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KJC3_000744-T1, KJC3_000744-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000744-T1
Unique NameKJC3_000744-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:1730161..1732018-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000744-T1 ID=KJC3_000744-T1|Name=KJC3_000744-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1858bp|location=Sequence derived from alignment at ch1:1730161..1732018- (Aspergillus niger KJC3)
CGCCATTTCAAGAGACCGCTCGGTCATCTCATTAAGTAGACACTCAAGTA
TCGTTTACTACATCGGCTTGTTGCCACGCCTAATACCTTTGTCCTGTAAC
TTCAGCTCTCCACCTTTTCATCAAACAACTCTCTTAATTTCACCTACGTT
GACGTGCCGTCCAAGTGCTCCATCATGAACCCCGAGTGGTAAGTGCCCTT
GATCGTCTGTATTTGGCCTACAGCTCATCAGGTTCTGGCGATTCTCCCCC
CTTGCCATGATGGCACTACGTCTTTTCATCCACAAATTTCTTGTTTCTTG
TTTTTCGTGCTAATTTGAATCGCTATTAGAGCCTCCACGATCCTCCGTCT
CTCCCATGCTTTACTTGGCCGGCGCGGCCCTCTGTGTGCGTATCGATCCA
TATGCTAATGATTTGGCTAGATACGATTATCTTTTCAAGTTGCTCCTCAT
CGGAGACTCTGGTGTCGGAAAGTCGTGCTTGCTCCTACGTTTTGCCGACG
ATACCTATACGGAGAGCTACATCTCCACCATCGGAGTTGACTTCGTACGT
ATCTGGCCTCTCATTATTCATCACAGCTGCTAGCAGTGAACTGCGTCATA
GATCCACATCTAACGTTCCAATACAGAAAATTCGTACCATCGAGCTGGAT
GGAAAGACGGTGAAACTCCAGATCGTAAGGCAGCCCCGTTCACAACAGTC
GCTCACCTGGCTTAACTAACGGGCGCTCTAGTGGGATACTGCAGGCCAGG
AACGTTTCCGGACAATCACGTCGTCTTACTACCGTGGTGCCCATGGCATC
TGTGTCGTCTACGATGTTACCGACATGGACTCTTTCAACAATGTGAAGCA
GTGGCTTCAAGAGATTGATCGCTACGCCACTGAAGGTGTCAATAAGCTCC
TTGTCGGAAACAAGAGCGATATGGAAGACAAAAAGGTCGTGGAATACACA
GTGGCTAAGGTATGTGGCCAGACCTTGGTGTGGGACTCTTCATTTCTGGC
AGAGTGGGTGATTGACGCAATGTGTTGTTGGTTTAGGAATTCGCCGACAG
CCTTGGGATCCCGTTCTTGGAAACCTCGGCGAAGAACGCTTCGAATGTCG
AGCAGGCTTTTTTGACAATGGCGAGGCAGATCAAGGAACGCATGGGCACT
GCGACTGTCAACAACAAGCCAACTGTGCAGGTTGGCCAAGGCCAGGGCGT
TCAATCCGGCTCCGCGGGCGGCTGCTGCTAGACTATTGATGATCCTAATC
CCGCGTTGCATTACGCCATATTGAGACTGTGTGAAAATTTGGTGATTAAA
GAAGAGGAGCGATGAGGGAGGCTACCTGCTGCACCCTGCTGCCGGGCAGT
CTTTCTCGAATGCCAGCATTATCTCAAATGTTCTATGCTGGTAATGGTCA
CCGGGAGTAGTTTTCTTTGTTATGCTTTAGAAGGCTTTCGTTTCGTCTTA
TACATGGTGCACTATGGATAATTTTGTGTCAGGTTTTCCCTTTCCTCCTC
TCGGTCATCTATCATCCCCTCCCTATCTTTTCCTGTCACTATTGTCTTGC
TCGTGGCCTTTCCCTAACTCGAAGCATTTTCTATCTGGTTCGTTGAATTT
TCTTTAGTTGGATCCGTTGCGTGATTATGTCTGGGTCAATTAATGCAGAA
GTTAATGATACTTAGTGAATATGGTTATCTGGCAAATCAAAATCAGAGCT
TACTCGCTTTCCCGCTTCATTTACTCGGACTTTACCGTTATGGTGGAAAA
AAAGTTGTAGGATATGTAGAGTACTTGCTAACGCTTCTTATCCTTGACTA
