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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:3824859..3826134- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002878-T1 ID=KJC3_002878-T1|Name=KJC3_002878-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1276bp|location=Sequence derived from alignment at ch2:3824859..3826134- (Aspergillus niger KJC3)
ATATTCTCCCCGCCATCATCATTGATTGATTGCATTGACGTCGGACATTC
TCTGGATCGAACACATTCTTGTGCGCAGATCTTCATCATGCCGTTCGCGC
AACTCGTCATAGGGCCCCCGGGCGCCGGGAAGTCAACCTACTGCAATGGC
ATGCACCAGTTTCTTGGAGCTATTGGTCGCAAATGCTCCATTGTGAATCT
GGACCCCGCAAATGATAAAACATCCTATCCGTGTGCGCTGGACGTTCGCG
ACCTTGTCACGTTAGAGGAGATTATGAGTGAGGACCTGTTGGGACCTAAC
GGGGGTATTTTGTATGCGCTGGAAGAATTAGAGGAGAACTTTGACTGGCT
TGAGGAGGGGCTGAAGGATCTCGGAGGTATGCGCATTCTGCCGTCTGAAG
ATGTTACAGGATCAAACGCTAATGCATATTCTATGTGATAGAGGACTACG
TCCTGTTTGATTGCCCTGGCCAAGTTGAATTATTCACACACCACTCGTCC
CTACGAAACATATTCTTCAAATTGCAGAAGATGGGCTACAGAGTATGTCC
TACCCGTCCCATCCGGAGTAACATGCTATGCGATACTAACAAACGGACGA
TGCGCAGCTAATCGTGATCCATCTCATTGACTCCTACAACCTTACACTAC
CATCGATGTACATCTCCGCCCTCCTCCTCTCCCTCCGCGCCATGCTCCAA
ATGGACCTACCTCACCTGAACGTCCTCACCAAGATCGACAATCTATCGAA
CTATTCCCCATTGCCCTTCAACCTCGATTACTACACAGAAGTCCAAGACC
TCAGCTACCTTCTCCCGCACCTCGAAGCCGAGTCATCACGGCTATCACAT
GAGAAGTTCGGACCGCTCAATAACGCGATCATCGACCTAGTGGAGGAATT
CGGACTAGTGAGCTTCGAGACGCTAGCCGTGGAGGACAAGAAGAGCATGA
TGAATTTACTGCACGTTATCGACCGCGCTAGCGGTTATGTGTTCGGACCC
GCCGAGGGTGCAAACGACTCCATCTGGCAGGTTGCTGTCCGAGAAGGCCT
GGGACAGATGGACATCCGGGACGTGCAAGAGCGGTGGCTGGACGCGAAAG
ACACGTACGATGAGCACGAGCTTAAGCAGCTAGAGGAAGAAGCGAAAGCC
GCCGAAAAGACAGCCGAAGACGCATCAGCACAGAAACCCAATATGGACTT
CGATGACGACGAATACGACGATCTGGGGAGGGGGTCGATACCAGATGGTG
GTGTGAAGGTTATACGAAAATCATGA back to topCoding sequence (CDS) from alignment at ch2:3824859..3826134- >KJC3_002878-T1 ID=KJC3_002878-T1|Name=KJC3_002878-T1|organism=Aspergillus niger KJC3|type=CDS|length=3177bp|location=Sequence derived from alignment at ch2:3824859..3826134- (Aspergillus niger KJC3)
CTAATCGTGATCCATCTCATTGACTCCTACAACCTTACACTACCATCGAT
GTACATCTCCGCCCTCCTCCTCTCCCTCCGCGCCATGCTCCAAATGGACC
TACCTCACCTGAACGTCCTCACCAAGATCGACAATCTATCGAACTATTCC
CCATTGCCCTTCAACCTCGATTACTACACAGAAGTCCAAGACCTCAGCTA
CCTTCTCCCGCACCTCGAAGCCGAGTCATCACGGCTATCACATGAGAAGT
TCGGACCGCTCAATAACGCGATCATCGACCTAGTGGAGGAATTCGGACTA
GTGAGCTTCGAGACGCTAGCCGTGGAGGACAAGAAGAGCATGATGAATTT
ACTGCACGTTATCGACCGCGCTAGCGGTTATGTGTTCGGACCCGCCGAGG
GTGCAAACGACTCCATCTGGCAGGTTGCTGTCCGAGAAGGCCTGGGACAG
ATGGACATCCGGGACGTGCAAGAGCGGTGGCTGGACGCGAAAGACACGTA
CGATGAGCACGAGCTTAAGCAGCTAGAGGAAGAAGCGAAAGCCGCCGAAA
AGACAGCCGAAGACGCATCAGCACAGAAACCCAATATGGACTTCGATGAC
GACGAATACGACGATCTGGGGAGGGGGTCGATACCAGATGGTGGTGTGAA
GGTTATACGAAAATCATGAAGGACTACGTCCTGTTTGATTGCCCTGGCCA
AGTTGAATTATTCACACACCACTCGTCCCTACGAAACATATTCTTCAAAT
TGCAGAAGATGGGCTACAGAATGCCGTTCGCGCAACTCGTCATAGGGCCC
