You are here

Home

KJC3_004439-T1, KJC3_004439-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004439-T1
Unique NameKJC3_004439-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:5290387..5291577+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004439-T1 ID=KJC3_004439-T1|Name=KJC3_004439-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1191bp|location=Sequence derived from alignment at ch3:5290387..5291577+ (Aspergillus niger KJC3)
TTCTTCACATCACTCCCCTTTTTCATCTTCAATTTCCCACTCAATCCACC
TCATCAATACACCTCAAAATGGCAAAAACCCCCATCCTCATTCTCGACGG
CGGTCTCGGCACCTCCCTCCAAGACCACTACAACATTACCTTCAGCAGCA
GCACCACCCCTCTCTGGTCCTCGCACCTAATGATCTCCGACCCCTCGACC
CTCCTCTCCTGCCAACGCGACTTCACCACCACCGCCGCCGTCGACGTCCT
CCTAACTGCCACCTACCAAGTCTCTCCGGAGGGCTTCCAGCGCACAAAAA
CCCCTTCCCACCCGACGGGAATCCCCCGCGAGAGTATCGCCGGTTACCTT
CGCACCGCCCTCGACGTCGCCGGACAAGCTGTGCAGAATACTTCCGCCTC
CGTGGCGCTAAGTCTAGGTCCCTATGGCGCGTGCATGATCCCGGGACAAG
AGTATAGTGGGAAGTATGACGGGGAACATGATACCGAGGAGAAGCTGTGG
AGGTGGCATACGGACCGGTTGGGACTTTTTAATGATGAGGCGATGGAGGG
GATGAGGTTGGGAGAGAGGGTGAAGTATATTGCTATGGAGACGGTGCCGA
GGATTGATGAGGTGAGGGCTGTGAGGAGGGCTGTGGGATCTTCTAGGTTT
TGTGAGGGGATCCCGTTTTGGGTGGCTTGTGTTTTTCCGATTGAGGATAA
GGATACCCTGCCGGATGGAAGTACCGTTGATGAGGTGGTGGAGGCGGCGT
TGTTGCCGATTGAGGGGGGTGCTACGCCGTGGGGAATTGGGATTAATTGT
ACGAAGCTTCATAAGTTGCCCCGGTTGGTGAAATTGTTTGGGGATGCTGT
GGAGAGGTTGTTGAGGGATGGGCGTATTCAGGAGAGGCCTGCGTTGGTGC
TGTATCCGGATGGCACGCAGGGGGAGGTTTATAATACTGCTACGCAGACG
TGGGAAAAGGTTCAAGATAAGAGTGGTGCGGCTGATTCGGTAAGTGAACC
TTTTGGATGTTGGTTGTGATATTGAAGAGATATATGTGCTGACTGATTAG
CGACCCTGGGAGGTGCAATTGGCACAGGTGGTCAATGACGCTAGCGCGAC
TGGCCAGTTCAGCTCTATCCTTGTTGGCGGTTGCTGCAAGGCTTCGTTCA
ATGATATCAAGAGGCTTCGCGAACAGCTCCGCCCGCAATAA
back to top

