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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:795033..799612+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004818-T1 ID=KJC3_004818-T1|Name=KJC3_004818-T1|organism=Aspergillus niger KJC3|type=mRNA|length=4580bp|location=Sequence derived from alignment at ch4:795033..799612+ (Aspergillus niger KJC3)
CTTGTCTTAGCCTCTGTGACTCCTTTCTTTGGGTATCTTTAAACCGCCTT
CCTCTCTGTTGACCAGAAGGGCAATGCATTTCATGTGCATGGTGCGCAGA
CCAACCTTCGTTTGATTTATTGAGCCAACCATTTGTTTACCTGGTTCCCA
GTTTTATCTAGATGCAAAAGGGAGATACAGAGATACAATTCGACCTTTGG
ATAGAACAAGAACGCATCACTTCTTTGCAACGTACCAGTTTAGGAACCAC
CAGTGCACGAAGAGACACCGTCACTTGCCTATCGACGCCGCAGAATGACT
TTCCCCCGTACCCCAATTAGGAGTGGCCGGGAATTGAACAAGTTGATCGA
TTCGATAAACGAGCAATTTGATTTGGACATCCCCAATCCCCTCAACTACT
CTCCATCTATCGGTGAAAATAACAAGTCACTTGGCTGGAGCCTCTATGGC
CGGATTCGAGTGTTATACTTCAACCGCAAGGTGGACTTGAATCGGATCTT
CAATGACTTCGAGGAGTGGCTTGCCTCCCAGTCGGCGGTGCTGCCTGCTG
GGGATGGTCGCTGGGGACATATACCAGGCTCATTCGCAAACACCTCGAGA
AATATCTTTATCAACAACGTGAGCAGTACTATCTCAAAGGAGGAGCGCCA
ACGATATCTGGAAAGATTGTTCAATGACGAGCTCTATCTGCTCACTGGCT
CCTTTCCAGCACCCAGTAAGGGCAACGAACTTCTAGAAGAGCCACCAGTC
CCATCAGGCAGCCCGCTCAAGAGAAGGCTTTCTGTGGAAGAGGAATTTCA
TACTGCTCCCAGCTCTCCGGTCAAAGATCCAGACAGGCCGCATTCTCCTA
TATCCAAAGAAGACGCCTGCGATCTTTCCGTTGGAAGCATCAACAGGACC
AGATACCCAGTCTTACAGCCATCAAACGTCACAGTACCAGTGAACATATT
CAAAAGTCCGAAGAAAACCGACAATGATAAGCCCTCCAACTTTGTGGAAC
GCTTGAGGGGTTCCGACAGTTACCAGCGTTACGATGCATTGCCAATCTCC
AATGATCGAGCAAATTTCAGCTTCAGCACAGTAGCTGATACTTCTTCCAG
CTTCCTTGATTCGACTACTGCTCCCTACGAGACTTCGTTCACGTCGGACA
CCACTGAAGCGGTCGAGTCAATGCTGGAAACCGAATCTATGTACGAGGTG
TCCGTAGTGGAACATCGTCTGAGCGAGCAAGTAACAACACCAAATCTTGC
AGAGATCCAGAACCTAGAACAAATCGCTTGTCAGGAACCTCGCGATTCAA
TTGAGGGGCGGATAATGACAGACCTTCTGCAATTCGGACCGTTCTCGCTC
GATCACCAATACCCGAATACCGTCTCCCTTCGGTATAGATATGAACTAGA
GAGGGTAGCTAGAGAGTGGGATATATCCTTGGATCGCATGTTGGTCGGTT
CTAGCATATCCTTCAAGACACTTGATGATTTCTGGCGCTGGATAGAGGGA
CATAATCAGCGGGGAGGGAAACGGCTCCCCGAAAGGTCCTCTCGCAAGGC
