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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:470050..471146- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001708-T1 ID=KJC3_001708-T1|Name=KJC3_001708-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1097bp|location=Sequence derived from alignment at ch2:470050..471146- (Aspergillus niger KJC3)
CAGCTTCAGAAATGACCCTACAACGAGGATAGAAACGTAAATTGCCATGA
CGCAGGTTTGACAAGGATTGTGCGAGAATACCAGGCTACATCAAAACATG
GTCATCGGCGTATCCTGATGGGCATCCTTGAGGCGTGCGAGTCAGCTCCA
CTTTCAGCCCTACGCAGCATCAGGCGTGACGTCACAACTTCTCGTTCCTT
ATGATCTTTTAAATCCCCTGATCGACCACCATCTGTTTGTTCTTCATTGT
CCAGACTCTGAAGTTTTTTCCTCCTTCTACTCTCCTCGAGACAGGCCTCA
TCCACCTCAAGAAAAACCTCCACCAATAAACTACATAATCCGCCATCATG
CCCGGAAAAGTGTATGCACACCATTGTTACACATTCTGAAAAGACAGTCA
CTAACTAACATCTCTACAACAGCGGCTGCTGCGAAATCATCATCGCCTTC
TTCCTCCCCTTTGTGGGTGTCTTCATGCGCACTGGATGCAGCTGTGATCT
CCTCATCAACATCTGTCTGTGTATCCTGGGTTGGGTACCCGGTGTCATCC
ACGCCTAGTATGTGTTGCTGCCCTTTTCTCCCGCCTTACATTCAACTGGG
AACACAAGCTGACGCGTGTCATAGCTACATCCTGGCCAACAAATAAACAA
CTCAATTGATAATATGGACATCTGTTTCTGATGTGTTGGTCGGTTCGGTG
AAATTCGCAACCCGGGCTATCTCCATTACGGGCGCTCTCGGCGTATCGAC
GGGGCCATTCATGATTTGCGACTATTATTAATGTTTACTTTTTCTGCTTT
TTTTGTATATGTATATATCCCACGGCAACAATTTTCATGACTGTTTGACT
TTGTGTGAAATTTTTATCGGCCAGTGGTGGTCTATGCACCGGCCCAGACT
TCGCTACGTAGGCAGCAATTTTCCCGTATATTAAAAGGCGGTGACTGGGC
GGTGAGCGGAGTTTTTGCTCAGTGTTGCTGTGGCTACGTCATGTTTTTGT
GGCTTGGATCTGCGCATCATAATTTGGGCGAGAACGAGAATAATAACGGT
AAGGGGCTATTTTTGGGATTTGATAAAGTTTGGAGTGAGGCCTCGAG back to topCoding sequence (CDS) from alignment at ch2:470050..471146- >KJC3_001708-T1 ID=KJC3_001708-T1|Name=KJC3_001708-T1|organism=Aspergillus niger KJC3|type=CDS|length=513bp|location=Sequence derived from alignment at ch2:470050..471146- (Aspergillus niger KJC3)
CTACATCCTGGCCAACAAATAACGGCTGCTGCGAAATCATCATCGCCTTC
TTCCTCCCCTTTGTGGGTGTCTTCATGCGCACTGGATGCAGCTGTGATCT
CCTCATCAACATCTGTCTGTGTATCCTGGGTTGGGTACCCGGTGTCATCC
ACGCCTAATGCCCGGAAAAGTCTACATCCTGGCCAACAAATAACGGCTGC
TGCGAAATCATCATCGCCTTCTTCCTCCCCTTTGTGGGTGTCTTCATGCG
CACTGGATGCAGCTGTGATCTCCTCATCAACATCTGTCTGTGTATCCTGG
GTTGGGTACCCGGTGTCATCCACGCCTAATGCCCGGAAAAGTCTACATCC
TGGCCAACAAATAACGGCTGCTGCGAAATCATCATCGCCTTCTTCCTCCC
CTTTGTGGGTGTCTTCATGCGCACTGGATGCAGCTGTGATCTCCTCATCA
ACATCTGTCTGTGTATCCTGGGTTGGGTACCCGGTGTCATCCACGCCTAA
TGCCCGGAAAAGT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001708-T1.utr3p1 | KJC3_001708-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001708-T1.utr5p1 | KJC3_001708-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_2.3 |
| DBxref | InterPro:IPR000612 |
| DBxref | PFAM:PF01679 |
| Product | plasma membrane proteolipid Pmp3 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:470050..471146 - |
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