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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:2909240..2911181+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005499-T2 ID=KJC3_005499-T2|Name=KJC3_005499-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1942bp|location=Sequence derived from alignment at ch4:2909240..2911181+ (Aspergillus niger KJC3)
CCCGGCACCCACTAAGCTAACTGCTAGGTAGCAGCAAAGGTCATCTGTAT
TATTCTTCTGATGATTTAGGTGTATCGCCTGGAGTATTATAGTAGTTCTA
CGTACGCATATACGAGTCACCGCGATGACATCCTTCAATCAGTCTGGAGA
CACCAAGTTCACCGTGTTTATTCGCCTTCCCTTCCCCAGGGGTGACTTTG
TGGATCCTTCTCCGGTAAGTGCCGCTAGTCAACTGATCTCCATCTCGCTG
ACCAGACAGGTTGAATGGAACGCTGCCAAAGACCAGGCTCTCTGGAATAT
CCTTTCGCGCCCTTCCAAGGGAGATGATTTAGACTGTAATGATGGTGCCT
AATGATAGTCTGATGACATTCAGAAATGCTGACAGTGCCATAGGGAAAGC
ACTGTACGATTGGTCTTATCGAGTATTAAGGCATCACTGATCAACTCTGC
AGGGCAGATCATTTTGATGTAACACTGCAGTTTCTCCTTCAACAGGCAGC
ATGGCTCTACGATCGGCAGCTGTCACAAGTACGTGCACAGATGAGTAGAG
TGCCCACCACTCAGTCGACGTCTACATCTCCTGCTCCTGGTTCGGTGACG
GGTAGCACGGCGCTGGGTCAACAGACAAAAGGTGCCACCAATGCAGGTGG
GTGTTCCCCGATAATGTCCTTTTGAGTTTTCTGACAGCCAAAGGCCCTCG
AGCTCCGTCGCGCCTCTCGACGCAGCAGAAAGATACTCCTCCACAGCGTG
GCAAGTTTTATCCAGCCTCTATGCCTGTATCCTGTAATATTAATGTGGAC
ATTCTAGCTCCCATCCCCCGACGCACCAGCTCAACAACCACCGTTAATCA
AGTCAAAACTGCCCGTGAACCAGTCCACAACGATACCCCTGTGGCGGAGC
CAAGAGAACCTAAGCGAGAAAGCTATGCCAATCGACCAGCTGCAGGTAAA
AGGGAGCAAGCTGCAGCTCCTTCGGCTCCGAAATCCCCTCCTCTGGAAGA
TGATACGACCTCTAGCTCATCTGAGTCCGAGTCCGACGACGACAACGGGT
TTGGAAGTCGTCGTGGCCTGCGATTCAAGCCCCCTTTCGGCAAATTCTCC
ACGCATAGGGCCAGCCTGAGGTACGACGATGAAGATGACGATGAGTCCCC
TGCTTTCCTGCCGGAACCAGAAAGGACGTCCCACGGAGCGTCTGGGCAGG
ATCTTAATGCTACGTTGAGGATGAACGCCGAGGATGTTTCTGAGTCACAC
CGACGCCCCTCAGCACAGACGATTTCTAGAACATCAGTCACAACCGAATC
ATCCGCAAGCTCTGCCAGTTCCGGAGTCCCAGTTGCACATCCACAATCTG
ACAGACGGCGACGGTTGAATCAAAGCGGAGGGCCATTGAGTCCTAGAAGA
ACTGGGGAACTGGCACATTTCAGTCCGCGACAGTCTATGGCTTTGCGGAG
AGACGCGAGCGACGGGACTCCTAGTATGGGGAGCAGCTTTAGTGACCTAG
ATGGTGAGCTTCTCTTCTGGGCGCATGATATCATACTGACTCCTCGTCTA
GATGCGAGCGTCACGCAGTCCGCACTTGAGGAAGCACTCTTGAGCAACAT
CCAGCACGGTGGGATGGCCAGTCGCATGAGCACAATCAGCCAGGCGATCC
GTAGTCGATATCTAGGACGGGCGGAGGATAGGTTCTCGTGAAGTTGCAAT
GATACGAGGTACGATTGAGTCAGTTTGTCGATGAATAGCGGGATAATTCA
TTTGGTCAATATCGAATATTGCGATTTTACTATTCAAAGTATCACTATAG
TGTTTCAGATTCAATATCGGCACTACTTGACTGCCTGATGAGCAATGGCG
GCTTGCCATGATGTGAGTCTCAGCTCGGGGAATATATTCTGTCGGCCTGG
