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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:4228270..4229953+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004211-T1 ID=KJC3_004211-T1|Name=KJC3_004211-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1684bp|location=Sequence derived from alignment at ch3:4228270..4229953+ (Aspergillus niger KJC3)
CTGGTCTTCCTCTATGTCGCGTCGGGCTGTTCTCTTTCCATTAATGTGAT
TCAGAGGACATACACCTTATATATTCTTCCAGAAGGGCATATCCGTGCTT
GCTCAACTGACCATGACCAGCAAGTCTGCCGGGCTCTCCGCAGCCGAACC
GATATTTCCACAAATTCCACGTGTCGCCCTAGTCCCGCAAGACGATGCCT
CGTCCCCATTGTCAAGTCTGGAGTTGCATTCCATTGAACCGATAGGGGCC
AATACGCCGCATAGTAGGCGCACAAGGCATGCCGGGTCAACAAAACCCTC
CGAAGTCGACGAGATGTTCAACGTCGTGCAGTCAGCAGCAGCAGAGAACT
ATGGAGCTCAAGACACAAATAGGAAAACAGCCTCGATACACCCGCGCAGG
AACACGATCTGGCGACTAGCTAGCGCGTGCCTGATGAACTTTGGCAACGG
AATGAACGACAGTGCACCCGGTGCCCTAATCCCTTATATTGAGGATGATT
ACGGGATTGGCTACGCCATCATCTCACTGATCTTCATCGCCAACGCCGTC
GGATTCGTTCTTGCCGCGCCCCTTACTCACACAATCCAAGCCCGAATCGG
CCACGCCAAAAGCTATGCTCTCTCGATGAGTCTCGTCACAGCGGGCTACG
TTGCCATCGTATGCCACCCGCCCTTTCCGGTCGTTGTCACGGCGTTTCTC
CTCCTCGGCTTCGGGATGGCGTTAAGCATCGCGCTTAACAATGTCTTCTG
CGCAAACCTAAACAGCTATGCCACAGCACTGGGCTTTTTCTCCGGTGCGT
ATGGCATCGGTGGGGTGATCTCCCCACTATTGGCCACGGCCATGGTGTCA
CACGGCATCCGCTGGACATACTTCTACTTCATCACACTGGTGATTTCGAC
GTTGAATATGTTGCTTGCGGCTGTCGTCTTTCGCAATTATAAGGACGAAG
GTGCCGCTTCGAGGGCGCCCACTCAGCAAACATCCCCCTCCCTTGCTTCT
CAGACGGCCCAGCCAAACGAGAATGATTCCCATAACTCCCACACTCGCCT
CCAAACCCTGAAACGAGCCATCCGGAATCTCACAACGATCCTAGGATCAC
TCTTTATCTTCGCATACCAAGGAGCCGAAGTCTCTATTTCCGGCTGGATC
GTCTCATTCCTCATCAACTACCGAGGAGGTGATTCGCGACGTGTCGGCTA
CGTGAGCGCTGGCTTCTGGGCCGGAATTACCCTCGGGCGCTTCCTCCTTG
TATACCCGGCAAACCGAATTGGTGAGAAGCTTGCCGTAGGACTGCTGGTT
GTCGGAGCGATAGCGTTCCAGCTCATGACTTGGCTGATCCCCAACATTGT
CGGCGAAGCGGTGGCGGTGGCGGTCGTGGGCTTGCTGCTAGGGCCCATGT
ATCCATGCTCGACGGCCGTGTTTGCGAAACTACTACCCCGGAGCATTCAG
CTGACTAGCATGAGCTTCATCACTGCGCTGGGAAGTAGCGGGGGTGCAGT
ATTTCCCTTTCTGACGGGTATTCTGTCACAAGAGGTGGGAACGATAGTCC
TGCATCCAATTTGTTTGGCGCTCTATGCAGCGATGGTTGTTTGTTGGTGC
TTTTTGCCTGCGATTTCGAAGAGATCGGAGTAGGGTCGTTCGCTATAAAT
TTCGTACTGAATGTGATCAATTTCATATAACTAG back to topCoding sequence (CDS) from alignment at ch3:4228270..4229953+ >KJC3_004211-T1 ID=KJC3_004211-T1|Name=KJC3_004211-T1|organism=Aspergillus niger KJC3|type=CDS|length=1521bp|location=Sequence derived from alignment at ch3:4228270..4229953+ (Aspergillus niger KJC3)