ATGGCAACTGTGTCGGATTTACACTTTCATTTATCTAGGACACATTGTCT
TGCTCTAG
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Coding sequence (CDS) from alignment at ch1:1730161..1732018-

>KJC3_000744-T1 ID=KJC3_000744-T1|Name=KJC3_000744-T1|organism=Aspergillus niger KJC3|type=CDS|length=3030bp|location=Sequence derived from alignment at ch1:1730161..1732018- (Aspergillus niger KJC3)
GAATTCGCCGACAGCCTTGGGATCCCGTTCTTGGAAACCTCGGCGAAGAA
CGCTTCGAATGTCGAGCAGGCTTTTTTGACAATGGCGAGGCAGATCAAGG
AACGCATGGGCACTGCGACTGTCAACAACAAGCCAACTGTGCAGGTTGGC
CAAGGCCAGGGCGTTCAATCCGGCTCCGCGGGCGGCTGCTGCTAGTGGGA
TACTGCAGGCCAGGAACGTTTCCGGACAATCACGTCGTCTTACTACCGTG
GTGCCCATGGCATCTGTGTCGTCTACGATGTTACCGACATGGACTCTTTC
AACAATGTGAAGCAGTGGCTTCAAGAGATTGATCGCTACGCCACTGAAGG
TGTCAATAAGCTCCTTGTCGGAAACAAGAGCGATATGGAAGACAAAAAGG
TCGTGGAATACACAGTGGCTAAGAAAATTCGTACCATCGAGCTGGATGGA
AAGACGGTGAAACTCCAGATCATACGATTATCTTTTCAAGTTGCTCCTCA
TCGGAGACTCTGGTGTCGGAAAGTCGTGCTTGCTCCTACGTTTTGCCGAC
GATACCTATACGGAGAGCTACATCTCCACCATCGGAGTTGACTTCATGAA
CCCCGAGAATTCGCCGACAGCCTTGGGATCCCGTTCTTGGAAACCTCGGC
GAAGAACGCTTCGAATGTCGAGCAGGCTTTTTTGACAATGGCGAGGCAGA
TCAAGGAACGCATGGGCACTGCGACTGTCAACAACAAGCCAACTGTGCAG
GTTGGCCAAGGCCAGGGCGTTCAATCCGGCTCCGCGGGCGGCTGCTGCTA
GTGGGATACTGCAGGCCAGGAACGTTTCCGGACAATCACGTCGTCTTACT
ACCGTGGTGCCCATGGCATCTGTGTCGTCTACGATGTTACCGACATGGAC
TCTTTCAACAATGTGAAGCAGTGGCTTCAAGAGATTGATCGCTACGCCAC
TGAAGGTGTCAATAAGCTCCTTGTCGGAAACAAGAGCGATATGGAAGACA
AAAAGGTCGTGGAATACACAGTGGCTAAGAAAATTCGTACCATCGAGCTG
GATGGAAAGACGGTGAAACTCCAGATCATACGATTATCTTTTCAAGTTGC
TCCTCATCGGAGACTCTGGTGTCGGAAAGTCGTGCTTGCTCCTACGTTTT
GCCGACGATACCTATACGGAGAGCTACATCTCCACCATCGGAGTTGACTT
CATGAACCCCGAGAATTCGCCGACAGCCTTGGGATCCCGTTCTTGGAAAC
CTCGGCGAAGAACGCTTCGAATGTCGAGCAGGCTTTTTTGACAATGGCGA
GGCAGATCAAGGAACGCATGGGCACTGCGACTGTCAACAACAAGCCAACT
GTGCAGGTTGGCCAAGGCCAGGGCGTTCAATCCGGCTCCGCGGGCGGCTG
CTGCTAGTGGGATACTGCAGGCCAGGAACGTTTCCGGACAATCACGTCGT
CTTACTACCGTGGTGCCCATGGCATCTGTGTCGTCTACGATGTTACCGAC
ATGGACTCTTTCAACAATGTGAAGCAGTGGCTTCAAGAGATTGATCGCTA
CGCCACTGAAGGTGTCAATAAGCTCCTTGTCGGAAACAAGAGCGATATGG
AAGACAAAAAGGTCGTGGAATACACAGTGGCTAAGAAAATTCGTACCATC
GAGCTGGATGGAAAGACGGTGAAACTCCAGATCATACGATTATCTTTTCA
AGTTGCTCCTCATCGGAGACTCTGGTGTCGGAAAGTCGTGCTTGCTCCTA
CGTTTTGCCGACGATACCTATACGGAGAGCTACATCTCCACCATCGGAGT
TGACTTCATGAACCCCGAGAATTCGCCGACAGCCTTGGGATCCCGTTCTT
