|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:3380031..3382512- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003899-T1 ID=KJC3_003899-T1|Name=KJC3_003899-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2482bp|location=Sequence derived from alignment at ch3:3380031..3382512- (Aspergillus niger KJC3)
CTTCGTGGCCTCTTTTCTCTTCCTTCTTCTTCTTCTTCTTCCCCCTCTCC
CCCGTTTTTCCCTCTTTGCTGACCAGGTTCTTTATAAACGGGTCGCAATG
CCGGAACAACGTCAGCGTAGGGAGGAGTCGGAGCAAGGCGTGCGTATGCT
TCAATCTGCTTTGTTTGTGGTACAGGATTCGATGGGTTAGCTGACAGTCG
CTTTTCCTTGCTTTAGTCCGGCTTCAAGGGTGCCCTTCAGGGTCTGGCTT
TTTTCTTGTTGGCGCAATTTGTGATGAGCCAGTTCTTTGGGTCAAAGCAA
AATGCGGGCTCAGGAGCAAAGCCTAGTGATGTGCCTTCTTTCAACACGCG
TCCGCCTCGCAGCGAAGTGTCCAACTACAGCCCCGTTCCCGATCTCGTTA
CCCCGATTTGGCCTTCCGATAGTGCTCTGGACCTGAATATCTACGTTTCG
CCTTCAATTGTCGTTCCTGGCTTCAAGTCCTTCCCATCGGATTCCCTCGT
TCTGGAGGAAAAGAACTTTACTATCGGAAACTACAGTGACACTAGAGAAA
TTGACACGACCATCAAGATCCCCAAGGAGGTTCAACGCAATGGAACTCTC
TGGGCGCATTTCTTTGTCGGACTCACCGGACACCAGCTCGACCCTACCGC
TAAGGATTACAGTACCGATAGTGCCGTTCATTTCTTCCGCCCCTTGAACC
AGTACCTCCCCAAGAAGAAAGTGAAGAAGTTGAAAAACCTGCTTGCTTCG
TCGGAGGAAACCGAGGAGGAAGAAGATGATGGCACTCCCGATGTCTCCAT
TGCGTCTTACTACCACCCGAACTTCACCGTGTCCGTTGTTCCTGACGCCG
GTGCGCAGAAGTACCGGCAGGTTCACCCTGCTGTTAGACAGCATATGCAG
CTCGAAGCGACTGGCGCGCGGGATGCCACTGGGCAGAATGGCTGGTACTA
TCCGATTGTGTTCCTCAACACCTTCTGGCAGCTCAGAAGTCACATGATGG
AGCTCAACTCGACCGTCGAGACCGTTCCTATGCGTATCACTCTCAACAAC
CTGCAGAACTGGAAGTTCAGCATGATGGCAAGTGTTGATGAGAATGCGAA
GGCAAATGCCAAGCAGGCGGCTTTTGGTGGTCAGACACCCGGTGGCGGGG
ACGGTACTGAGTTCGAAATGGTCAAGGAAGTCCTGCTTGACACGAACATC
TACCTGCTCTGCACAACTGGTGTGGTTACTATCCTGCATATGGTCTTCGA
AACTCTGGCCTTCAAGAACGATATTGTAAGCTTATCACTCCATTTCCCCT
TTCGAATCCTTCTTGTGTCAAACGCTAATGGGTATGTACTCTGAATAGTC
TCACTGGCGCAAGAAGAAGGATGTTGTTGGTACCTCCGTTCGTACCATCC
TGGCGAATGTCTTCATGCAGGCGGTCATCTTCCTCTACTTGATGGACAAC
AGTGAGAACACTTCTTGGATGATCCTCGCAAGTCAAGGTTTTGGTATCCT
