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KJC3_005197-T1, KJC3_005197-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005197-T1
Unique NameKJC3_005197-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:1877698..1879167+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005197-T1 ID=KJC3_005197-T1|Name=KJC3_005197-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1470bp|location=Sequence derived from alignment at ch4:1877698..1879167+ (Aspergillus niger KJC3)
TCTTCATCTTGTCAACTCAGGGCTGCGGCCCTTCATCAACTCGTCCACCC
CACACCCAGTAGACCAGCGTAAATGAATTGCAGATGATGCGAGGCTCTTC
TAAGGTATGTATATGCAAAACATCTATCTAGTCCACTCCAACCCTCCCCC
GCAGCATGATGAAATCTTTATATATTGGAGCTGTCTTAGCACATTATGCG
GACAAACTTTAATTACTTACGCAACTATTTACTGAATTCTGCACCCCTTT
CACTATACTTCTTTGTCACTGCCATTGAGTCTACGATTTTTTTTTGCCGC
AGATTCTAATTGTCAGTAGTCATTACAGGGCCCTACTAGTGAACAACACA
CCTTCCAGCCTCCTTGATACCCCAACGATCACTTAACCGAATTCATCACA
CCACCTAACCTACGGTACGGTCACACCAAACGCGGTTATAACAAACACCA
TGGCCTACGACCCCCGACTGTCCAGTGCAGGCACTGCGACCGCTCCCTCC
CCTCCACCACCACCCCCACCACCCCCAGAAGCCATGGGATCAACAACTCA
ACCTCAACCCACCACGACGAACGAGGACAAAAACACAGTGCCAGAATCGG
AGTCCTCATCATCCTCATCATATAAACTCCGATTCTGCACCGTGTGCGCC
TCCAATCAGAACCGCTCTATGGAAGCCCACCTCCGTCTCTCCACAGCGAC
GAGTCCCTTCCCTGTAATTTCCTTCGGGACGGGCTCTCTAGTCCGGTTGC
CCGGGCCCTCAATCACCCAACCCAACGTCTACAACTTCAACACAACCTCG
TACTCTCAAATGTACGACGAGCTGCTCTCCAAAGACGAGCGTCTCTACCG
CAACAACGGCCTCCTGAACATGCTCGAGCGCAACCGTAACTTGAAATGGG
GCCCGGAGCGCTTCCAGGACTGGGTACCGGGACAGCCGCGCGTCGAGCAC
GTCTCGAAGGGCGATAAGGGCGCCCTAGGTACTGAAGGCGGCGTTGTCGA
TGTAATCATCACCTGTGAAGAACGGTGCTGGGATGCCGTGGTAGACGATC
TTATGAATAAGGGCTCACCCTTGAACCGGCCCGTGCATGTCTTCAACGTG
GATATCAAGGATAATCACGAAGAGGCATTAGTAGGAGGCAAGGCTATCTT
GGATCTAGCGAATCGGTTAAACGAGGCTGCCTCGCAGGAGAGAAAGACGA
ATGGTGCCGATGGATGGGAGAACGGAGTCGGTGAGGCGAGACGGAATTTC
GATGCTCGCGTGCCTGATATCCTGGCTGAGTGGCAGGAGAGATGGCCTCA
TTTGCCGGCTTTGTGGACACTGGCTTGGCTATAGTCCAGCCTAAGCTTAA
GCATAAAGCACTACGTATGCATTCGGCGTCGGCTTTGAATGATTCTAGAT
CTCTTAGATCTATATCAGATGCAAATAATGTTTCATTCTTAAGTAATGGA
ATACTATCAATTACTTTCAA
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Coding sequence (CDS) from alignment at ch4:1877698..1879167+

>KJC3_005197-T1 ID=KJC3_005197-T1|Name=KJC3_005197-T1|organism=Aspergillus niger KJC3|type=CDS|length=885bp|location=Sequence derived from alignment at ch4:1877698..1879167+ (Aspergillus niger KJC3)
ATGGCCTACGACCCCCGACTGTCCAGTGCAGGCACTGCGACCGCTCCCTC
CCCTCCACCACCACCCCCACCACCCCCAGAAGCCATGGGATCAACAACTC
AACCTCAACCCACCACGACGAACGAGGACAAAAACACAGTGCCAGAATCG
GAGTCCTCATCATCCTCATCATATAAACTCCGATTCTGCACCGTGTGCGC
CTCCAATCAGAACCGCTCTATGGAAGCCCACCTCCGTCTCTCCACAGCGA
CGAGTCCCTTCCCTGTAATTTCCTTCGGGACGGGCTCTCTAGTCCGGTTG
CCCGGGCCCTCAATCACCCAACCCAACGTCTACAACTTCAACACAACCTC
GTACTCTCAAATGTACGACGAGCTGCTCTCCAAAGACGAGCGTCTCTACC
GCAACAACGGCCTCCTGAACATGCTCGAGCGCAACCGTAACTTGAAATGG
GGCCCGGAGCGCTTCCAGGACTGGGTACCGGGACAGCCGCGCGTCGAGCA
CGTCTCGAAGGGCGATAAGGGCGCCCTAGGTACTGAAGGCGGCGTTGTCG
ATGTAATCATCACCTGTGAAGAACGGTGCTGGGATGCCGTGGTAGACGAT
CTTATGAATAAGGGCTCACCCTTGAACCGGCCCGTGCATGTCTTCAACGT
GGATATCAAGGATAATCACGAAGAGGCATTAGTAGGAGGCAAGGCTATCT
TGGATCTAGCGAATCGGTTAAACGAGGCTGCCTCGCAGGAGAGAAAGACG
AATGGTGCCGATGGATGGGAGAACGGAGTCGGTGAGGCGAGACGGAATTT
CGATGCTCGCGTGCCTGATATCCTGGCTGAGTGGCAGGAGAGATGGCCTC
ATTTGCCGGCTTTGTGGACACTGGCTTGGCTATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0004721phosphoprotein phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SSU72KJC3_005197Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005197-T1KJC3_005197-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005197-T1.utr5p1KJC3_005197-T1.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_005197-T1.utr5p2KJC3_005197-T1.utr5p2Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005197-T1.exon1KJC3_005197-T1.exon1Aspergillus niger KJC3exon
KJC3_005197-T1.exon2KJC3_005197-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005197-T1.cdsKJC3_005197-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005197-T1.utr3p1KJC3_005197-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264JW6
DBxrefInterPro:IPR006811
DBxrefPFAM:PF04722
ProductRNA polymerase II subunit A C-terminal domain phosphatase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:1877698..1879167 +
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