You are here

Home

KJC3_004804-T1, KJC3_004804-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004804-T1
Unique NameKJC3_004804-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:762317..763574+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004804-T1 ID=KJC3_004804-T1|Name=KJC3_004804-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1258bp|location=Sequence derived from alignment at ch4:762317..763574+ (Aspergillus niger KJC3)
CAACAGACAGCAGCATAGACGCTTGACGATTCACGCATATCGCTGAAGGT
AAGACTGGCTGTTTCTTTTTATTCTTTGCGTCGGCAGTTTGTTCTCTTGA
GCTTGTTCCGAACTTTATGGAGGGGCAATTCATGTAGTGAGGGGCAATAC
TTTTTTTCTGCAGCAGAAAGATGGAGAAGAAGAGATCAGAACATCATTGC
GAGGACAGCGCAAGCGGGAAATCTATTGCTACATATTAGTTTCTTTCGCA
AGCCGCGACATGTTCTACTCGATCTGCCTGGCTCTTCTTTCATACGAAGA
AAGACAGTGGCTGCACGATCTTAACTGATATCGCATACCCCTCCATCCAA
CCCACTGCAACACCACTAACTTCCAAACCTCCGCACCAGAGATCAGAGAC
CCAAAGCTAACACGAACCCAGAAACTAAAGACACAAGATACCCACACCTC
CCAACTCCAATTCTCCATCTACTACTACTCAACTTCACAACCAACAAAAT
GGTCACCCTAACCCCCGACACAATCGACGACCTAATCTACTCCGCCCGCG
CCGGCGAACTCCAAGATCTCCAAACCGACCTCACCACCCTCGCAACCCAA
ACCTCCACGACCCCGGCGCACATCATCGCCGCAGCAATCGACACCGCTCC
GCAAGAAGAGGGCGGAAGTGGCTCGAGTCTGTTGCATTATCCTGCTGCGA
ATGGCAACCTGGGTACGAAATATATCCACTCCTGCTCCAGAAGCCTAATG
ACAATACAACTGATATGATTGGTTTTATGTATATATATAGAAATCCTCAC
CTACCTCCTCACCACCCTCACGACCCTCCCCAGCCGCGATGAGATCAACA
AGATTCTCAACCACAGAAACTACTCCGGAAACACGCCCTTGCACTGGGCG
GCGCTGAACACGCACCTCGAGTGCGTGAAGGCGCTTGTAGAGGCCGGTGC
GGATGTCGGGGTGAAGAATGATGCGGGGCTGGATGCGGTGTTTTTGGCGG
AGCGGGCGGATTGGAAGACTCAGGAGGAAGGAACGGATGATAATGGGGAT
GAGGAGGTGGAGGTGGAGATTGGTGGTGAGGGTGAGCAGAAGCAGGATGC
TGGGGAGATGACGAGGGGGAGACAGGTTGTGGAGTGGTTGTTGAGTTCGG
AGAAGGCGGCGGTGTCGTTGGAGAGTGCGGCTAGTAAGGATGAGAAGAAG
GATGGAGAGGGGGAGAAGATGGATACGACGAATTAATTGACCTTATTGGC
TGGCTAGT
back to top

Coding sequence (CDS) from alignment at ch4:762317..763574+

>KJC3_004804-T1 ID=KJC3_004804-T1|Name=KJC3_004804-T1|organism=Aspergillus niger KJC3|type=CDS|length=1320bp|location=Sequence derived from alignment at ch4:762317..763574+ (Aspergillus niger KJC3)
ATGGTCACCCTAACCCCCGACACAATCGACGACCTAATCTACTCCGCCCG
CGCCGGCGAACTCCAAGATCTCCAAACCGACCTCACCACCCTCGCAACCC
AAACCTCCACGACCCCGGCGCACATCATCGCCGCAGCAATCGACACCGCT
CCGCAAGAAGAGGGCGGAAGTGGCTCGAGTCTGTTGCATTATCCTGCTGC
GAATGGCAACCTGGAAATCCTCACCTACCTCCTCACCACCCTCACGACCC
TCCCCAGCCGCGATGAGATCAACAAGATTCTCAACCACAGAAACTACTCC
GGAAACACGCCCTTGCACTGGGCGGCGCTGAACACGCACCTCGAGTGCGT
GAAGGCGCTTGTAGAGGCCGGTGCGGATGTCGGGGTGAAGAATGATGCGG
GGCTGGATGCGGTGTTTTTGGCGGAGCGGGCGGATTGGAAGACTCAGGAG
GAAGGAACGGATGATAATGGGGATGAGGAGGTGGAGGTGGAGATTGGTGG
TGAGGGTGAGCAGAAGCAGGATGCTGGGGAGATGACGAGGGGGAGACAGG
TTGTGGAGTGGTTGTTGAGTTCGGAGAAGGCGGCGGTGTCGTTGGAGAGT
GCGGCTAGTAAGGATGAGAAGAAGGATGGAGAGGGGGAGAAGATGGATAC
GACGAATTAAATGGTCACCCTAACCCCCGACACAATCGACGACCTAATCT
ACTCCGCCCGCGCCGGCGAACTCCAAGATCTCCAAACCGACCTCACCACC
CTCGCAACCCAAACCTCCACGACCCCGGCGCACATCATCGCCGCAGCAAT
CGACACCGCTCCGCAAGAAGAGGGCGGAAGTGGCTCGAGTCTGTTGCATT
ATCCTGCTGCGAATGGCAACCTGGAAATCCTCACCTACCTCCTCACCACC
CTCACGACCCTCCCCAGCCGCGATGAGATCAACAAGATTCTCAACCACAG
AAACTACTCCGGAAACACGCCCTTGCACTGGGCGGCGCTGAACACGCACC
TCGAGTGCGTGAAGGCGCTTGTAGAGGCCGGTGCGGATGTCGGGGTGAAG
AATGATGCGGGGCTGGATGCGGTGTTTTTGGCGGAGCGGGCGGATTGGAA
GACTCAGGAGGAAGGAACGGATGATAATGGGGATGAGGAGGTGGAGGTGG
AGATTGGTGGTGAGGGTGAGCAGAAGCAGGATGCTGGGGAGATGACGAGG
GGGAGACAGGTTGTGGAGTGGTTGTTGAGTTCGGAGAAGGCGGCGGTGTC
GTTGGAGAGTGCGGCTAGTAAGGATGAGAAGAAGGATGGAGAGGGGGAGA
AGATGGATACGACGAATTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004804KJC3_004804Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004804-T1KJC3_004804-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004804-T1.utr5p1KJC3_004804-T1.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_004804-T1.utr5p2KJC3_004804-T1.utr5p2Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004804-T1.exon1KJC3_004804-T1.exon1Aspergillus niger KJC3exon
KJC3_004804-T1.exon2KJC3_004804-T1.exon2Aspergillus niger KJC3exon
KJC3_004804-T1.exon3KJC3_004804-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004804-T1.cdsKJC3_004804-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004804-T1.utr3p1KJC3_004804-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036770
DBxrefInterPro:IPR020683
DBxrefInterPro:IPR002110
DBxrefPFAM:PF13857
DBxrefPFAM:PF13637
DBxrefPFAM:PF13606
DBxrefPFAM:PF12796
DBxrefPFAM:PF00023
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:762317..763574 +
Powered by Drupal