GCTAGAAGCCTGGAAGATCACCAAGACAGTAGACGTGCGCTTGCGTCCTC
CGCCAGCTGGATCATTCTTCTCATTCCTCCCTTATGTTATTGTCTTTGAG
GACAAGCACAAGCTCAGTGAGACGGAGCAGAAGACCAAAGAATATGATGA
GATCGCATTCCGCTGGCTGTATATCATTGCTGTTCCGCTCTTGGCCGCAT
ATGCTGTGTACAGCCTGATCTACAACACGCACAAGTCGTGGTACTCCTAT
GTCATTGAGACCCTTGTTGGAAGTGTCTACGCCTACGGCTTCCTGATGAT
GGTGCCTAGTCTGTACATCAACTATCGACTGAAGGTATGTTCCCTTCTTA
ACCATCCATGTAATAATTTTTGCTAACTTGCTATTGCAGTCTGTCGCTCA
TATGCCCGGAAAGGCTTTGACGTACAAGTTCCTCAACACCTTCATCGACG
ACCTTTTTGCTTTCACTGTCAAGATGCCTTGGCTCCACAGATTGGCAACC
TTCCGTGATGATATCATTTTCTTCATCTGGCTCTACCAAGGCTGGAAGTA
CAAGGTTGATTACAAGCGTGTCAACGAATTTGGTCAGGGTGGCGACAGTG
ATGAGGAGGAAGAGGAGCCTACACCGGCTGAGGCGCCCAAGGCCAAGGAG
ACAGCGACTGCCTCTGGGAAGGCAAGCTCTAAGCAGCCGGCTAGAAAGAG
GAAGTAGACGTGATTGGCTTCATTCTTCCTGGAAGTATTCCCAGACTACT
GTTCATAGTTGAGATGTTGGAGACATTGTGGGCCATGGCTTTTTGTTCCT
CCCACGATGTCATTACTACCAATCGCATAATGAGGAGCTGCATACAGCTC
AAGACCATCTAGATTGAGATCGTCCGGTGCGAAGTAGAGTAACTCAATAC
GCCATTTGAGGAAGAGACGGCAAGTATCCAGTCTGGCGCATATGAAGATG
TTTGACTGTAGGCACCTCATCTATAAATAAGT back to topCoding sequence (CDS) from alignment at ch3:3380031..3382512- >KJC3_003899-T1 ID=KJC3_003899-T1|Name=KJC3_003899-T1|organism=Aspergillus niger KJC3|type=CDS|length=7620bp|location=Sequence derived from alignment at ch3:3380031..3382512- (Aspergillus niger KJC3)
TCTGTCGCTCATATGCCCGGAAAGGCTTTGACGTACAAGTTCCTCAACAC
CTTCATCGACGACCTTTTTGCTTTCACTGTCAAGATGCCTTGGCTCCACA
GATTGGCAACCTTCCGTGATGATATCATTTTCTTCATCTGGCTCTACCAA
GGCTGGAAGTACAAGGTTGATTACAAGCGTGTCAACGAATTTGGTCAGGG
TGGCGACAGTGATGAGGAGGAAGAGGAGCCTACACCGGCTGAGGCGCCCA
AGGCCAAGGAGACAGCGACTGCCTCTGGGAAGGCAAGCTCTAAGCAGCCG
GCTAGAAAGAGGAAGTAGTCTCACTGGCGCAAGAAGAAGGATGTTGTTGG
TACCTCCGTTCGTACCATCCTGGCGAATGTCTTCATGCAGGCGGTCATCT
TCCTCTACTTGATGGACAACAGTGAGAACACTTCTTGGATGATCCTCGCA
AGTCAAGGTTTTGGTATCCTGCTAGAAGCCTGGAAGATCACCAAGACAGT
AGACGTGCGCTTGCGTCCTCCGCCAGCTGGATCATTCTTCTCATTCCTCC
CTTATGTTATTGTCTTTGAGGACAAGCACAAGCTCAGTGAGACGGAGCAG
