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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1472078..1473262- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005060-T1 ID=KJC3_005060-T1|Name=KJC3_005060-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1185bp|location=Sequence derived from alignment at ch4:1472078..1473262- (Aspergillus niger KJC3)
TCGCGCTTTGCGCTATACCCCAGGATTTTCTTCTACGACGTGCTTATCAC
TTCGCTGGGGCTTTCGCATTGTTATAGTGTATTCTAGCGGTACAGATCAG
GCACACGTGTGATCACCGGCGCTCCGCATCGCAAGTTCGGAGCTGCTTTC
CCCTCGAACATCCGCATACGAATTAGACCGTCAATAAGTCGCAATGGCAC
CCAAATCGAACAAGAAAGCTGTGGAGGAACGGGAGCCTACTCCTATGAGC
ACATCGTCTGCTGGCGACTCGTCTAGCTCCGAGGTTGAGTCGAACCAGAG
CGGAAGCGAGAGTGACAGCGATAGCAGCACTTCTTCCAACGAAAAGACTT
CTAGCCAGAAGTAGGTCTTCCCAATTGACTCAAGTGAAGGTTATATCAGT
GACTTACGATGTGCTCGCATAGGACCTCCCGTAATGTATCCTTAGCAGCA
CCCCAACCTTACAAAGCTCCGTCTGGATTCAAGTCCTTGAAACAACAAGC
ACCACCGAAGTCCAATGTCTCCTCTCTCCTGTCCGATCTTCGCGGCAAGC
AAGTCTACCACATTACGGCGCCAGACTACCTTCCTCTTTCCAAGGTTGAG
GAAGTCTCGTTGGCCAAGATCATGCAGGGCAAGCCGGTCTTGAAACACAA
GGGTGTGCAATACGGGATTCCGGTGGAAAGCTTTGCGCAACCCGACCTGG
GTGGAAAGACGCTTCACCTGTATGACTCGAAGACCAAGACCTACTACAGT
ACTGCCGCCAGCAACATCCCCAGCTACCACATCCAAGAAATGCTCGACAT
TCCCGAGGTCAGCGATGAGACCGTTGCACAAGCTGTTCAGGAGCAGATCA
AGCCCCCGAGGAAACACCCCAAACACTTGAAGATGCGTTTCCGCCCCGTA
GGAAGTGGCGTGGCACCCCCCGAGACCCTCGGGTCCAGTTCGGAGGAGTC
GGAAGACGAGACGCCTACATTCAAGGTCCCCAAGTCGTTGGAGAAGGAGC
GGGATGAGAGAAAGCGCAAGAACCACCCTACTGAGGCGGACGGGAGCCAG
GCCGACGCCGGTGATGTGCCTCGTAAGAAGTCCAGAAAGTCCGCTCAGGA
GGGAGGTGAAGGCGAGGACAAGAAGAAGAAGTCCAGCAAGAGCCGGGAGG
AGAAGAAGCGCAAGAAGTCCGAGAAGTCTACTTGA back to topCoding sequence (CDS) from alignment at ch4:1472078..1473262- >KJC3_005060-T1 ID=KJC3_005060-T1|Name=KJC3_005060-T1|organism=Aspergillus niger KJC3|type=CDS|length=1860bp|location=Sequence derived from alignment at ch4:1472078..1473262- (Aspergillus niger KJC3)
GACCTCCCGTAATGTATCCTTAGCAGCACCCCAACCTTACAAAGCTCCGT
CTGGATTCAAGTCCTTGAAACAACAAGCACCACCGAAGTCCAATGTCTCC
TCTCTCCTGTCCGATCTTCGCGGCAAGCAAGTCTACCACATTACGGCGCC
AGACTACCTTCCTCTTTCCAAGGTTGAGGAAGTCTCGTTGGCCAAGATCA