CTGGGATGCTGCTACTGGCAACTTCAGGACTGACAAACATTCAGAAGTTG
TCGTCCTGACAGGGGATATGGAGTGGTCCGCACAAGGGGTCTTGAAGCTA
AGATTGAATCCCTTGAAGACTGAACGGACTTGTCGCTTTCACCGGCGGTT
TGGATCAGACAGGTTTCTCAGTCTGACAGTGCCGGCTCCGGCGCGGCCTC
CACCGCATCTCCGACTGCCCTCTGAGCCTACGCTCCTGCGGGAAACTTTG
GGTCTATGGCTAACGCAGAACGTTCATCGATGCTTAGGGAGGACGTGGAA
GCCCTTTTTCGTGGATCAAGTCACCTCAAAACGCAAGGCAGAAGAACCCA
AATTCCGTATTGATTTCTTCGCAATCGATGGGGTTGATTTTGACCATGGC
TCCCATCCTATCCCTCCTATTGCACCTCCCCATCAAGACAGTAGTAATCA
CACTCCCATGAGCCTAGATGCGCTGGTTGATTGGCACATGCCTCGCGAAG
AGAACCTCATGCAGACCAACTGCAAATTGTTTCAACGCTTCTCATTGGCT
CTCTCGAAAACCTACGCTACAGTGGTCCTACAACCACGACAGGTTCTACC
ATTACCAGATGTATCCAAACCTGTTATGAATGATGGTTGCGCTTTGATGT
CTAGAGGCTTGGCCAATAAGATTTGCGATTCGTTGGGACTGACGGGATAC
ACCCCAAGCGCCTTCCAAGGTAGAATAGCAGGTGCGAAAGGGTTATGGAT
GGTCGACAAGCACCAATCGCACGTGTCAGCGGACGATAATGACGTATGGA
TACAGATATCTGACTCGCAGTTGAAGATCAAGCCGCATCCGTGCCAGTGG
GATGAATCGGTAGACGATGAGAAACTTACCTTTGAGGTTGTGAAATGGTC
TAAACCTTTGCATCCCGTGAATCTAAATATACAGCTTCTGAGTATATTGG
ATCACGGTGGGCATATCAAAGAGCATCTGGCAGATCTCACTAGACTAGGA
ATACAATCGGTGTATCAGGAATTCGCGAACGTTCTTCAATCTGACAGCGC
AGTGCTCTGCCGGAGCCTGGTACAGAAAATCCGGCCGTCAGGTGATGATG
GATTTGGGCCGGTGTCCCAACGCACCTGGCGTTTCGAGAATTGGATGAGC
AGTGACGCCGAATTTATCATCCGACTCACTGAAGCTGGCTTCTGCCCGCG
GAGCTTCTATTTCCTCCGTAAGCGATTAGGGAAGTGCTTGCGAGAGCTTC
TGAAGCGACATGTGGACGAACTTCGCATCGAAGTGCCCCTCTCAACATAC
GCCTTCTGCATTGCCGACCCATACGGGGTTTTGAAGGAGGATGAAGTCCA
TTTTGGCTTTTCCAACAACTGGCGCGACGGGAAGGGGCAATTTGAAGATA
TCCTACTAGATGGCATTGACGTCCTCGTCGGTCGTCTTCCCGCCCACCTG
CCCTCTGATATCCAGCGCCGGAAGGCAGTGTGGAAGTCAGAGCTACGGCA
TTTCAAAGACGTAATTGTCTTTCCCAGTGTTGGCAGCATACCTTTGGCAC
ATATGCTCTCCGGCGGTGACTATGATGGGGATACTCCTTGGATCTGCTGG
GACCAAAACATCGTCCAAAACTTCAACAATTCCAAATTGCCGGATATAGA
GTTCCCAGCGGAGCATTATGGACTTACCAAGTATGCTGTAGGCATGAAAG
ACATCCAATCCATGGATGAATTCCTCCAGAGCTCGTTTACATTCAACTTG
ACCCTGTCGAATCTAGGCCGCTGTACTGTGGAGCATGAAAAGATCGCCTA
CGACGACTCAATCGACTCGGACAAGGCGAAGGAACTCGCTTGCCTCCTAA
GTCACCTAGTAGACGGTCGCAAAGCAGGGGTCCACCTATCAGAGAAAGCA
TGGCAGCAATATCGCAAGAAGATCAGTCCCTGGGCACGCGAACTTCCCGC