AAGACCAAAGAATATGATGAGATCGCATTCCGCTGGCTGTATATCATTGC
TGTTCCGCTCTTGGCCGCATATGCTGTGTACAGCCTGATCTACAACACGC
ACAAGTCGTGGTACTCCTATGTCATTGAGACCCTTGTTGGAAGTGTCTAC
GCCTACGGCTTCCTGATGATGGTGCCTAGTCTGTACATCAACTATCGACT
GAAGTCCGGCTTCAAGGGTGCCCTTCAGGGTCTGGCTTTTTTCTTGTTGG
CGCAATTTGTGATGAGCCAGTTCTTTGGGTCAAAGCAAAATGCGGGCTCA
GGAGCAAAGCCTAGTGATGTGCCTTCTTTCAACACGCGTCCGCCTCGCAG
CGAAGTGTCCAACTACAGCCCCGTTCCCGATCTCGTTACCCCGATTTGGC
CTTCCGATAGTGCTCTGGACCTGAATATCTACGTTTCGCCTTCAATTGTC
GTTCCTGGCTTCAAGTCCTTCCCATCGGATTCCCTCGTTCTGGAGGAAAA
GAACTTTACTATCGGAAACTACAGTGACACTAGAGAAATTGACACGACCA
TCAAGATCCCCAAGGAGGTTCAACGCAATGGAACTCTCTGGGCGCATTTC
TTTGTCGGACTCACCGGACACCAGCTCGACCCTACCGCTAAGGATTACAG
TACCGATAGTGCCGTTCATTTCTTCCGCCCCTTGAACCAGTACCTCCCCA
AGAAGAAAGTGAAGAAGTTGAAAAACCTGCTTGCTTCGTCGGAGGAAACC
GAGGAGGAAGAAGATGATGGCACTCCCGATGTCTCCATTGCGTCTTACTA
CCACCCGAACTTCACCGTGTCCGTTGTTCCTGACGCCGGTGCGCAGAAGT
ACCGGCAGGTTCACCCTGCTGTTAGACAGCATATGCAGCTCGAAGCGACT
GGCGCGCGGGATGCCACTGGGCAGAATGGCTGGTACTATCCGATTGTGTT
CCTCAACACCTTCTGGCAGCTCAGAAGTCACATGATGGAGCTCAACTCGA
CCGTCGAGACCGTTCCTATGCGTATCACTCTCAACAACCTGCAGAACTGG
AAGTTCAGCATGATGGCAAGTGTTGATGAGAATGCGAAGGCAAATGCCAA
GCAGGCGGCTTTTGGTGGTCAGACACCCGGTGGCGGGGACGGTACTGAGT
TCGAAATGGTCAAGGAAGTCCTGCTTGACACGAACATCTACCTGCTCTGC
ACAACTGGTGTGGTTACTATCCTGCATATGGTCTTCGAAACTCTGGCCTT
CAAGAACGATATTATGCCGGAACAACGTCAGCGTAGGGAGGAGTCGGAGC
AAGGCTCTGTCGCTCATATGCCCGGAAAGGCTTTGACGTACAAGTTCCTC
AACACCTTCATCGACGACCTTTTTGCTTTCACTGTCAAGATGCCTTGGCT
CCACAGATTGGCAACCTTCCGTGATGATATCATTTTCTTCATCTGGCTCT
ACCAAGGCTGGAAGTACAAGGTTGATTACAAGCGTGTCAACGAATTTGGT
CAGGGTGGCGACAGTGATGAGGAGGAAGAGGAGCCTACACCGGCTGAGGC
GCCCAAGGCCAAGGAGACAGCGACTGCCTCTGGGAAGGCAAGCTCTAAGC
AGCCGGCTAGAAAGAGGAAGTAGTCTCACTGGCGCAAGAAGAAGGATGTT
GTTGGTACCTCCGTTCGTACCATCCTGGCGAATGTCTTCATGCAGGCGGT
CATCTTCCTCTACTTGATGGACAACAGTGAGAACACTTCTTGGATGATCC
TCGCAAGTCAAGGTTTTGGTATCCTGCTAGAAGCCTGGAAGATCACCAAG
ACAGTAGACGTGCGCTTGCGTCCTCCGCCAGCTGGATCATTCTTCTCATT
