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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:1817051..1818334- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002153-T1 ID=KJC3_002153-T1|Name=KJC3_002153-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1284bp|location=Sequence derived from alignment at ch2:1817051..1818334- (Aspergillus niger KJC3)
CATATATAAAGGCCTAGCCCTTCCAGTAAGCCAAACTCCAGTAAGCCAAA
CCCATTACACGTTTGTAGCACTAAATGAAAGCTCTCCTGGAAGAAAACAA
CTCAACACCATCATGAAACTCTACGACTCTCCCGCCCCCAACCCCATGGC
CGTCCGCCTGTTCATCCTCGAACGTGGCGGTCTCCAACTCGACGTCGAAG
TCGTTGACACTAAGACTCTTCAGAACCGACGCCTTCCTTATCGCGCTATT
AACCCTCGTGGAGAAGTTCCGGCTCTCCAACTCGATGACGGCACTATTCT
GACTGAGATTACGGCCCTTTACGAGTATCTGGACGAGATCGCCGTTGGAG
GCACCTCGCTGTTCGGAAATACGCCGGAACAGCGTGCCGAGACCCGCATG
TGGGTGAGGAGAATGGACCTGGAGATTTGTCAACTGGCTATTGCTTGGTT
CAGGAATGATCCTGCTACTATTGATCTCTACAAAGGCCATCGGATTCCAA
CGCCCGAGGCGAGGGTGAATCAAAAAGTCATGATTAATCAAGCGTTGAAT
ATGCTGGATGATCACTTGGAGGGGAAGACTTGGCTATGTGGGGATAGATT
CTCTGCTGCTGATGTTCACTTGTATGGATTGTTGAAGATGATGACCATGA
AGGCGTGTGGGTGGGTGCTGTTGCCAGGACGAGAGAATTTTCTGGCATAT
TGGAACAGAATGGATGAGCGGGAGGCTTCGAAGAAGGCCTTGCAGACCTT
CTCGGCCAGGGTTCAAGTGTGATGCACATACTGGGTCTTTAAGGTGAGTT
TATGGAGGATTATAACATTGATGCTTCGCAGCCGTGCTACAGAACTTGTG
GCGTCATGTTGTTTTGCAAATGGCTCCTGAGCCTATATAGACTAGACTTT
TAGACGTTTTACAGTTTTCTTCGGCGGGAACAAGCTGCCTTCTTCCTGTC
ATTGTCAGTGAAAATCCCTGTTATGTCGAGGCACTGGAGAAGGTCCTTGT
GTTTTGGGAAACTCATATATATTTTCCTCTTCCAATGTTCATTAAAGAGC
ATAATCGTTCCTCCTCCATGCGTGAAGTGGTTACTTCATCTCACTTGCTC
AGGTCATGTCGAAGCGGACAACGTTAGCATCGTCGAAAAAAATCACGAAA
AACGATCCCTGAGGAACCAAAAGCGACCAAAGGTCGTCGAATACCAGAAG
AGTGAATAATTCTTGGATAATCTATGACAGTATCAACACCCACAGAGCTC
CCTTTGAATGGCGCGTTCCTCCGTGCGCAATAGC back to topCoding sequence (CDS) from alignment at ch2:1817051..1818334- >KJC3_002153-T1 ID=KJC3_002153-T1|Name=KJC3_002153-T1|organism=Aspergillus niger KJC3|type=CDS|length=660bp|location=Sequence derived from alignment at ch2:1817051..1818334- (Aspergillus niger KJC3)
ATGAAACTCTACGACTCTCCCGCCCCCAACCCCATGGCCGTCCGCCTGTT
CATCCTCGAACGTGGCGGTCTCCAACTCGACGTCGAAGTCGTTGACACTA
AGACTCTTCAGAACCGACGCCTTCCTTATCGCGCTATTAACCCTCGTGGA
GAAGTTCCGGCTCTCCAACTCGATGACGGCACTATTCTGACTGAGATTAC
GGCCCTTTACGAGTATCTGGACGAGATCGCCGTTGGAGGCACCTCGCTGT
TCGGAAATACGCCGGAACAGCGTGCCGAGACCCGCATGTGGGTGAGGAGA
ATGGACCTGGAGATTTGTCAACTGGCTATTGCTTGGTTCAGGAATGATCC
TGCTACTATTGATCTCTACAAAGGCCATCGGATTCCAACGCCCGAGGCGA
GGGTGAATCAAAAAGTCATGATTAATCAAGCGTTGAATATGCTGGATGAT
CACTTGGAGGGGAAGACTTGGCTATGTGGGGATAGATTCTCTGCTGCTGA
TGTTCACTTGTATGGATTGTTGAAGATGATGACCATGAAGGCGTGTGGGT
GGGTGCTGTTGCCAGGACGAGAGAATTTTCTGGCATATTGGAACAGAATG
GATGAGCGGGAGGCTTCGAAGAAGGCCTTGCAGACCTTCTCGGCCAGGGT
TCAAGTGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002153-T1.utr5p1 | KJC3_002153-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036282 |
| DBxref | InterPro:IPR010987 |
| DBxref | InterPro:IPR040079 |
| DBxref | InterPro:IPR004045 |
| DBxref | InterPro:IPR004046 |
| DBxref | InterPro:IPR036249 |
| DBxref | PFAM:PF13417 |
| DBxref | PFAM:PF13409 |
| DBxref | PFAM:PF02798 |
| DBxref | PFAM:PF14497 |
| DBxref | PFAM:PF13410 |
| DBxref | PFAM:PF00043 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:1817051..1818334 - |
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