Coding sequence (CDS) from alignment at ch3:5290387..5291577+

>KJC3_004439-T1 ID=KJC3_004439-T1|Name=KJC3_004439-T1|organism=Aspergillus niger KJC3|type=CDS|length=2124bp|location=Sequence derived from alignment at ch3:5290387..5291577+ (Aspergillus niger KJC3)
ATGGCAAAAACCCCCATCCTCATTCTCGACGGCGGTCTCGGCACCTCCCT
CCAAGACCACTACAACATTACCTTCAGCAGCAGCACCACCCCTCTCTGGT
CCTCGCACCTAATGATCTCCGACCCCTCGACCCTCCTCTCCTGCCAACGC
GACTTCACCACCACCGCCGCCGTCGACGTCCTCCTAACTGCCACCTACCA
AGTCTCTCCGGAGGGCTTCCAGCGCACAAAAACCCCTTCCCACCCGACGG
GAATCCCCCGCGAGAGTATCGCCGGTTACCTTCGCACCGCCCTCGACGTC
GCCGGACAAGCTGTGCAGAATACTTCCGCCTCCGTGGCGCTAAGTCTAGG
TCCCTATGGCGCGTGCATGATCCCGGGACAAGAGTATAGTGGGAAGTATG
ACGGGGAACATGATACCGAGGAGAAGCTGTGGAGGTGGCATACGGACCGG
TTGGGACTTTTTAATGATGAGGCGATGGAGGGGATGAGGTTGGGAGAGAG
GGTGAAGTATATTGCTATGGAGACGGTGCCGAGGATTGATGAGGTGAGGG
CTGTGAGGAGGGCTGTGGGATCTTCTAGGTTTTGTGAGGGGATCCCGTTT
TGGGTGGCTTGTGTTTTTCCGATTGAGGATAAGGATACCCTGCCGGATGG
AAGTACCGTTGATGAGGTGGTGGAGGCGGCGTTGTTGCCGATTGAGGGGG
GTGCTACGCCGTGGGGAATTGGGATTAATTGTACGAAGCTTCATAAGTTG
CCCCGGTTGGTGAAATTGTTTGGGGATGCTGTGGAGAGGTTGTTGAGGGA
TGGGCGTATTCAGGAGAGGCCTGCGTTGGTGCTGTATCCGGATGGCACGC
AGGGGGAGGTTTATAATACTGCTACGCAGACGTGGGAAAAGGTTCAAGAT
AAGAGTGGTGCGGCTGATTCGCGACCCTGGGAGGTGCAATTGGCACAGGT
GGTCAATGACGCTAGCGCGACTGGCCAGTTCAGCTCTATCCTTGTTGGCG
GTTGCTGCAAGGCTTCGTTCAATGATATCAAGAGGCTTCGCGAACAGCTC
CGCCCGCAATAAATGGCAAAAACCCCCATCCTCATTCTCGACGGCGGTCT
CGGCACCTCCCTCCAAGACCACTACAACATTACCTTCAGCAGCAGCACCA
CCCCTCTCTGGTCCTCGCACCTAATGATCTCCGACCCCTCGACCCTCCTC
TCCTGCCAACGCGACTTCACCACCACCGCCGCCGTCGACGTCCTCCTAAC
TGCCACCTACCAAGTCTCTCCGGAGGGCTTCCAGCGCACAAAAACCCCTT
CCCACCCGACGGGAATCCCCCGCGAGAGTATCGCCGGTTACCTTCGCACC
GCCCTCGACGTCGCCGGACAAGCTGTGCAGAATACTTCCGCCTCCGTGGC
GCTAAGTCTAGGTCCCTATGGCGCGTGCATGATCCCGGGACAAGAGTATA
GTGGGAAGTATGACGGGGAACATGATACCGAGGAGAAGCTGTGGAGGTGG
CATACGGACCGGTTGGGACTTTTTAATGATGAGGCGATGGAGGGGATGAG
GTTGGGAGAGAGGGTGAAGTATATTGCTATGGAGACGGTGCCGAGGATTG
ATGAGGTGAGGGCTGTGAGGAGGGCTGTGGGATCTTCTAGGTTTTGTGAG
GGGATCCCGTTTTGGGTGGCTTGTGTTTTTCCGATTGAGGATAAGGATAC
CCTGCCGGATGGAAGTACCGTTGATGAGGTGGTGGAGGCGGCGTTGTTGC
CGATTGAGGGGGGTGCTACGCCGTGGGGAATTGGGATTAATTGTACGAAG
CTTCATAAGTTGCCCCGGTTGGTGAAATTGTTTGGGGATGCTGTGGAGAG
GTTGTTGAGGGATGGGCGTATTCAGGAGAGGCCTGCGTTGGTGCTGTATC
CGGATGGCACGCAGGGGGAGGTTTATAATACTGCTACGCAGACGTGGGAA
AAGGTTCAAGATAAGAGTGGTGCGGCTGATTCGCGACCCTGGGAGGTGCA
ATTGGCACAGGTGGTCAATGACGCTAGCGCGACTGGCCAGTTCAGCTCTA
TCCTTGTTGGCGGTTGCTGCAAGGCTTCGTTCAATGATATCAAGAGGCTT
CGCGAACAGCTCCGCCCGCAATAA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004439KJC3_004439Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004439-T1.utr5p1KJC3_004439-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004439-T1.exon1KJC3_004439-T1.exon1Aspergillus niger KJC3exon
KJC3_004439-T1.exon2KJC3_004439-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004439-T1.cdsKJC3_004439-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004439-T1KJC3_004439-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036589
DBxrefInterPro:IPR003726
DBxrefPFAM:PF02574
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:5290387..5291577 +
Powered by Drupal