CCTCCCTTATGTTATTGTCTTTGAGGACAAGCACAAGCTCAGTGAGACGG
AGCAGAAGACCAAAGAATATGATGAGATCGCATTCCGCTGGCTGTATATC
ATTGCTGTTCCGCTCTTGGCCGCATATGCTGTGTACAGCCTGATCTACAA
CACGCACAAGTCGTGGTACTCCTATGTCATTGAGACCCTTGTTGGAAGTG
TCTACGCCTACGGCTTCCTGATGATGGTGCCTAGTCTGTACATCAACTAT
CGACTGAAGTCCGGCTTCAAGGGTGCCCTTCAGGGTCTGGCTTTTTTCTT
GTTGGCGCAATTTGTGATGAGCCAGTTCTTTGGGTCAAAGCAAAATGCGG
GCTCAGGAGCAAAGCCTAGTGATGTGCCTTCTTTCAACACGCGTCCGCCT
CGCAGCGAAGTGTCCAACTACAGCCCCGTTCCCGATCTCGTTACCCCGAT
TTGGCCTTCCGATAGTGCTCTGGACCTGAATATCTACGTTTCGCCTTCAA
TTGTCGTTCCTGGCTTCAAGTCCTTCCCATCGGATTCCCTCGTTCTGGAG
GAAAAGAACTTTACTATCGGAAACTACAGTGACACTAGAGAAATTGACAC
GACCATCAAGATCCCCAAGGAGGTTCAACGCAATGGAACTCTCTGGGCGC
ATTTCTTTGTCGGACTCACCGGACACCAGCTCGACCCTACCGCTAAGGAT
TACAGTACCGATAGTGCCGTTCATTTCTTCCGCCCCTTGAACCAGTACCT
CCCCAAGAAGAAAGTGAAGAAGTTGAAAAACCTGCTTGCTTCGTCGGAGG
AAACCGAGGAGGAAGAAGATGATGGCACTCCCGATGTCTCCATTGCGTCT
TACTACCACCCGAACTTCACCGTGTCCGTTGTTCCTGACGCCGGTGCGCA
GAAGTACCGGCAGGTTCACCCTGCTGTTAGACAGCATATGCAGCTCGAAG
CGACTGGCGCGCGGGATGCCACTGGGCAGAATGGCTGGTACTATCCGATT
GTGTTCCTCAACACCTTCTGGCAGCTCAGAAGTCACATGATGGAGCTCAA
CTCGACCGTCGAGACCGTTCCTATGCGTATCACTCTCAACAACCTGCAGA
ACTGGAAGTTCAGCATGATGGCAAGTGTTGATGAGAATGCGAAGGCAAAT
GCCAAGCAGGCGGCTTTTGGTGGTCAGACACCCGGTGGCGGGGACGGTAC
TGAGTTCGAAATGGTCAAGGAAGTCCTGCTTGACACGAACATCTACCTGC
TCTGCACAACTGGTGTGGTTACTATCCTGCATATGGTCTTCGAAACTCTG
GCCTTCAAGAACGATATTATGCCGGAACAACGTCAGCGTAGGGAGGAGTC
GGAGCAAGGCTCTGTCGCTCATATGCCCGGAAAGGCTTTGACGTACAAGT
TCCTCAACACCTTCATCGACGACCTTTTTGCTTTCACTGTCAAGATGCCT
TGGCTCCACAGATTGGCAACCTTCCGTGATGATATCATTTTCTTCATCTG
GCTCTACCAAGGCTGGAAGTACAAGGTTGATTACAAGCGTGTCAACGAAT
TTGGTCAGGGTGGCGACAGTGATGAGGAGGAAGAGGAGCCTACACCGGCT
GAGGCGCCCAAGGCCAAGGAGACAGCGACTGCCTCTGGGAAGGCAAGCTC
TAAGCAGCCGGCTAGAAAGAGGAAGTAGTCTCACTGGCGCAAGAAGAAGG
ATGTTGTTGGTACCTCCGTTCGTACCATCCTGGCGAATGTCTTCATGCAG
GCGGTCATCTTCCTCTACTTGATGGACAACAGTGAGAACACTTCTTGGAT
GATCCTCGCAAGTCAAGGTTTTGGTATCCTGCTAGAAGCCTGGAAGATCA
