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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:2044168..2045759- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002238-T1 ID=KJC3_002238-T1|Name=KJC3_002238-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1592bp|location=Sequence derived from alignment at ch2:2044168..2045759- (Aspergillus niger KJC3)
TAGCAACAGGAGCGAGCGAGCGAGCGAATGCAGATAGCGGATAACATGTG
ACTTGCGCCCATGCAGATGTGGCGGTGCCGAGGCACGTGATTGTCACGAG
CCGCAACGGGGCCCCCGCCACAGCCCAGTCTTATCCCAGGGCGACTTCTC
TTATCTGCAAAACCTCAGATTTGCTCTCCCTCAGCCCGACCGCCACTCCA
CTTTGACGACTGTCATCATCCGGCGCACTTGCCATTCATTCATTCATCCT
CCGGTTCTCCACCAGGAATTAATCGCATTCCCCTTTTTACTTCTTCTAAT
TACCCAACAATGTCAGACGTCGCTGCCCTGGAGGCAGAGGTGAAGGAGTT
CAAGCTCCAGGTACGTGCTTGGCCATCACCGTCTGGTCCGTGACTAACCG
TCCCTCTCCCCCAGCTTGAAACCGTCCAATCGAGTTTGCAGGTAGACCCA
GACAACACGGAATTGCAGAGTCTCCAAACTGAGCTGGAAGAACTTATAAA
CCTCACCGAAACATCCATTGCCGAACTCAAACCTCCCGCGCCTCCCGTGT
CTCAGCCGCCGGCGTCCGCGGCCAAGGATAATAGGGCCAAGGATTCTTAC
GCATCTCAACCAACATACCGCAAACCGACGGTCGAACAAACGGACGAACC
GTCAACTCAGACCTCCTTTTCCGTTAACGAGCACGTTCTCGCCCGGTGGG
TGTCGGGCGACAACTCGTTCTACCCAGCGCGTATCACCTCCATCACCGGC
TCTGCGAGCAACCCCGTGTACCTCGTCTCGTTCAAGTCATATGGGACGGT
GGAAAATCTAACCTCCAAAGACATCAGGCCCATTTCCGGCAATGACTCGC
GAAAGCGCAAGGCTGATGCAAGCTCAGGCAATTCCTCATCACAATCTCCG
GCGCCGCCGCCGCCCCACTCGAGCGTGATCTCCGCCGCCGCGGACATTAA
CCCCGCGTTGGCCAACCAGGCGCGTAAGGAGCCGAGCAAGGTGAACGATG
GGCCGGCGCGCCCGGCCAAGGTGCCCCGGAAGGTGAAGGCCACGCGGGAG
CTTGAGGCGGGCAAGATGAAGTGGAAAGACTTTGCCAGCAAGGGGAAACT
GGGTCGCAAGGAGAGCATGTTCCGCACGGGCGACGGAGTAAATGCCCGAG
GTGAGTGGACTCTTCTGATAGAACACGTGCGACAGCAGACTGACTGCAGT
AGTGGGTTTCACTGGCTCTGGCCAGCAAATGCGCAAAGACCCTGGACGTT
CACGACACGTCTACCAGCAGGGCGAAGAGGAAGGCTACTAGCTGGGCTTA
AAGATGGATGGGCTTCACTCTGTTATTTTTCTGTCCCTACCGTGTGTCAC
ATCGCTAACGGGCTATGGTGTCAGATCTAGTGAAGCGAGCCAGTCGTACA
TACTATAAAATTTTGATATCCAGACGCATCATCTTGGTGATGTGATGCGA
CATTGTAGTAACTTATGTCCATGTCTACTCTTGAATTTCTTTGGTTCTAT
TTGTAGCGTGCCAGCTAGCTGAATACCCTGATGATGATCACCTGCCACTC
CACCAGCTACATATAAAGTGACGCCACGGATTTGTTATCCGT back to topCoding sequence (CDS) from alignment at ch2:2044168..2045759- >KJC3_002238-T1 ID=KJC3_002238-T1|Name=KJC3_002238-T1|organism=Aspergillus niger KJC3|type=CDS|length=2628bp|location=Sequence derived from alignment at ch2:2044168..2045759- (Aspergillus niger KJC3)
TGGGTTTCACTGGCTCTGGCCAGCAAATGCGCAAAGACCCTGGACGTTCA
CGACACGTCTACCAGCAGGGCGAAGAGGAAGGCTACTAGCTTGAAACCGT
CCAATCGAGTTTGCAGGTAGACCCAGACAACACGGAATTGCAGAGTCTCC
AAACTGAGCTGGAAGAACTTATAAACCTCACCGAAACATCCATTGCCGAA
CTCAAACCTCCCGCGCCTCCCGTGTCTCAGCCGCCGGCGTCCGCGGCCAA
GGATAATAGGGCCAAGGATTCTTACGCATCTCAACCAACATACCGCAAAC
CGACGGTCGAACAAACGGACGAACCGTCAACTCAGACCTCCTTTTCCGTT
AACGAGCACGTTCTCGCCCGGTGGGTGTCGGGCGACAACTCGTTCTACCC
