTGTCTTGACTCTGCTACCGGTACTTCCACCCCTTACACAACAACTACTT
ATGTGAACTCTGCCCCGACGGGATATGAGGCGCCCACTATGACTGATGAT
TTGGCCACCGCTTTTGGCACGTCGGCTTCGATTCCGATTCCTACTATTCC
GGCGTCTTTCTTCCCTGGTGTGACACCGATTAGTGCCGTGGCTGGGAGTT
CTTGAACCAACTCCCACAACTTCCTAATTGAGAACATCTACTGCAACTCC
AGCGGCGGATGCGCCATCGGATCCCTCGGTTCCGGTGCCAACGTCAGCAA
CATCGTCTACCGCAACGTCTACACATGGGACTCGAATCAGATGATGATGA
TCAAGAGCAACGGCGGCTCGGGCGATGTATCCAACGCCGTGTTTGAGAAT
TTCATCGATTATGGTCACCAACAAGGACGAATGTGTCACAACCAAGAAGA
AAAGAGCTATCGCACTTCACTCATCATCGGCACCATGACCTGGCCCACGT
CCTCGTGGCAATTTCTTTGCTTTCCATCACCACCTCGATCCATGCCCAAC
TAACGGGATCAGTTGGACCCCTGACCTCCGTTTCAGACAAGGCCGCTGTG
AAGACCTGCAATGTCCTCGACTACGGAGCCAGGTCGGACAATACCACCGA
TGTGGGACAGCCCATTATCGACGCTTTCGCTGACTGCGGTAGCGGTGGTC
TCATTTATATCCCTGAGGGTGACTATCTCTTGAAAAACTGGATCTCTCTG
GAAAATGGCTCCGCGTGGGCTATCCAGCTCGATGGCGTGCTTTACCGGGA
CTCTTCGCCCTCCTCCCAGTCGTACATGTTCGAGATCTCCGGTGGCAGAG
ATTTCGAGCTGTTTAGTTCAAATGCGACAGGTGCTATTCAAGGTAGCGGG
TACCTTTACCACCGAGATGATACGTACACTGGTCCCCGGATGCTGCACAT
TTCCGGGGTGTCGGATTGGTCTGTTCATGACCTGGTGTTGGTAGACTCGC
CTATGTTCCACTTTGTCATCGACGGCGGTTACAATGGAGAAGTGTACAAT
ATGGCCATCCGTGGTGCTGATCACGGTGGTCTGGATGGTATCGATGTCTA
TGGCGACAATATGTGGATTCACGATATGCGCAGTCAGAAGGGTGCCACTA
CTTTAGTGCCACGGAAACGCTTACTCCCTCGACCTCGACAGTTACTGGAG
CAGCATGGACGCTATCGACGGCGACGGCATCTACTACCATAACATCACAT
TCCAGAACTGGACGGGAACCGCCGTCGATGGTGAAACCCGGCCTCCTATT
CGAGTCATCTGCCCCGAAGACACACCCTGCACCGAGATCGCCCTCGTCCA
GATTGACCTGTGGGTTGAAGAAGGTGGTTACGATGAGTACATTTGCAAGA
ATGCGTATGGATCGGGCTACTGTCTTGACTCTGCTACCGGTACTTCCACC
CCTTACACAACAACTACTTATGTGAACTCTGCCCCGACGGGATATGAGGC
GCCCACTATGACTGATGATTTGGCCACCGCTTTTGGCACGTCGGCTTCGA
TTCCGATTCCTACTATTCCGGCGTCTTTCTTCCCTGGTGTGACACCGATT
AGTGCCGTGGCTGGGAGTTCTTGAACCAACTCCCACAACTTCCTAATTGA
GAACATCTACTGCAACTCCAGCGGCGGATGCGCCATCGGATCCCTCGGTT
CCGGTGCCAACGTCAGCAACATCGTCTACCGCAACGTCTACACATGGGAC
TCGAATCAGATGATGATGATCAAGAGCAACGGCGGCTCGGGCGATGTATC
CAACGCCGTGTTTGAGAATTTCATCGATTATGGTCACCAACAAGGACGAA
TGTGTCACAACCAAGAAGAAAAGAGCTATCGCACTTCACTCATCATCGGC
ACCATGACCTGGCCCACGTCCTCGTGGCAATTTCTTTGCTTTCCATCACC
ACCTCGATCCATGCCCAACTAACGGGATCAGTTGGACCCCTGACCTCCGT
TTCAGACAAGGCCGCTGTGAAGACCTGCAATGTCCTCGACTACGGAGCCA
GGTCGGACAATACCACCGATGTGGGACAGCCCATTATCGACGCTTTCGCT
GACTGCGGTAGCGGTGGTCTCATTTATATCCCTGAGGGTGACTATCTCTT
GAAAAACTGGATCTCTCTGGAAAATGGCTCCGCGTGGGCTATCCAGCTCG
ATGGCGTGCTTTACCGGGACTCTTCGCCCTCCTCCCAGTCGTACATGTTC
GAGATCTCCGGTGGCAGAGATTTCGAGCTGTTTAGTTCAAATGCGACAGG