GGATACTAGTATACTAATATAATCGACCTAAACTACCAGTGC back to topCoding sequence (CDS) from alignment at ch4:2909240..2911181+ >KJC3_005499-T2 ID=KJC3_005499-T2|Name=KJC3_005499-T2|organism=Aspergillus niger KJC3|type=CDS|length=1746bp|location=Sequence derived from alignment at ch4:2909240..2911181+ (Aspergillus niger KJC3)
ATGCCTGTATCCTGTAATATTAATGTGGACATTCTAGCTCCCATCCCCCG
ACGCACCAGCTCAACAACCACCGTTAATCAAGTCAAAACTGCCCGTGAAC
CAGTCCACAACGATACCCCTGTGGCGGAGCCAAGAGAACCTAAGCGAGAA
AGCTATGCCAATCGACCAGCTGCAGGTAAAAGGGAGCAAGCTGCAGCTCC
TTCGGCTCCGAAATCCCCTCCTCTGGAAGATGATACGACCTCTAGCTCAT
CTGAGTCCGAGTCCGACGACGACAACGGGTTTGGAAGTCGTCGTGGCCTG
CGATTCAAGCCCCCTTTCGGCAAATTCTCCACGCATAGGGCCAGCCTGAG
GTACGACGATGAAGATGACGATGAGTCCCCTGCTTTCCTGCCGGAACCAG
AAAGGACGTCCCACGGAGCGTCTGGGCAGGATCTTAATGCTACGTTGAGG
ATGAACGCCGAGGATGTTTCTGAGTCACACCGACGCCCCTCAGCACAGAC
GATTTCTAGAACATCAGTCACAACCGAATCATCCGCAAGCTCTGCCAGTT
CCGGAGTCCCAGTTGCACATCCACAATCTGACAGACGGCGACGGTTGAAT
CAAAGCGGAGGGCCATTGAGTCCTAGAAGAACTGGGGAACTGGCACATTT
CAGTCCGCGACAGTCTATGGCTTTGCGGAGAGACGCGAGCGACGGGACTC
CTAGTATGGGGAGCAGCTTTAGTGACCTAGATGATGCGAGCGTCACGCAG
TCCGCACTTGAGGAAGCACTCTTGAGCAACATCCAGCACGGTGGGATGGC
CAGTCGCATGAGCACAATCAGCCAGGCGATCCGTAGTCGATATCTAGGAC
GGGCGGAGGATAGGTTCTCGTGAATGCCTGTATCCTGTAATATTAATGTG
GACATTCTAGCTCCCATCCCCCGACGCACCAGCTCAACAACCACCGTTAA
TCAAGTCAAAACTGCCCGTGAACCAGTCCACAACGATACCCCTGTGGCGG
AGCCAAGAGAACCTAAGCGAGAAAGCTATGCCAATCGACCAGCTGCAGGT
AAAAGGGAGCAAGCTGCAGCTCCTTCGGCTCCGAAATCCCCTCCTCTGGA
AGATGATACGACCTCTAGCTCATCTGAGTCCGAGTCCGACGACGACAACG
GGTTTGGAAGTCGTCGTGGCCTGCGATTCAAGCCCCCTTTCGGCAAATTC
TCCACGCATAGGGCCAGCCTGAGGTACGACGATGAAGATGACGATGAGTC
CCCTGCTTTCCTGCCGGAACCAGAAAGGACGTCCCACGGAGCGTCTGGGC
AGGATCTTAATGCTACGTTGAGGATGAACGCCGAGGATGTTTCTGAGTCA
CACCGACGCCCCTCAGCACAGACGATTTCTAGAACATCAGTCACAACCGA
ATCATCCGCAAGCTCTGCCAGTTCCGGAGTCCCAGTTGCACATCCACAAT
CTGACAGACGGCGACGGTTGAATCAAAGCGGAGGGCCATTGAGTCCTAGA
AGAACTGGGGAACTGGCACATTTCAGTCCGCGACAGTCTATGGCTTTGCG
GAGAGACGCGAGCGACGGGACTCCTAGTATGGGGAGCAGCTTTAGTGACC
TAGATGATGCGAGCGTCACGCAGTCCGCACTTGAGGAAGCACTCTTGAGC
AACATCCAGCACGGTGGGATGGCCAGTCGCATGAGCACAATCAGCCAGGC
GATCCGTAGTCGATATCTAGGACGGGCGGAGGATAGGTTCTCGTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005499-T2.utr5p1 | KJC3_005499-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005499-T2.utr3p1 | KJC3_005499-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR039362 |
| DBxref | InterPro:IPR040666 |
| DBxref | PFAM:PF18388 |
| Product | variant 2 |
| Product | Autophagy protein 29 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:2909240..2911181 + |
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