AGCGCGTATCACCTCCATCACCGGCTCTGCGAGCAACCCCGTGTACCTCG
TCTCGTTCAAGTCATATGGGACGGTGGAAAATCTAACCTCCAAAGACATC
AGGCCCATTTCCGGCAATGACTCGCGAAAGCGCAAGGCTGATGCAAGCTC
AGGCAATTCCTCATCACAATCTCCGGCGCCGCCGCCGCCCCACTCGAGCG
TGATCTCCGCCGCCGCGGACATTAACCCCGCGTTGGCCAACCAGGCGCGT
AAGGAGCCGAGCAAGGTGAACGATGGGCCGGCGCGCCCGGCCAAGGTGCC
CCGGAAGGTGAAGGCCACGCGGGAGCTTGAGGCGGGCAAGATGAAGTGGA
AAGACTTTGCCAGCAAGGGGAAACTGGGTCGCAAGGAGAGCATGTTCCGC
ACGGGCGACGGAGTAAATGCCCGAGATGTCAGACGTCGCTGCCCTGGAGG
CAGAGGTGAAGGAGTTCAAGCTCCAGTGGGTTTCACTGGCTCTGGCCAGC
AAATGCGCAAAGACCCTGGACGTTCACGACACGTCTACCAGCAGGGCGAA
GAGGAAGGCTACTAGCTTGAAACCGTCCAATCGAGTTTGCAGGTAGACCC
AGACAACACGGAATTGCAGAGTCTCCAAACTGAGCTGGAAGAACTTATAA
ACCTCACCGAAACATCCATTGCCGAACTCAAACCTCCCGCGCCTCCCGTG
TCTCAGCCGCCGGCGTCCGCGGCCAAGGATAATAGGGCCAAGGATTCTTA
CGCATCTCAACCAACATACCGCAAACCGACGGTCGAACAAACGGACGAAC
CGTCAACTCAGACCTCCTTTTCCGTTAACGAGCACGTTCTCGCCCGGTGG
GTGTCGGGCGACAACTCGTTCTACCCAGCGCGTATCACCTCCATCACCGG
CTCTGCGAGCAACCCCGTGTACCTCGTCTCGTTCAAGTCATATGGGACGG
TGGAAAATCTAACCTCCAAAGACATCAGGCCCATTTCCGGCAATGACTCG
CGAAAGCGCAAGGCTGATGCAAGCTCAGGCAATTCCTCATCACAATCTCC
GGCGCCGCCGCCGCCCCACTCGAGCGTGATCTCCGCCGCCGCGGACATTA
ACCCCGCGTTGGCCAACCAGGCGCGTAAGGAGCCGAGCAAGGTGAACGAT
GGGCCGGCGCGCCCGGCCAAGGTGCCCCGGAAGGTGAAGGCCACGCGGGA
GCTTGAGGCGGGCAAGATGAAGTGGAAAGACTTTGCCAGCAAGGGGAAAC
TGGGTCGCAAGGAGAGCATGTTCCGCACGGGCGACGGAGTAAATGCCCGA
GATGTCAGACGTCGCTGCCCTGGAGGCAGAGGTGAAGGAGTTCAAGCTCC
AGTGGGTTTCACTGGCTCTGGCCAGCAAATGCGCAAAGACCCTGGACGTT
CACGACACGTCTACCAGCAGGGCGAAGAGGAAGGCTACTAGCTTGAAACC
GTCCAATCGAGTTTGCAGGTAGACCCAGACAACACGGAATTGCAGAGTCT
CCAAACTGAGCTGGAAGAACTTATAAACCTCACCGAAACATCCATTGCCG
AACTCAAACCTCCCGCGCCTCCCGTGTCTCAGCCGCCGGCGTCCGCGGCC
AAGGATAATAGGGCCAAGGATTCTTACGCATCTCAACCAACATACCGCAA
ACCGACGGTCGAACAAACGGACGAACCGTCAACTCAGACCTCCTTTTCCG
TTAACGAGCACGTTCTCGCCCGGTGGGTGTCGGGCGACAACTCGTTCTAC
CCAGCGCGTATCACCTCCATCACCGGCTCTGCGAGCAACCCCGTGTACCT
CGTCTCGTTCAAGTCATATGGGACGGTGGAAAATCTAACCTCCAAAGACA
TCAGGCCCATTTCCGGCAATGACTCGCGAAAGCGCAAGGCTGATGCAAGC
TCAGGCAATTCCTCATCACAATCTCCGGCGCCGCCGCCGCCCCACTCGAG
CGTGATCTCCGCCGCCGCGGACATTAACCCCGCGTTGGCCAACCAGGCGC
GTAAGGAGCCGAGCAAGGTGAACGATGGGCCGGCGCGCCCGGCCAAGGTG
CCCCGGAAGGTGAAGGCCACGCGGGAGCTTGAGGCGGGCAAGATGAAGTG
GAAAGACTTTGCCAGCAAGGGGAAACTGGGTCGCAAGGAGAGCATGTTCC
GCACGGGCGACGGAGTAAATGCCCGAGATGTCAGACGTCGCTGCCCTGGA
GGCAGAGGTGAAGGAGTTCAAGCTCCAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002238-T1.utr3p1 | KJC3_002238-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002238-T1.utr5p1 | KJC3_002238-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR041297 |
| DBxref | InterPro:IPR002999 |
| DBxref | PFAM:PF18115 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:2044168..2045759 - |
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