ATATAAAAATCCCAGACGGAAGCCCAAGAAATCCAACGTCATTGATTATC
TCCGGTTCGAGGTCGCGACGCAGGAGCGGCACAAGATGCTGGAGAAACTC
GAGGCGGAGTTCCCGGAAGAAAAAGCACCCTTCAGCAAAGATGAAGATTT
GGTGAGGCCATGGCATACGATCCGTGAGAGAATCAAGAATGAAGGCCAGC
GAGGGCAATTATTCATAGCCGCTAAGGGCATGAGAGAAATCATCGGGAAA
CTCCACGATCAATGGATTCGTTCTATATCCCGAAGTCAAGACTCGTTCTC
TCCTCATGCGCTGGACGCCGCGGGAGAGGCCAGATCCATCCCTCCACCAG
AGGGCGATCATCCTTTGATACTGGTCTGGCAGCACTGCCGTGACGAATGG
CTCCGGGTCCTGGCATCTTACACATACAACGAGTATCCCGGCGCCAGCTT
CGTCATGCATGCATTTGGCGAGATCCTCTGCCAGATCAAATCGAGCGCCC
TACCGGCACGATCAGTGACGTCGGAGATTCTCTCTTGCTACCGCGTCAAC
CAGAAGGTGGTCGCTCAGCTGACCGCACAGGATGTGGTTGAGGAAGGAGA
AGAAAGGCTAGACGGGGAAGATGAGTATGAGGGGCACGAAGCGATTGAAG
CGATGCATTTTGGGATGCGATCATCAGGCGGGTACTTTGATCCGGATGAT
TGCTTGTCTGTGGAGTGATTCAACTTGTTTGGAAAGTTTGGATTTGGGTT
CTCGTTGTGGGGACACGTTTCAAGTTGGATACCAGATATATTTTGATGAT
AGGATATGAACTAAGATTTGAGTGACACATGGTGCAGTCAATTCCAGAGA
GGCAAGCACCGATCAGTATTCCTCACATGTCAATGAGTGGCAGCTTCATT
GTCGCTTCCGGCTTGCTCGCATTCCATCCATCCAGCTCTAGGAATGAATG
GTTATTTACTCACATTCCATCCCCTCCTTATCCCTGACTTATCATAGATG
ATTGACTTTTCTTCTACCGAGAAATTGAGCAGAAATTGAGCAGAAATTGA
GCAGAAATTGAGCAGAAATTGAGCAGAAAT back to topCoding sequence (CDS) from alignment at ch4:795033..799612+ >KJC3_004818-T1 ID=KJC3_004818-T1|Name=KJC3_004818-T1|organism=Aspergillus niger KJC3|type=CDS|length=3924bp|location=Sequence derived from alignment at ch4:795033..799612+ (Aspergillus niger KJC3)
ATGACTTTCCCCCGTACCCCAATTAGGAGTGGCCGGGAATTGAACAAGTT
GATCGATTCGATAAACGAGCAATTTGATTTGGACATCCCCAATCCCCTCA
ACTACTCTCCATCTATCGGTGAAAATAACAAGTCACTTGGCTGGAGCCTC
TATGGCCGGATTCGAGTGTTATACTTCAACCGCAAGGTGGACTTGAATCG
GATCTTCAATGACTTCGAGGAGTGGCTTGCCTCCCAGTCGGCGGTGCTGC
CTGCTGGGGATGGTCGCTGGGGACATATACCAGGCTCATTCGCAAACACC
TCGAGAAATATCTTTATCAACAACGTGAGCAGTACTATCTCAAAGGAGGA
GCGCCAACGATATCTGGAAAGATTGTTCAATGACGAGCTCTATCTGCTCA
CTGGCTCCTTTCCAGCACCCAGTAAGGGCAACGAACTTCTAGAAGAGCCA
CCAGTCCCATCAGGCAGCCCGCTCAAGAGAAGGCTTTCTGTGGAAGAGGA
ATTTCATACTGCTCCCAGCTCTCCGGTCAAAGATCCAGACAGGCCGCATT