TGCAGGGCAAGCCGGTCTTGAAACACAAGGGTGTGCAATACGGGATTCCG
GTGGAAAGCTTTGCGCAACCCGACCTGGGTGGAAAGACGCTTCACCTGTA
TGACTCGAAGACCAAGACCTACTACAGTACTGCCGCCAGCAACATCCCCA
GCTACCACATCCAAGAAATGCTCGACATTCCCGAGGTCAGCGATGAGACC
GTTGCACAAGCTGTTCAGGAGCAGATCAAGCCCCCGAGGAAACACCCCAA
ACACTTGAAGATGCGTTTCCGCCCCGTAGGAAGTGGCGTGGCACCCCCCG
AGACCCTCGGGTCCAGTTCGGAGGAGTCGGAAGACGAGACGCCTACATTC
AAGGTCCCCAAGTCGTTGGAGAAGGAGCGGGATGAGAGAAAGCGCAAGAA
CCACCCTACTGAGGCGGACGGGAGCCAGGCCGACGCCGGTGATGTGCCTC
GTAAGAAGTCCAGAAAGTCCGCTCAGGAGGGAGGTGAAGGCGAGGACAAG
AAGAAGAAGTCCAGCAAGAGCCGGGAGGAGAAGAAGCGCAAGAAGTCCGA
GAAGTCTACTTGAATGGCACCCAAATCGAACAAGAAAGCTGTGGAGGAAC
GGGAGCCTACTCCTATGAGCACATCGTCTGCTGGCGACTCGTCTAGCTCC
GAGGTTGAGTCGAACCAGAGCGGAAGCGAGAGTGACAGCGATAGCAGCAC
TTCTTCCAACGAAAAGACTTCTAGCCAGAAGACCTCCCGTAATGTATCCT
TAGCAGCACCCCAACCTTACAAAGCTCCGTCTGGATTCAAGTCCTTGAAA
CAACAAGCACCACCGAAGTCCAATGTCTCCTCTCTCCTGTCCGATCTTCG
CGGCAAGCAAGTCTACCACATTACGGCGCCAGACTACCTTCCTCTTTCCA
AGGTTGAGGAAGTCTCGTTGGCCAAGATCATGCAGGGCAAGCCGGTCTTG
AAACACAAGGGTGTGCAATACGGGATTCCGGTGGAAAGCTTTGCGCAACC
CGACCTGGGTGGAAAGACGCTTCACCTGTATGACTCGAAGACCAAGACCT
ACTACAGTACTGCCGCCAGCAACATCCCCAGCTACCACATCCAAGAAATG
CTCGACATTCCCGAGGTCAGCGATGAGACCGTTGCACAAGCTGTTCAGGA
GCAGATCAAGCCCCCGAGGAAACACCCCAAACACTTGAAGATGCGTTTCC
GCCCCGTAGGAAGTGGCGTGGCACCCCCCGAGACCCTCGGGTCCAGTTCG
GAGGAGTCGGAAGACGAGACGCCTACATTCAAGGTCCCCAAGTCGTTGGA
GAAGGAGCGGGATGAGAGAAAGCGCAAGAACCACCCTACTGAGGCGGACG
GGAGCCAGGCCGACGCCGGTGATGTGCCTCGTAAGAAGTCCAGAAAGTCC
GCTCAGGAGGGAGGTGAAGGCGAGGACAAGAAGAAGAAGTCCAGCAAGAG
CCGGGAGGAGAAGAAGCGCAAGAAGTCCGAGAAGTCTACTTGAATGGCAC
CCAAATCGAACAAGAAAGCTGTGGAGGAACGGGAGCCTACTCCTATGAGC
ACATCGTCTGCTGGCGACTCGTCTAGCTCCGAGGTTGAGTCGAACCAGAG
CGGAAGCGAGAGTGACAGCGATAGCAGCACTTCTTCCAACGAAAAGACTT
CTAGCCAGAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006360 | transcription by RNA polymerase I |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005060-T1.utr5p1 | KJC3_005060-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013240 |
| DBxref | PFAM:PF08208 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1472078..1473262 - |
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