CCAAGACAGTAGACGTGCGCTTGCGTCCTCCGCCAGCTGGATCATTCTTC
TCATTCCTCCCTTATGTTATTGTCTTTGAGGACAAGCACAAGCTCAGTGA
GACGGAGCAGAAGACCAAAGAATATGATGAGATCGCATTCCGCTGGCTGT
ATATCATTGCTGTTCCGCTCTTGGCCGCATATGCTGTGTACAGCCTGATC
TACAACACGCACAAGTCGTGGTACTCCTATGTCATTGAGACCCTTGTTGG
AAGTGTCTACGCCTACGGCTTCCTGATGATGGTGCCTAGTCTGTACATCA
ACTATCGACTGAAGTCCGGCTTCAAGGGTGCCCTTCAGGGTCTGGCTTTT
TTCTTGTTGGCGCAATTTGTGATGAGCCAGTTCTTTGGGTCAAAGCAAAA
TGCGGGCTCAGGAGCAAAGCCTAGTGATGTGCCTTCTTTCAACACGCGTC
CGCCTCGCAGCGAAGTGTCCAACTACAGCCCCGTTCCCGATCTCGTTACC
CCGATTTGGCCTTCCGATAGTGCTCTGGACCTGAATATCTACGTTTCGCC
TTCAATTGTCGTTCCTGGCTTCAAGTCCTTCCCATCGGATTCCCTCGTTC
TGGAGGAAAAGAACTTTACTATCGGAAACTACAGTGACACTAGAGAAATT
GACACGACCATCAAGATCCCCAAGGAGGTTCAACGCAATGGAACTCTCTG
GGCGCATTTCTTTGTCGGACTCACCGGACACCAGCTCGACCCTACCGCTA
AGGATTACAGTACCGATAGTGCCGTTCATTTCTTCCGCCCCTTGAACCAG
TACCTCCCCAAGAAGAAAGTGAAGAAGTTGAAAAACCTGCTTGCTTCGTC
GGAGGAAACCGAGGAGGAAGAAGATGATGGCACTCCCGATGTCTCCATTG
CGTCTTACTACCACCCGAACTTCACCGTGTCCGTTGTTCCTGACGCCGGT
GCGCAGAAGTACCGGCAGGTTCACCCTGCTGTTAGACAGCATATGCAGCT
CGAAGCGACTGGCGCGCGGGATGCCACTGGGCAGAATGGCTGGTACTATC
CGATTGTGTTCCTCAACACCTTCTGGCAGCTCAGAAGTCACATGATGGAG
CTCAACTCGACCGTCGAGACCGTTCCTATGCGTATCACTCTCAACAACCT
GCAGAACTGGAAGTTCAGCATGATGGCAAGTGTTGATGAGAATGCGAAGG
CAAATGCCAAGCAGGCGGCTTTTGGTGGTCAGACACCCGGTGGCGGGGAC
GGTACTGAGTTCGAAATGGTCAAGGAAGTCCTGCTTGACACGAACATCTA
CCTGCTCTGCACAACTGGTGTGGTTACTATCCTGCATATGGTCTTCGAAA
CTCTGGCCTTCAAGAACGATATTATGCCGGAACAACGTCAGCGTAGGGAG
GAGTCGGAGCAAGGCTCTGTCGCTCATATGCCCGGAAAGGCTTTGACGTA
CAAGTTCCTCAACACCTTCATCGACGACCTTTTTGCTTTCACTGTCAAGA
TGCCTTGGCTCCACAGATTGGCAACCTTCCGTGATGATATCATTTTCTTC
ATCTGGCTCTACCAAGGCTGGAAGTACAAGGTTGATTACAAGCGTGTCAA
CGAATTTGGTCAGGGTGGCGACAGTGATGAGGAGGAAGAGGAGCCTACAC
CGGCTGAGGCGCCCAAGGCCAAGGAGACAGCGACTGCCTCTGGGAAGGCA
AGCTCTAAGCAGCCGGCTAGAAAGAGGAAGTAGTCTCACTGGCGCAAGAA
GAAGGATGTTGTTGGTACCTCCGTTCGTACCATCCTGGCGAATGTCTTCA