CTCCTATATCCAAAGAAGACGCCTGCGATCTTTCCGTTGGAAGCATCAAC
AGGACCAGATACCCAGTCTTACAGCCATCAAACGTCACAGTACCAGTGAA
CATATTCAAAAGTCCGAAGAAAACCGACAATGATAAGCCCTCCAACTTTG
TGGAACGCTTGAGGGGTTCCGACAGTTACCAGCGTTACGATGCATTGCCA
ATCTCCAATGATCGAGCAAATTTCAGCTTCAGCACAGTAGCTGATACTTC
TTCCAGCTTCCTTGATTCGACTACTGCTCCCTACGAGACTTCGTTCACGT
CGGACACCACTGAAGCGGTCGAGTCAATGCTGGAAACCGAATCTATGTAC
GAGGTGTCCGTAGTGGAACATCGTCTGAGCGAGCAAGTAACAACACCAAA
TCTTGCAGAGATCCAGAACCTAGAACAAATCGCTTGTCAGGAACCTCGCG
ATTCAATTGAGGGGCGGATAATGACAGACCTTCTGCAATTCGGACCGTTC
TCGCTCGATCACCAATACCCGAATACCGTCTCCCTTCGGTATAGATATGA
ACTAGAGAGGGTAGCTAGAGAGTGGGATATATCCTTGGATCGCATGTTGG
TCGGTTCTAGCATATCCTTCAAGACACTTGATGATTTCTGGCGCTGGATA
GAGGGACATAATCAGCGGGGAGGGAAACGGCTCCCCGAAAGGTCCTCTCG
CAAGGCCTGGGATGCTGCTACTGGCAACTTCAGGACTGACAAACATTCAG
AAGTTGTCGTCCTGACAGGGGATATGGAGTGGTCCGCACAAGGGGTCTTG
AAGCTAAGATTGAATCCCTTGAAGACTGAACGGACTTGTCGCTTTCACCG
GCGGTTTGGATCAGACAGGTTTCTCAGTCTGACAGTGCCGGCTCCGGCGC
GGCCTCCACCGCATCTCCGACTGCCCTCTGAGCCTACGCTCCTGCGGGAA
ACTTTGGGTCTATGGCTAACGCAGAACGTTCATCGATGCTTAGGGAGGAC
GTGGAAGCCCTTTTTCGTGGATCAAGTCACCTCAAAACGCAAGGCAGAAG
AACCCAAATTCCGTATTGATTTCTTCGCAATCGATGGGGTTGATTTTGAC
CATGGCTCCCATCCTATCCCTCCTATTGCACCTCCCCATCAAGACAGTAG
TAATCACACTCCCATGAGCCTAGATGCGCTGGTTGATTGGCACATGCCTC
GCGAAGAGAACCTCATGCAGACCAACTGCAAATTGTTTCAACGCTTCTCA
TTGGCTCTCTCGAAAACCTACGCTACAGTGGTCCTACAACCACGACAGGT
TCTACCATTACCAGATGTATCCAAACCTGTTATGAATGATGGTTGCGCTT
TGATGTCTAGAGGCTTGGCCAATAAGATTTGCGATTCGTTGGGACTGACG
GGATACACCCCAAGCGCCTTCCAAGGTAGAATAGCAGGTGCGAAAGGGTT
ATGGATGGTCGACAAGCACCAATCGCACGTGTCAGCGGACGATAATGACG
TATGGATACAGATATCTGACTCGCAGTTGAAGATCAAGCCGCATCCGTGC
CAGTGGGATGAATCGGTAGACGATGAGAAACTTACCTTTGAGGTTGTGAA
ATGGTCTAAACCTTTGCATCCCGTGAATCTAAATATACAGCTTCTGAGTA
TATTGGATCACGGTGGGCATATCAAAGAGCATCTGGCAGATCTCACTAGA
CTAGGAATACAATCGGTGTATCAGGAATTCGCGAACGTTCTTCAATCTGA
CAGCGCAGTGCTCTGCCGGAGCCTGGTACAGAAAATCCGGCCGTCAGGTG
ATGATGGATTTGGGCCGGTGTCCCAACGCACCTGGCGTTTCGAGAATTGG
ATGAGCAGTGACGCCGAATTTATCATCCGACTCACTGAAGCTGGCTTCTG
