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KJC3_003289-T1, KJC3_003289-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003289-T1
Unique NameKJC3_003289-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:1541694..1543044-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003289-T1 ID=KJC3_003289-T1|Name=KJC3_003289-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1351bp|location=Sequence derived from alignment at ch3:1541694..1543044- (Aspergillus niger KJC3)
CCCACTTCCACTCTTCTGGTCCTCAGGGACATCTATTTAAATCTCCCCTT
AACCGGACATCTCCTATCGCATCGAGTGAAAGACCACCGCGGTTAGCGAG
ATCCCAACATGCCCAAGAACAAGGGAAAGGTGAGTTTGTGCTGCATCCCA
CCCGGGTACCCCGCCTTACAGATTTTCGCTTTGTTTTACGCTTGACTCTG
GAGCGCACCTCATGCCACCATATCCCACCTCAACGACACACTTCAGCCCA
GAAGATGTGGGATAAGGCGGCATAGAGGCTGTTATACCAATAGAGCATTG
CAGAACGAAGCGAACCTGCGCCACAAGTCTGTACGCATGTCTAGGACAGT
TTTGCTGACGTATCTGCATTCAAACAGGGCGGTAAGAACCGTCGTCGTGG
AAAGAACGAGAACGACAACGAGAAGCGTGAGCTTGTCTTCAAGGAAGAAG
GCCAGGAGTATGCGCAGGTCGTGAAGATGCTTGGTAACGGCCGTCTGGAG
GCACTTTGCTTCGATGGCGAGAAGCGTCTGGCTCACATCCGTGGCAAGCT
CCGCAAGAAGGTCTGGATCAACCAGGGCGACATCATCCTTCTCTCGCTGC
GTGACTACCAAGACGAAAAGGGCGACGTCATCATGAAGTACACCGCCGAT
GAGGCCAGAAGTCTCAAGGCCTACGGCGAGTTGCCCGAGCACGCCAAGAT
CAACGAGACCGACACCTACGGCCACGAGGGCTTCGAGGACAACGTCGAGT
TCGACGAGGACCGCGAGAGCGAAGACGAGAAGGAGATCGATGTCGACGAG
CTCTAAACGCCTCTTTCAGGGGCACGATCTCATATCCCTACCGGAGCGAC
TGGGTTCGGTTCTGTTTTTCTCGACTCATTAAAACTATTGTTTTCTTCAA
AAAGCCTTCATGGGAAGAATCTCCCCGAGTATTCTTCCGAACAAGCTGTT
ACTTGCTTTGAAAGGAAAGAAATCGGACGGCTTGTGCATGCTGTGTGTGT
GTGCTAGTCGAGATTTTCCCGCGAAGGTGTCTCGAGTAAAGGAATCAGGG
CGGCAGCACCTCCCCGCTCCGCATAGGCGCGTTCTGCCTTTGCTGCGCCC
GGTGCGGCTCCGTGTAGTTCGGGGTATGGATCAGTAACAGGGGTTACGCC
GGGGGATGTTCTTCATGGTGGGGGTTATCGGTTTTCTGGACATATTCGTG
TTCCATCATGAGGGTGTTCTCGGGTTAGCTACAGAAGGATGGCTTACTGC
GCACGAGAAGGCCGCACGGTCTGTGGCGTGTTGGCGATACTTATGTTTGC
TCCCTGTTTTATTCGCTATTCCTTTTCATTACGCTTCGTTCTTGACAAAA
G
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Coding sequence (CDS) from alignment at ch3:1541694..1543044-

>KJC3_003289-T1 ID=KJC3_003289-T1|Name=KJC3_003289-T1|organism=Aspergillus niger KJC3|type=CDS|length=900bp|location=Sequence derived from alignment at ch3:1541694..1543044- (Aspergillus niger KJC3)
GGCGGTAAGAACCGTCGTCGTGGAAAGAACGAGAACGACAACGAGAAGCG
TGAGCTTGTCTTCAAGGAAGAAGGCCAGGAGTATGCGCAGGTCGTGAAGA
TGCTTGGTAACGGCCGTCTGGAGGCACTTTGCTTCGATGGCGAGAAGCGT
CTGGCTCACATCCGTGGCAAGCTCCGCAAGAAGGTCTGGATCAACCAGGG
CGACATCATCCTTCTCTCGCTGCGTGACTACCAAGACGAAAAGGGCGACG
TCATCATGAAGTACACCGCCGATGAGGCCAGAAGTCTCAAGGCCTACGGC
GAGTTGCCCGAGCACGCCAAGATCAACGAGACCGACACCTACGGCCACGA
GGGCTTCGAGGACAACGTCGAGTTCGACGAGGACCGCGAGAGCGAAGACG
AGAAGGAGATCGATGTCGACGAGCTCTAAATGCCCAAGAACAAGGGAAAG
GGCGGTAAGAACCGTCGTCGTGGAAAGAACGAGAACGACAACGAGAAGCG
TGAGCTTGTCTTCAAGGAAGAAGGCCAGGAGTATGCGCAGGTCGTGAAGA
TGCTTGGTAACGGCCGTCTGGAGGCACTTTGCTTCGATGGCGAGAAGCGT
CTGGCTCACATCCGTGGCAAGCTCCGCAAGAAGGTCTGGATCAACCAGGG
CGACATCATCCTTCTCTCGCTGCGTGACTACCAAGACGAAAAGGGCGACG
TCATCATGAAGTACACCGCCGATGAGGCCAGAAGTCTCAAGGCCTACGGC
GAGTTGCCCGAGCACGCCAAGATCAACGAGACCGACACCTACGGCCACGA
GGGCTTCGAGGACAACGTCGAGTTCGACGAGGACCGCGAGAGCGAAGACG
AGAAGGAGATCGATGTCGACGAGCTCTAAATGCCCAAGAACAAGGGAAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EIF1AYKJC3_003289Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003289-T1KJC3_003289-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003289-T1.cdsKJC3_003289-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003289-T1.utr3p1KJC3_003289-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003289-T1.exon2KJC3_003289-T1.exon2Aspergillus niger KJC3exon
KJC3_003289-T1.exon1KJC3_003289-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003289-T1.utr5p1KJC3_003289-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG092652Y6
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR018104
DBxrefInterPro:IPR006196
DBxrefInterPro:IPR001253
DBxrefPFAM:PF01176
Product Y-chromosomal
ProductEukaryotic translation initiation factor 1A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:1541694..1543044 -
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