TGCAGGCGGTCATCTTCCTCTACTTGATGGACAACAGTGAGAACACTTCT
TGGATGATCCTCGCAAGTCAAGGTTTTGGTATCCTGCTAGAAGCCTGGAA
GATCACCAAGACAGTAGACGTGCGCTTGCGTCCTCCGCCAGCTGGATCAT
TCTTCTCATTCCTCCCTTATGTTATTGTCTTTGAGGACAAGCACAAGCTC
AGTGAGACGGAGCAGAAGACCAAAGAATATGATGAGATCGCATTCCGCTG
GCTGTATATCATTGCTGTTCCGCTCTTGGCCGCATATGCTGTGTACAGCC
TGATCTACAACACGCACAAGTCGTGGTACTCCTATGTCATTGAGACCCTT
GTTGGAAGTGTCTACGCCTACGGCTTCCTGATGATGGTGCCTAGTCTGTA
CATCAACTATCGACTGAAGTCCGGCTTCAAGGGTGCCCTTCAGGGTCTGG
CTTTTTTCTTGTTGGCGCAATTTGTGATGAGCCAGTTCTTTGGGTCAAAG
CAAAATGCGGGCTCAGGAGCAAAGCCTAGTGATGTGCCTTCTTTCAACAC
GCGTCCGCCTCGCAGCGAAGTGTCCAACTACAGCCCCGTTCCCGATCTCG
TTACCCCGATTTGGCCTTCCGATAGTGCTCTGGACCTGAATATCTACGTT
TCGCCTTCAATTGTCGTTCCTGGCTTCAAGTCCTTCCCATCGGATTCCCT
CGTTCTGGAGGAAAAGAACTTTACTATCGGAAACTACAGTGACACTAGAG
AAATTGACACGACCATCAAGATCCCCAAGGAGGTTCAACGCAATGGAACT
CTCTGGGCGCATTTCTTTGTCGGACTCACCGGACACCAGCTCGACCCTAC
CGCTAAGGATTACAGTACCGATAGTGCCGTTCATTTCTTCCGCCCCTTGA
ACCAGTACCTCCCCAAGAAGAAAGTGAAGAAGTTGAAAAACCTGCTTGCT
TCGTCGGAGGAAACCGAGGAGGAAGAAGATGATGGCACTCCCGATGTCTC
CATTGCGTCTTACTACCACCCGAACTTCACCGTGTCCGTTGTTCCTGACG
CCGGTGCGCAGAAGTACCGGCAGGTTCACCCTGCTGTTAGACAGCATATG
CAGCTCGAAGCGACTGGCGCGCGGGATGCCACTGGGCAGAATGGCTGGTA
CTATCCGATTGTGTTCCTCAACACCTTCTGGCAGCTCAGAAGTCACATGA
TGGAGCTCAACTCGACCGTCGAGACCGTTCCTATGCGTATCACTCTCAAC
AACCTGCAGAACTGGAAGTTCAGCATGATGGCAAGTGTTGATGAGAATGC
GAAGGCAAATGCCAAGCAGGCGGCTTTTGGTGGTCAGACACCCGGTGGCG
GGGACGGTACTGAGTTCGAAATGGTCAAGGAAGTCCTGCTTGACACGAAC
ATCTACCTGCTCTGCACAACTGGTGTGGTTACTATCCTGCATATGGTCTT
CGAAACTCTGGCCTTCAAGAACGATATTATGCCGGAACAACGTCAGCGTA
GGGAGGAGTCGGAGCAAGGC back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003899-T1.utr3p1 | KJC3_003899-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003899-T1.utr5p1 | KJC3_003899-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR008429 |
| DBxref | PFAM:PF05602 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:3380031..3382512 - |
|