CCCGCGGAGCTTCTATTTCCTCCGTAAGCGATTAGGGAAGTGCTTGCGAG
AGCTTCTGAAGCGACATGTGGACGAACTTCGCATCGAAGTGCCCCTCTCA
ACATACGCCTTCTGCATTGCCGACCCATACGGGGTTTTGAAGGAGGATGA
AGTCCATTTTGGCTTTTCCAACAACTGGCGCGACGGGAAGGGGCAATTTG
AAGATATCCTACTAGATGGCATTGACGTCCTCGTCGGTCGTCTTCCCGCC
CACCTGCCCTCTGATATCCAGCGCCGGAAGGCAGTGTGGAAGTCAGAGCT
ACGGCATTTCAAAGACGTAATTGTCTTTCCCAGTGTTGGCAGCATACCTT
TGGCACATATGCTCTCCGGCGGTGACTATGATGGGGATACTCCTTGGATC
TGCTGGGACCAAAACATCGTCCAAAACTTCAACAATTCCAAATTGCCGGA
TATAGAGTTCCCAGCGGAGCATTATGGACTTACCAAGTATGCTGTAGGCA
TGAAAGACATCCAATCCATGGATGAATTCCTCCAGAGCTCGTTTACATTC
AACTTGACCCTGTCGAATCTAGGCCGCTGTACTGTGGAGCATGAAAAGAT
CGCCTACGACGACTCAATCGACTCGGACAAGGCGAAGGAACTCGCTTGCC
TCCTAAGTCACCTAGTAGACGGTCGCAAAGCAGGGGTCCACCTATCAGAG
AAAGCATGGCAGCAATATCGCAAGAAGATCAGTCCCTGGGCACGCGAACT
TCCCGCATATAAAAATCCCAGACGGAAGCCCAAGAAATCCAACGTCATTG
ATTATCTCCGGTTCGAGGTCGCGACGCAGGAGCGGCACAAGATGCTGGAG
AAACTCGAGGCGGAGTTCCCGGAAGAAAAAGCACCCTTCAGCAAAGATGA
AGATTTGGTGAGGCCATGGCATACGATCCGTGAGAGAATCAAGAATGAAG
GCCAGCGAGGGCAATTATTCATAGCCGCTAAGGGCATGAGAGAAATCATC
GGGAAACTCCACGATCAATGGATTCGTTCTATATCCCGAAGTCAAGACTC
GTTCTCTCCTCATGCGCTGGACGCCGCGGGAGAGGCCAGATCCATCCCTC
CACCAGAGGGCGATCATCCTTTGATACTGGTCTGGCAGCACTGCCGTGAC
GAATGGCTCCGGGTCCTGGCATCTTACACATACAACGAGTATCCCGGCGC
CAGCTTCGTCATGCATGCATTTGGCGAGATCCTCTGCCAGATCAAATCGA
GCGCCCTACCGGCACGATCAGTGACGTCGGAGATTCTCTCTTGCTACCGC
GTCAACCAGAAGGTGGTCGCTCAGCTGACCGCACAGGATGTGGTTGAGGA
AGGAGAAGAAAGGCTAGACGGGGAAGATGAGTATGAGGGGCACGAAGCGA
TTGAAGCGATGCATTTTGGGATGCGATCATCAGGCGGGTACTTTGATCCG
GATGATTGCTTGTCTGTGGAGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003968 | RNA-directed 5'-3' RNA polymerase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004818-T1.utr5p1 | KJC3_004818-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004818-T1.utr3p1 | KJC3_004818-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007855 |
| DBxref | PFAM:PF05183 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:795033..799612 + |
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