CCGGGCGCCGGGAAGTCAACCTACTGCAATGGCATGCACCAGTTTCTTGG
AGCTATTGGTCGCAAATGCTCCATTGTGAATCTGGACCCCGCAAATGATA
AAACATCCTATCCGTGTGCGCTGGACGTTCGCGACCTTGTCACGTTAGAG
GAGATTATGAGTGAGGACCTGTTGGGACCTAACGGGGGTATTTTGTATGC
GCTGGAAGAATTAGAGGAGAACTTTGACTGGCTTGAGGAGGGGCTGAAGG
ATCTCGGAGCTAATCGTGATCCATCTCATTGACTCCTACAACCTTACACT
ACCATCGATGTACATCTCCGCCCTCCTCCTCTCCCTCCGCGCCATGCTCC
AAATGGACCTACCTCACCTGAACGTCCTCACCAAGATCGACAATCTATCG
AACTATTCCCCATTGCCCTTCAACCTCGATTACTACACAGAAGTCCAAGA
CCTCAGCTACCTTCTCCCGCACCTCGAAGCCGAGTCATCACGGCTATCAC
ATGAGAAGTTCGGACCGCTCAATAACGCGATCATCGACCTAGTGGAGGAA
TTCGGACTAGTGAGCTTCGAGACGCTAGCCGTGGAGGACAAGAAGAGCAT
GATGAATTTACTGCACGTTATCGACCGCGCTAGCGGTTATGTGTTCGGAC
CCGCCGAGGGTGCAAACGACTCCATCTGGCAGGTTGCTGTCCGAGAAGGC
CTGGGACAGATGGACATCCGGGACGTGCAAGAGCGGTGGCTGGACGCGAA
AGACACGTACGATGAGCACGAGCTTAAGCAGCTAGAGGAAGAAGCGAAAG
CCGCCGAAAAGACAGCCGAAGACGCATCAGCACAGAAACCCAATATGGAC
TTCGATGACGACGAATACGACGATCTGGGGAGGGGGTCGATACCAGATGG
TGGTGTGAAGGTTATACGAAAATCATGAAGGACTACGTCCTGTTTGATTG
CCCTGGCCAAGTTGAATTATTCACACACCACTCGTCCCTACGAAACATAT
TCTTCAAATTGCAGAAGATGGGCTACAGAATGCCGTTCGCGCAACTCGTC
ATAGGGCCCCCGGGCGCCGGGAAGTCAACCTACTGCAATGGCATGCACCA
GTTTCTTGGAGCTATTGGTCGCAAATGCTCCATTGTGAATCTGGACCCCG
CAAATGATAAAACATCCTATCCGTGTGCGCTGGACGTTCGCGACCTTGTC
ACGTTAGAGGAGATTATGAGTGAGGACCTGTTGGGACCTAACGGGGGTAT
TTTGTATGCGCTGGAAGAATTAGAGGAGAACTTTGACTGGCTTGAGGAGG
GGCTGAAGGATCTCGGAGCTAATCGTGATCCATCTCATTGACTCCTACAA
CCTTACACTACCATCGATGTACATCTCCGCCCTCCTCCTCTCCCTCCGCG
CCATGCTCCAAATGGACCTACCTCACCTGAACGTCCTCACCAAGATCGAC
AATCTATCGAACTATTCCCCATTGCCCTTCAACCTCGATTACTACACAGA
AGTCCAAGACCTCAGCTACCTTCTCCCGCACCTCGAAGCCGAGTCATCAC
GGCTATCACATGAGAAGTTCGGACCGCTCAATAACGCGATCATCGACCTA
GTGGAGGAATTCGGACTAGTGAGCTTCGAGACGCTAGCCGTGGAGGACAA
GAAGAGCATGATGAATTTACTGCACGTTATCGACCGCGCTAGCGGTTATG
TGTTCGGACCCGCCGAGGGTGCAAACGACTCCATCTGGCAGGTTGCTGTC
CGAGAAGGCCTGGGACAGATGGACATCCGGGACGTGCAAGAGCGGTGGCT
GGACGCGAAAGACACGTACGATGAGCACGAGCTTAAGCAGCTAGAGGAAG
AAGCGAAAGCCGCCGAAAAGACAGCCGAAGACGCATCAGCACAGAAACCC
AATATGGACTTCGATGACGACGAATACGACGATCTGGGGAGGGGGTCGAT
ACCAGATGGTGGTGTGAAGGTTATACGAAAATCATGAAGGACTACGTCCT
GTTTGATTGCCCTGGCCAAGTTGAATTATTCACACACCACTCGTCCCTAC
GAAACATATTCTTCAAATTGCAGAAGATGGGCTACAGAATGCCGTTCGCG
CAACTCGTCATAGGGCCCCCGGGCGCCGGGAAGTCAACCTACTGCAATGG
CATGCACCAGTTTCTTGGAGCTATTGGTCGCAAATGCTCCATTGTGAATC
TGGACCCCGCAAATGATAAAACATCCTATCCGTGTGCGCTGGACGTTCGC
GACCTTGTCACGTTAGAGGAGATTATGAGTGAGGACCTGTTGGGACCTAA
CGGGGGTATTTTGTATGCGCTGGAAGAATTAGAGGAGAACTTTGACTGGC
TTGAGGAGGGGCTGAAGGATCTCGGAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002878-T1.utr5p1 | KJC3_002878-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR004130 |
| DBxref | PFAM:PF03029 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:3824859..3826134 - |
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