TGCTATTCAAGGTAGCGGGTACCTTTACCACCGAGATGATACGTACACTG
GTCCCCGGATGCTGCACATTTCCGGGGTGTCGGATTGGTCTGTTCATGAC
CTGGTGTTGGTAGACTCGCCTATGTTCCACTTTGTCATCGACGGCGGTTA
CAATGGAGAAGTGTACAATATGGCCATCCGTGGTGCTGATCACGGTGGTC
TGGATGGTATCGATGTCTATGGCGACAATATGTGGATTCACGATATGCGC
AGTCAGAAGGGTGCCACTACTTTAGTGCCACGGAAACGCTTACTCCCTCG
ACCTCGACAGTTACTGGAGCAGCATGGACGCTATCGACGGCGACGGCATC
TACTACCATAACATCACATTCCAGAACTGGACGGGAACCGCCGTCGATGG
TGAAACCCGGCCTCCTATTCGAGTCATCTGCCCCGAAGACACACCCTGCA
CCGAGATCGCCCTCGTCCAGATTGACCTGTGGGTTGAAGAAGGTGGTTAC
GATGAGTACATTTGCAAGAATGCGTATGGATCGGGCTACTGTCTTGACTC
TGCTACCGGTACTTCCACCCCTTACACAACAACTACTTATGTGAACTCTG
CCCCGACGGGATATGAGGCGCCCACTATGACTGATGATTTGGCCACCGCT
TTTGGCACGTCGGCTTCGATTCCGATTCCTACTATTCCGGCGTCTTTCTT
CCCTGGTGTGACACCGATTAGTGCCGTGGCTGGGAGTTCTTGAACCAACT
CCCACAACTTCCTAATTGAGAACATCTACTGCAACTCCAGCGGCGGATGC
GCCATCGGATCCCTCGGTTCCGGTGCCAACGTCAGCAACATCGTCTACCG
CAACGTCTACACATGGGACTCGAATCAGATGATGATGATCAAGAGCAACG
GCGGCTCGGGCGATGTATCCAACGCCGTGTTTGAGAATTTCATCGATTAT
GGTCACCAACAAGGACGAATGTGTCACAACCAAGAAGAAAAGAGCTATCG
CACTTCACTCATCATCGGCACCATGACCTGGCCCACGTCCTCGTGGCAAT
TTCTTTGCTTTCCATCACCACCTCGATCCATGCCCAACTAACGGGATCAG
TTGGACCCCTGACCTCCGTTTCAGACAAGGCCGCTGTGAAGACCTGCAAT
GTCCTCGACTACGGAGCCAGGTCGGACAATACCACCGATGTGGGACAGCC
CATTATCGACGCTTTCGCTGACTGCGGTAGCGGTGGTCTCATTTATATCC
CTGAGGGTGACTATCTCTTGAAAAACTGGATCTCTCTGGAAAATGGCTCC
GCGTGGGCTATCCAGCTCGATGGCGTGCTTTACCGGGACTCTTCGCCCTC
CTCCCAGTCGTACATGTTCGAGATCTCCGGTGGCAGAGATTTCGAGCTGT
TTAGTTCAAATGCGACAGGTGCTATTCAAGGTAGCGGGTACCTTTACCAC
CGAGATGATACGTACACTGGTCCCCGGATGCTGCACATTTCCGGGGTGTC
GGATTGGTCTGTTCATGACCTGGTGTTGGTAGACTCGCCTATGTTCCACT
TTGTCATCGACGGCGGTTACAATGGAGAAGTGTACAATATGGCCATCCGT
GGTGCTGATCACGGTGGTCTGGATGGTATCGATGTCTATGGCGACAATAT
GTGGATTCACGATATGCGCAGTCAGAAGGGTGCCACTACTTTAGT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004650 | polygalacturonase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| ATCC64974_93570-T1 | ATCC64974_93570-T1-protein | Aspergillus niger N402 | polypeptide |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | CAZy:GH28 |
| DBxref | InterPro:IPR011050 |
| DBxref | InterPro:IPR000743 |
| DBxref | InterPro:IPR012334 |
| DBxref | PFAM:PF00295 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| OGUI01000016.1 | supercontig | OGUI01000016.1:2100812..2103086 - |
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