GGAAACCTCGGCGAAGAACGCTTCGAATGTCGAGCAGGCTTTTTTGACAA
TGGCGAGGCAGATCAAGGAACGCATGGGCACTGCGACTGTCAACAACAAG
CCAACTGTGCAGGTTGGCCAAGGCCAGGGCGTTCAATCCGGCTCCGCGGG
CGGCTGCTGCTAGTGGGATACTGCAGGCCAGGAACGTTTCCGGACAATCA
CGTCGTCTTACTACCGTGGTGCCCATGGCATCTGTGTCGTCTACGATGTT
ACCGACATGGACTCTTTCAACAATGTGAAGCAGTGGCTTCAAGAGATTGA
TCGCTACGCCACTGAAGGTGTCAATAAGCTCCTTGTCGGAAACAAGAGCG
ATATGGAAGACAAAAAGGTCGTGGAATACACAGTGGCTAAGAAAATTCGT
ACCATCGAGCTGGATGGAAAGACGGTGAAACTCCAGATCATACGATTATC
TTTTCAAGTTGCTCCTCATCGGAGACTCTGGTGTCGGAAAGTCGTGCTTG
CTCCTACGTTTTGCCGACGATACCTATACGGAGAGCTACATCTCCACCAT
CGGAGTTGACTTCATGAACCCCGAGAATTCGCCGACAGCCTTGGGATCCC
GTTCTTGGAAACCTCGGCGAAGAACGCTTCGAATGTCGAGCAGGCTTTTT
TGACAATGGCGAGGCAGATCAAGGAACGCATGGGCACTGCGACTGTCAAC
AACAAGCCAACTGTGCAGGTTGGCCAAGGCCAGGGCGTTCAATCCGGCTC
CGCGGGCGGCTGCTGCTAGTGGGATACTGCAGGCCAGGAACGTTTCCGGA
CAATCACGTCGTCTTACTACCGTGGTGCCCATGGCATCTGTGTCGTCTAC
GATGTTACCGACATGGACTCTTTCAACAATGTGAAGCAGTGGCTTCAAGA
GATTGATCGCTACGCCACTGAAGGTGTCAATAAGCTCCTTGTCGGAAACA
AGAGCGATATGGAAGACAAAAAGGTCGTGGAATACACAGTGGCTAAGAAA
ATTCGTACCATCGAGCTGGATGGAAAGACGGTGAAACTCCAGATCATACG
ATTATCTTTTCAAGTTGCTCCTCATCGGAGACTCTGGTGTCGGAAAGTCG
TGCTTGCTCCTACGTTTTGCCGACGATACCTATACGGAGAGCTACATCTC
CACCATCGGAGTTGACTTCATGAACCCCGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005525GTP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
YPT1KJC3_000744Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000744-T1KJC3_000744-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000744-T1.cdsKJC3_000744-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000744-T1.utr3p1KJC3_000744-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000744-T1.exon5KJC3_000744-T1.exon5Aspergillus niger KJC3exon
KJC3_000744-T1.exon4KJC3_000744-T1.exon4Aspergillus niger KJC3exon
KJC3_000744-T1.exon3KJC3_000744-T1.exon3Aspergillus niger KJC3exon
KJC3_000744-T1.exon2KJC3_000744-T1.exon2Aspergillus niger KJC3exon
KJC3_000744-T1.exon1KJC3_000744-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000744-T1.utr5p1KJC3_000744-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR001806
DBxrefInterPro:IPR005225
DBxrefPFAM:PF08477
DBxrefPFAM:PF00071
DBxrefPFAM:PF01926
DBxrefPFAM:PF00025
ProductGTP-binding protein of the rab
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:1730161..1732018 -
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