ATGACCAGCAAGTCTGCCGGGCTCTCCGCAGCCGAACCGATATTTCCACA
AATTCCACGTGTCGCCCTAGTCCCGCAAGACGATGCCTCGTCCCCATTGT
CAAGTCTGGAGTTGCATTCCATTGAACCGATAGGGGCCAATACGCCGCAT
AGTAGGCGCACAAGGCATGCCGGGTCAACAAAACCCTCCGAAGTCGACGA
GATGTTCAACGTCGTGCAGTCAGCAGCAGCAGAGAACTATGGAGCTCAAG
ACACAAATAGGAAAACAGCCTCGATACACCCGCGCAGGAACACGATCTGG
CGACTAGCTAGCGCGTGCCTGATGAACTTTGGCAACGGAATGAACGACAG
TGCACCCGGTGCCCTAATCCCTTATATTGAGGATGATTACGGGATTGGCT
ACGCCATCATCTCACTGATCTTCATCGCCAACGCCGTCGGATTCGTTCTT
GCCGCGCCCCTTACTCACACAATCCAAGCCCGAATCGGCCACGCCAAAAG
CTATGCTCTCTCGATGAGTCTCGTCACAGCGGGCTACGTTGCCATCGTAT
GCCACCCGCCCTTTCCGGTCGTTGTCACGGCGTTTCTCCTCCTCGGCTTC
GGGATGGCGTTAAGCATCGCGCTTAACAATGTCTTCTGCGCAAACCTAAA
CAGCTATGCCACAGCACTGGGCTTTTTCTCCGGTGCGTATGGCATCGGTG
GGGTGATCTCCCCACTATTGGCCACGGCCATGGTGTCACACGGCATCCGC
TGGACATACTTCTACTTCATCACACTGGTGATTTCGACGTTGAATATGTT
GCTTGCGGCTGTCGTCTTTCGCAATTATAAGGACGAAGGTGCCGCTTCGA
GGGCGCCCACTCAGCAAACATCCCCCTCCCTTGCTTCTCAGACGGCCCAG
CCAAACGAGAATGATTCCCATAACTCCCACACTCGCCTCCAAACCCTGAA
ACGAGCCATCCGGAATCTCACAACGATCCTAGGATCACTCTTTATCTTCG
CATACCAAGGAGCCGAAGTCTCTATTTCCGGCTGGATCGTCTCATTCCTC
ATCAACTACCGAGGAGGTGATTCGCGACGTGTCGGCTACGTGAGCGCTGG
CTTCTGGGCCGGAATTACCCTCGGGCGCTTCCTCCTTGTATACCCGGCAA
ACCGAATTGGTGAGAAGCTTGCCGTAGGACTGCTGGTTGTCGGAGCGATA
GCGTTCCAGCTCATGACTTGGCTGATCCCCAACATTGTCGGCGAAGCGGT
GGCGGTGGCGGTCGTGGGCTTGCTGCTAGGGCCCATGTATCCATGCTCGA
CGGCCGTGTTTGCGAAACTACTACCCCGGAGCATTCAGCTGACTAGCATG
AGCTTCATCACTGCGCTGGGAAGTAGCGGGGGTGCAGTATTTCCCTTTCT
GACGGGTATTCTGTCACAAGAGGTGGGAACGATAGTCCTGCATCCAATTT
GTTTGGCGCTCTATGCAGCGATGGTTGTTTGTTGGTGCTTTTTGCCTGCG
ATTTCGAAGAGATCGGAGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0022857 | transmembrane transporter activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004211-T1.utr5p1 | KJC3_004211-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004211-T1.utr3p1 | KJC3_004211-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_3.8 |
| Note | SMCOG1106:major facilitator transporter |
| DBxref | InterPro:IPR036259 |
| DBxref | InterPro:IPR020846 |
| DBxref | InterPro:IPR011701 |
| DBxref | PFAM:PF07690 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:4228270..4229953 + |
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